genome.fa.s24.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  94  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15576203--15576254	27	1.9	27	84	0	68	9	7	0	82	0.84
15576221--15576268	16	2.9	16	87	3	69	8	6	0	85	0.74
15576219--15576268	17	3.1	16	86	13	75	8	6	0	86	0.72
15580222--15580251	15	2.1	14	93	6	51	13	3	0	83	0.77
15581209--15581255	21	2.3	21	85	10	62	2	29	2	65	1.15
15581758--15581822	34	2.0	32	87	6	94	76	4	3	15	1.07
15581771--15581820	23	2.2	23	82	7	57	78	6	2	14	1.03
15581803--15581896	4	24.2	4	75	16	74	71	3	3	22	1.15
15581765--15581904	34	4.1	34	80	9	117	72	3	3	20	1.14
15581779--15581907	35	3.8	35	74	24	102	72	3	3	20	1.15
15585943--15586004	31	2.0	31	100	0	124	25	22	6	45	1.76
15602713--15602780	20	3.2	20	82	13	75	85	2	7	4	0.82
15602711--15602772	1	62.0	1	77	0	52	87	3	6	3	0.75
15606433--15606630	98	2.0	98	98	0	378	30	15	16	37	1.90
15607406--15607442	18	2.1	18	89	0	56	48	21	5	24	1.71
15608657--15608698	19	2.2	19	91	0	66	33	23	14	28	1.94
15608060--15609684	333	4.8	332	85	5	2030	38	12	14	35	1.84
15608057--15609678	683	2.4	675	86	3	2136	37	12	14	34	1.84
15617158--15617186	12	2.5	12	94	5	51	58	0	0	41	0.98
15618634--15618679	3	15.3	3	100	0	92	65	0	0	34	0.93
15620114--15620144	2	15.5	2	100	0	62	48	0	0	51	1.00
15620255--15620304	21	2.5	20	79	17	59	62	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15620501--15620539	2	19.5	2	100	0	78	51	0	48	0	1.00
15625364--15626275	161	5.7	158	74	9	588	44	14	8	32	1.76
15625364--15625970	321	1.9	322	80	2	727	45	14	8	32	1.74
15627412--15627446	13	2.7	13	86	0	52	54	8	11	25	1.64
15629660--15629700	21	2.0	21	85	0	55	39	21	9	29	1.86
15643253--15643504	80	3.2	77	81	7	290	24	7	24	44	1.79
15643486--15643533	12	3.9	12	81	5	60	14	2	35	47	1.56
15643488--15643535	25	1.9	25	91	0	78	14	2	35	47	1.56
15648362--15648576	58	3.7	58	86	4	317	38	13	6	41	1.71
15648595--15648626	5	6.8	5	86	13	50	87	0	0	12	0.54
15648595--15648628	9	3.7	9	96	4	59	88	0	0	11	0.52
15649446--15649476	16	1.9	16	93	0	53	87	0	9	3	0.66
15649463--15649572	42	2.7	41	80	9	118	69	3	3	23	1.21
15649537--15649684	4	37.5	4	68	17	53	64	2	4	29	1.23
15649491--15649600	11	10.2	11	74	18	61	64	3	3	28	1.27
15649538--15649691	10	14.5	10	69	20	73	63	2	3	29	1.25
15649712--15649769	20	3.0	20	87	7	75	77	3	0	18	0.91
15649713--15649764	14	3.8	13	82	12	59	76	1	0	21	0.87
15649665--15649764	7	14.1	7	76	8	51	75	3	3	19	1.07
15649705--15649775	20	3.5	20	75	9	63	78	4	1	15	0.97
15649950--15650293	125	2.7	125	81	6	374	38	20	15	25	1.91
15649955--15650297	42	8.1	41	80	8	318	37	21	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15651293--15651331	11	3.4	11	86	13	60	10	15	0	74	1.07
15651286--15651329	13	3.2	13	80	6	52	9	13	0	77	0.99
15651286--15651331	24	1.9	24	95	0	83	10	15	0	73	1.08
15661695--15662087	58	6.8	58	84	8	503	35	13	7	43	1.72
15662104--15662128	13	1.9	13	100	0	50	80	0	0	20	0.72
15663050--15663162	20	5.6	20	73	12	104	65	2	3	28	1.23
15663050--15663208	43	3.8	40	78	10	115	63	3	3	29	1.27
15663107--15663206	22	4.6	22	81	1	112	62	2	4	32	1.25
15663050--15663192	14	10.4	14	66	25	74	64	2	2	30	1.22
15663107--15663217	44	2.6	44	87	4	147	61	2	3	32	1.27
15663107--15663254	44	3.4	44	78	8	115	63	2	2	31	1.22
15663196--15663265	28	2.4	30	77	15	85	65	2	2	28	1.21
15663299--15663333	6	6.0	6	93	6	63	68	0	0	31	0.90
15664019--15664213	61	3.2	61	71	14	150	32	15	13	38	1.86
15664019--15664241	122	1.8	121	80	7	263	32	14	13	39	1.84
15664202--15664283	42	2.0	42	87	0	119	36	7	17	39	1.77
