genome.fa.s24.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  85  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13664059--13664114	12	4.5	12	76	14	51	82	5	1	10	0.91
13664059--13664115	11	5.3	10	77	12	51	82	5	1	10	0.90
13664060--13664108	23	2.1	23	85	7	64	81	6	0	12	0.86
13665170--13666275	108	10.2	109	79	5	803	21	21	13	44	1.86
13665415--13665588	37	4.8	35	72	9	127	20	20	12	46	1.83
13665774--13666061	110	2.6	108	81	4	326	18	21	15	44	1.87
13666230--13666343	35	3.2	35	64	14	97	21	25	13	39	1.90
13666202--13666468	72	3.7	72	86	2	342	21	24	11	42	1.86
13666331--13666444	37	3.1	37	70	9	99	21	21	12	44	1.84
13666488--13666572	36	2.3	35	86	7	116	18	21	10	49	1.77
13668095--13668138	3	14.3	3	81	13	54	63	2	0	34	1.07
13672428--13672507	20	4.0	20	64	15	56	40	5	5	50	1.46
13672788--13672872	42	2.0	42	90	2	136	34	5	7	52	1.53
13674863--13674905	12	3.6	12	80	0	50	67	6	6	18	1.37
13682101--13682422	165	2.0	164	92	2	538	44	11	8	36	1.70
13684710--13684772	30	2.1	30	82	2	74	61	6	6	25	1.44
13684803--13684951	74	2.0	74	100	0	298	47	9	12	30	1.72
13686290--13686315	2	13.0	2	100	0	52	50	0	0	50	1.00
13686487--13686780	149	1.9	152	82	6	364	42	7	4	46	1.50
13687228--13687279	23	2.2	24	83	12	65	57	5	1	34	1.33
13689807--13689876	11	6.5	11	72	8	54	52	1	8	37	1.41
13689822--13689878	22	2.6	22	91	0	87	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13689822--13689889	22	3.0	24	77	16	65	57	0	7	35	1.27
13689903--13689949	22	2.1	23	84	4	60	59	4	4	31	1.36
13689982--13690082	22	4.7	23	69	15	65	53	2	8	34	1.47
13690392--13690437	22	2.1	22	83	0	56	43	2	15	39	1.59
13690452--13690979	22	24.0	22	69	9	164	48	8	7	35	1.62
13690459--13690637	66	2.7	66	80	10	181	49	7	7	36	1.58
13690943--13691015	22	3.3	22	80	3	74	43	6	10	38	1.67
13690967--13691014	23	2.1	23	88	0	69	50	2	8	39	1.44
13691021--13691167	22	6.7	22	79	6	109	46	9	4	40	1.55
13691016--13691177	44	3.7	43	79	6	146	45	8	5	40	1.58
13691051--13691168	22	5.4	22	83	0	128	46	7	4	41	1.52
13691051--13691208	22	7.2	22	78	8	117	46	6	6	40	1.56
13691037--13691208	66	2.6	66	83	3	186	47	7	6	38	1.58
13691016--13691234	66	3.3	64	79	8	158	45	7	7	39	1.61
13691440--13691538	22	4.5	22	74	12	80	44	5	10	40	1.60
13691471--13691524	23	2.4	23	81	3	65	46	7	9	37	1.64
13691447--13691565	22	5.5	22	73	11	75	45	5	10	39	1.60
13691751--13691858	22	4.9	22	73	13	96	48	11	7	33	1.67
13691751--13691858	44	2.5	44	76	3	110	48	11	7	33	1.67
13692080--13692139	22	2.6	23	76	12	70	48	6	1	43	1.39
13692522--13692559	15	2.5	15	88	12	60	18	0	0	81	0.69
13692523--13692559	19	1.9	19	89	10	58	18	0	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13692546--13692643	27	3.6	28	81	9	107	29	5	2	63	1.27
13693022--13693062	20	2.0	21	85	4	57	21	17	14	46	1.84
13693402--13693470	3	23.0	3	83	14	81	28	1	2	66	1.14
13693524--13693822	57	5.2	58	81	10	323	45	5	11	37	1.63
13693548--13693822	113	2.4	114	84	6	335	45	5	12	37	1.64
13705452--13705852	43	9.2	43	79	10	400	23	15	17	43	1.87
13705453--13705852	88	4.6	89	83	9	445	23	15	17	43	1.87
13705453--13705860	220	1.9	219	85	3	579	23	15	17	43	1.87
13705875--13705916	16	2.6	16	85	10	59	85	7	4	2	0.80
13705876--13705916	17	2.5	16	84	7	55	87	4	4	2	0.72
13706078--13706176	27	3.7	27	82	5	114	31	4	2	62	1.25
13706999--13707035	5	7.4	5	100	0	74	18	0	0	81	0.70
13707042--13707365	58	5.6	58	83	8	369	45	5	9	39	1.61
13707042--13707343	116	2.6	116	87	5	436	45	5	9	39	1.61
13708837--13708861	13	1.9	13	100	0	50	60	8	8	24	1.52
13711128--13711181	26	2.1	26	82	6	65	62	0	3	33	1.12
