genome.fa.s24.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  51  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7200988--7201186	105	1.9	103	81	4	238	30	10	15	43	1.80
7201098--7201227	49	2.7	49	82	7	131	28	13	13	45	1.80
7202554--7202584	11	2.7	11	95	5	53	90	0	9	0	0.46
7202547--7202584	13	3.0	12	92	7	58	86	0	10	2	0.66
7203389--7203445	28	2.0	29	86	6	82	36	7	10	45	1.66
7205946--7206020	7	11.7	7	72	18	65	45	40	0	14	1.45
7205946--7206020	32	2.4	31	82	12	91	45	40	0	14	1.45
7205940--7206041	13	8.1	13	72	9	86	45	38	0	15	1.53
7208063--7208134	37	1.9	37	85	0	99	33	16	6	43	1.75
7210537--7210561	11	2.3	11	100	0	50	92	0	8	0	0.40
7210846--7210902	17	3.3	17	72	18	55	38	14	7	40	1.73
7213041--7213081	20	2.0	20	86	9	57	48	19	9	21	1.77
7213197--7213275	10	7.8	10	71	13	54	79	1	15	3	0.93
7213197--7213275	11	6.7	11	68	18	52	79	1	15	3	0.93
7213734--7213820	31	2.7	33	83	3	97	70	0	24	5	1.09
7213727--7213831	6	17.2	6	68	14	63	72	0	22	4	1.03
7213768--7213832	28	2.4	27	78	12	73	73	0	21	4	1.00
7213727--7213838	40	2.8	40	80	10	104	71	0	22	6	1.08
7217369--7217401	16	2.0	17	94	5	59	66	0	9	24	1.20
7219164--7219238	18	4.2	18	81	6	80	4	0	17	78	0.90
7219190--7219237	19	2.6	19	87	6	73	0	0	18	81	0.70
7219163--7219215	14	3.8	14	80	14	56	5	0	18	75	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7219152--7219237	18	4.9	17	79	12	77	4	0	15	80	0.87
7219267--7219373	36	3.0	35	79	4	124	53	15	13	17	1.73
7219277--7219516	71	3.4	70	76	8	207	52	13	15	18	1.75
7219437--7219542	35	2.9	37	81	8	128	51	10	16	20	1.74
7220766--7220801	13	2.8	12	88	12	54	19	0	2	77	0.88
7227519--7227557	16	2.5	15	80	8	51	53	12	0	33	1.39
7227660--7227710	25	2.0	25	85	14	68	74	11	5	7	1.21
7227767--7227804	18	2.1	18	85	9	51	68	5	7	18	1.34
7227952--7228029	37	2.1	38	83	7	97	39	19	7	33	1.80
7230734--7230785	24	2.2	24	82	0	59	21	1	11	65	1.34
7231588--7231661	13	5.8	12	75	16	53	74	0	17	8	1.05
7231588--7231662	19	3.8	19	70	16	55	74	0	17	8	1.04
7231588--7231653	25	2.6	25	81	6	80	74	0	18	7	1.05
7231598--7231659	31	2.0	30	84	12	81	72	0	17	9	1.10
7232114--7232218	19	5.4	19	71	20	67	75	2	18	3	1.08
7232123--7232214	9	9.4	9	72	15	51	76	3	16	4	1.08
7232123--7232184	9	6.7	9	75	12	54	77	3	14	4	1.06
7232118--7232174	19	2.8	20	86	5	80	75	1	17	5	1.07
7232115--7232214	22	4.7	22	73	11	59	76	3	17	4	1.07
7232115--7232206	5	17.4	5	71	18	53	76	2	17	4	1.06
7233808--7233865	17	3.4	17	74	9	55	24	10	15	50	1.75
7234139--7234244	41	2.5	42	83	6	117	28	18	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7234172--7234253	42	2.0	41	88	7	121	25	21	15	36	1.94
7234309--7234566	41	6.3	41	72	6	171	30	18	11	39	1.86
7234413--7234566	84	1.9	83	84	2	211	29	18	11	40	1.85
7234593--7235357	42	18.5	41	74	7	440	29	17	11	41	1.85
7234446--7234746	146	2.1	147	81	6	362	31	17	10	40	1.84
7234588--7235330	83	9.0	84	73	8	350	30	17	11	41	1.84
7234593--7235251	166	4.0	165	77	5	456	30	17	11	41	1.84
7235159--7235352	80	2.4	83	78	8	211	30	14	11	43	1.81
7235388--7235462	26	3.0	24	81	11	80	78	12	4	5	1.05
7235681--7235803	31	4.0	31	74	2	113	18	21	13	46	1.83
7235810--7235877	31	2.2	30	80	10	75	22	20	14	42	1.88
7236311--7236531	111	2.0	109	90	5	347	43	11	13	30	1.80
7241160--7241361	101	2.0	101	95	0	359	32	19	16	31	1.95
7242945--7242981	17	2.2	17	90	0	56	83	0	16	0	0.64
7242944--7242981	13	2.9	13	81	14	51	81	0	18	0	0.69
7243927--7243982	14	3.6	14	74	21	58	39	42	0	17	1.50