15664140--15664416	105	2.6	105	79	2	263	32	13	12	41	1.81
15664232--15664451	105	2.1	104	82	0	260	35	11	12	40	1.79
15666969--15667021	21	2.4	24	78	18	69	7	16	1	73	1.15
15668468--15668512	22	2.1	21	84	12	56	64	0	22	13	1.28
15686145--15686194	16	3.2	16	76	21	61	44	10	6	40	1.63
15691059--15691088	16	1.9	15	93	6	51	10	20	23	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15697131--15697174	6	7.5	6	92	5	72	0	0	45	54	0.99
15703151--15703501	134	2.6	134	82	4	415	29	12	19	38	1.89
15708611--15708658	20	2.3	20	96	3	87	37	22	12	27	1.90
15713487--15713737	80	3.2	80	83	0	288	22	8	25	43	1.82
15717130--15717732	302	2.0	300	86	3	843	38	14	13	34	1.84
15727738--15727781	23	1.9	23	86	9	63	79	9	6	4	1.04
15728023--15728061	21	1.9	20	85	15	53	58	0	2	38	1.12
15728741--15728796	29	1.9	29	82	7	69	53	1	1	42	1.21
15734609--15734637	2	14.5	2	100	0	58	0	0	48	51	1.00
15737886--15737920	3	11.7	3	100	0	70	31	0	0	68	0.90
15738433--15738498	34	2.0	33	87	3	96	46	0	1	51	1.10
15738477--15738505	14	2.0	15	93	6	51	62	0	0	37	0.96
15745023--15745126	52	2.0	52	84	3	138	25	19	8	46	1.78
15745153--15745192	11	3.6	11	86	0	53	50	20	0	30	1.49
15745147--15745192	22	2.1	22	87	0	65	47	21	0	30	1.51
15746440--15746554	48	2.4	48	85	4	151	51	5	18	25	1.67
15746539--15746662	38	3.2	38	76	15	112	55	5	11	27	1.57
15746554--15746657	38	2.7	39	83	10	133	52	6	13	26	1.65
15746578--15746770	37	5.3	36	76	8	158	53	7	13	24	1.65
15746578--15746770	71	2.6	72	76	8	194	53	7	13	24	1.65
15746578--15746770	36	5.3	36	77	7	140	53	7	13	24	1.65
15753790--15753840	24	2.2	23	82	10	59	27	0	7	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15754351--15754410	31	1.9	31	86	0	84	48	18	5	28	1.69
15754405--15754443	20	2.0	20	90	10	62	46	15	7	30	1.74
15754524--15754576	20	2.6	19	82	11	61	50	28	3	16	1.62
15754530--15754576	20	2.3	20	88	3	67	51	29	4	14	1.62
15754770--15754907	52	2.7	50	80	9	154	36	15	10	38	1.81
15755112--15755248	65	2.1	65	80	2	150	45	5	21	28	1.73
15755414--15755770	86	4.2	86	76	7	327	35	13	19	31	1.90
15755831--15755865	17	2.1	17	88	0	52	54	11	20	14	1.70
15759940--15760034	47	2.0	47	93	0	163	63	4	13	18	1.46
15760829--15760876	24	2.0	25	95	4	89	29	4	8	58	1.46
15760938--15761050	7	15.6	7	71	27	60	76	3	3	15	1.05
15760924--15761045	24	5.2	24	73	18	82	77	4	2	15	1.05
15760991--15761043	19	2.8	19	97	2	99	81	3	0	15	0.83
15761436--15761509	20	3.7	19	77	16	69	50	28	4	17	1.64
15766812--15766854	16	2.7	16	85	0	50	34	13	13	37	1.85
15767735--15767775	19	2.3	18	88	12	59	39	0	0	60	0.96
15767845--15767886	12	3.2	13	86	10	59	59	2	0	38	1.10
15767853--15767889	6	6.0	6	90	3	56	54	0	0	45	1.00
15779676--15780094	181	2.3	180	81	3	459	41	7	10	39	1.69
15780392--15782523	180	11.8	181	71	11	606	41	9	8	40	1.68
15780451--15780935	179	2.7	176	78	7	469	40	9	9	40	1.70
15781160--15781194	17	2.0	17	88	5	52	42	2	2	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15781229--15781605	203	1.9	202	82	2	479	41	9	8	40	1.69
15781650--15781682	15	2.2	15	94	0	57	66	0	3	30	1.06
15781404--15782662	180	7.0	178	77	8	986	41	9	8	40	1.67
15781488--15782628	354	3.2	355	79	8	1061	41	9	8	41	1.67
15782750--15782829	6	13.0	6	78	12	58	21	1	2	75	1.00
15782749--15782834	18	4.8	18	73	10	70	22	1	2	74	1.00
15782799--15782836	5	7.4	5	88	11	51	23	0	0	76	0.79
15782963--15783009	21	2.2	21	85	11	60	23	4	6	65	1.33
15783819--15783877	30	2.0	30	90	6	93	15	6	1	76	1.07
15783798--15783901	40	2.7	40	74	14	101	17	8	1	72	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129