13711911--13711956	23	2.0	23	91	4	76	45	0	6	47	1.28
13711980--13712049	29	2.4	28	77	13	70	52	1	4	41	1.30
13712001--13712057	28	2.0	29	86	3	80	52	0	5	42	1.24
13712179--13712207	2	14.5	2	100	0	58	0	48	0	51	1.00
13715059--13715101	19	2.2	20	84	12	54	30	6	2	60	1.35
13715076--13715109	18	1.9	17	88	5	50	32	5	2	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13715106--13715150	20	2.2	21	77	18	51	24	4	4	66	1.29
13719152--13719177	11	2.4	11	100	0	52	76	7	0	15	0.99
13719153--13719199	20	2.3	20	81	0	58	65	6	2	25	1.27
13721507--13721556	3	16.7	3	100	0	100	32	0	0	68	0.90
13723896--13723923	2	14.0	2	100	0	56	50	0	0	50	1.00
13725475--13725504	9	3.2	9	95	4	51	63	0	0	36	0.95
13725477--13725506	10	3.1	10	95	4	53	63	0	0	36	0.95
13725474--13725520	19	2.5	20	79	10	62	61	0	0	38	0.96
13725551--13725631	36	2.3	35	76	14	87	49	3	0	46	1.19
13725555--13725621	17	3.8	18	71	19	52	52	4	0	43	1.21
13725554--13725651	11	9.1	11	67	16	53	50	4	0	45	1.20
13727590--13727724	4	33.8	4	66	16	50	29	3	2	64	1.23
13727647--13727687	14	2.9	15	78	14	50	31	7	0	60	1.24
13728479--13728583	4	26.5	4	79	12	55	26	0	1	71	0.96
13728473--13728585	22	5.2	21	72	19	74	24	0	1	72	1.00
13728479--13728591	27	4.4	26	72	16	85	25	0	1	72	0.94
13728474--13728551	30	2.6	29	80	9	77	26	1	2	69	1.09
13728540--13728588	5	9.8	5	85	14	66	18	0	0	81	0.69
13728536--13728591	22	2.7	21	88	5	87	19	0	0	80	0.71
13728544--13728606	26	2.4	26	83	2	72	23	1	1	73	1.01
13728597--13728906	59	5.3	57	73	14	206	44	6	9	39	1.63
13728630--13728898	63	4.6	59	79	10	259	42	6	11	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13732033--13732063	15	2.1	15	93	0	53	19	19	9	51	1.74
13735753--13736395	319	2.0	325	94	3	1140	36	13	14	34	1.86
13739591--13739636	13	3.5	13	77	16	51	84	0	8	6	0.77
13739591--13739643	12	4.3	12	84	13	65	83	0	9	7	0.83
13739592--13739641	25	2.0	26	92	4	84	82	0	10	8	0.86
13740626--13741025	42	9.4	41	77	8	311	24	15	20	39	1.91
13740604--13741025	86	5.0	84	81	6	383	24	14	20	39	1.91
13741227--13741277	23	2.2	22	86	13	68	25	1	1	70	1.08
13741214--13741258	4	11.5	4	81	13	58	22	2	2	73	1.05
13741264--13741325	22	2.7	23	87	5	81	37	6	0	56	1.25
13741291--13741361	13	5.6	13	73	23	55	33	8	0	57	1.29
13741287--13741361	39	1.9	39	89	10	118	33	8	0	58	1.27
13742080--13742122	3	15.0	3	90	9	72	32	0	0	67	0.91
13742079--13742122	23	2.0	22	95	4	79	31	0	0	68	0.90
13742091--13742130	17	2.4	17	86	0	53	37	0	0	62	0.95
13742194--13742532	55	6.0	59	76	11	223	43	7	12	36	1.70
13742204--13742293	29	3.1	30	64	22	73	40	2	13	44	1.56
13742272--13742569	55	5.4	54	79	2	310	43	9	12	34	1.76
13742273--13742569	109	2.7	109	86	1	387	43	9	12	34	1.76
13744121--13744392	58	4.7	58	84	5	345	38	12	5	43	1.66
13744121--13744385	116	2.3	115	90	3	417	39	13	5	41	1.68
13744403--13744561	8	18.4	8	70	16	52	71	3	1	23	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13744421--13744455	11	3.2	11	87	0	52	85	5	0	8	0.73
13744476--13744561	4	22.2	4	80	19	87	72	1	0	26	0.92
13744469--13744562	30	3.2	27	76	22	91	69	2	0	28	1.00
13745211--13745277	29	2.3	29	94	0	116	19	29	14	35	1.92
13745381--13745627	40	6.1	42	75	14	130	67	0	3	28	1.11
13745426--13745611	7	27.3	7	74	15	72	66	0	2	30	1.10
13745431--13745631	32	6.5	32	73	19	151	68	0	2	28	1.06
13745417--13745633	14	14.7	14	76	16	99	68	0	2	28	1.05
13745541--13745634	7	14.0	7	84	11	110	74	0	0	25	0.82
13751673--13752187	59	8.7	59	82	4	626	35	13	6	44	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129