7243938--7244075	19	7.3	19	68	16	90	37	43	1	17	1.58
7243930--7244001	33	2.2	33	100	0	144	40	44	0	15	1.46
7247168--7247288	37	3.2	38	82	3	136	25	10	21	42	1.85
7251474--7251507	3	11.3	3	100	0	68	32	0	0	67	0.91
7263321--7263388	35	1.9	35	94	5	120	29	11	8	50	1.69
7263800--7263919	64	1.9	65	84	6	165	39	11	10	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7264292--7264610	65	5.0	63	77	10	297	37	11	12	37	1.80
7264255--7264590	127	2.6	124	78	12	333	38	11	12	36	1.81
7264292--7264602	127	2.4	126	81	6	374	38	11	12	37	1.80
7264663--7264958	63	4.6	63	78	9	287	37	13	12	36	1.82
7264315--7264913	300	2.0	301	90	0	948	39	12	12	36	1.80
7265427--7265579	63	2.4	63	81	5	177	37	13	12	36	1.83
7265064--7265822	274	2.7	281	82	7	833	38	12	13	35	1.83
7265547--7266052	230	2.2	232	83	4	639	37	13	14	34	1.85
7265963--7266117	63	2.5	63	83	7	181	32	19	13	34	1.91
7283167--7283231	18	3.6	18	76	12	69	29	4	3	63	1.30
7294356--7294410	28	2.0	28	82	7	67	65	3	5	25	1.31
7294448--7294478	16	1.9	16	100	0	62	61	0	6	32	1.21
7294522--7294565	20	2.2	20	80	4	54	61	6	4	27	1.41
7294878--7294919	17	2.5	17	81	11	52	33	0	7	59	1.25
7294973--7295033	9	6.7	9	73	14	54	27	3	1	67	1.16
7295048--7295082	10	3.4	10	88	4	52	34	0	8	57	1.29
7298073--7298139	9	7.3	9	76	21	68	46	29	2	20	1.66
7298079--7298128	19	2.6	19	100	0	100	46	30	4	20	1.69
7300606--7300662	28	2.1	27	83	3	69	56	7	5	31	1.49
7300761--7300801	3	13.7	3	100	0	82	31	34	0	34	1.58
7300980--7301069	26	3.5	26	78	4	92	20	28	21	30	1.98
7301107--7301159	3	17.7	3	100	0	106	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7301612--7301648	19	1.9	19	88	0	56	29	5	21	43	1.75
7301988--7302066	5	15.6	5	72	15	56	20	6	1	72	1.14
7301988--7302066	13	5.2	15	70	15	56	20	6	1	72	1.14
7309087--7309137	18	2.9	17	82	8	57	70	3	3	21	1.20
7310906--7310948	19	2.3	18	76	11	50	25	16	20	37	1.93
7310916--7310954	19	2.1	19	95	0	69	23	15	23	38	1.92
7311109--7311144	16	2.2	16	90	0	54	30	0	0	69	0.89
7311231--7311265	16	2.2	16	89	0	52	20	2	0	77	0.90
7312968--7313008	21	1.9	21	85	5	55	4	19	14	60	1.51
7318990--7319023	3	11.0	3	93	6	59	35	0	0	64	0.94
7321158--7321207	5	10.6	5	81	14	54	82	2	2	14	0.86
7321158--7321206	13	4.2	12	80	12	50	81	2	2	14	0.87
7321158--7321207	23	2.1	23	88	3	73	82	2	2	14	0.86
7322026--7322063	20	1.9	20	88	0	58	76	0	0	23	0.79
7322365--7322867	116	4.3	119	77	7	429	43	16	20	18	1.87
7323393--7323433	13	3.1	13	96	3	73	31	9	21	36	1.86
7327819--7327967	74	2.0	74	97	0	280	28	23	11	36	1.90
7330405--7330435	15	2.1	15	93	0	53	83	0	16	0	0.64
7330407--7330454	17	2.9	16	84	9	60	81	0	16	2	0.79
7330408--7330453	24	1.9	24	86	8	67	82	0	15	2	0.76
7331692--7331725	14	2.4	14	95	0	59	79	0	14	5	0.91
7331690--7331734	13	3.5	13	85	8	56	77	0	17	4	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7331692--7331767	14	5.6	14	77	14	54	76	0	13	10	1.02
7332690--7332746	22	2.6	21	81	10	60	26	17	24	31	1.97
7333064--7333144	29	2.8	29	80	0	99	25	19	17	37	1.94
7333172--7333242	33	2.2	33	87	2	99	39	18	12	29	1.88
7333467--7333512	15	3.1	15	77	22	53	82	6	10	0	0.83
7335100--7335135	3	11.7	3	94	5	63	69	0	0	30	0.89
7335090--7335135	22	2.1	22	88	8	67	69	2	2	26	1.11
7335228--7335275	15	2.8	18	78	15	57	66	0	2	31	1.03
7335489--7335552	31	2.0	33	85	11	89	45	18	9	26	1.80
7335548--7335589	13	3.2	13	86	0	57	61	11	2	23	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129