genome.fa.s24.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  23  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3134261--3138624	905	4.9	900	87	2	5870	26	24	23	25	2.00
3139510--3139560	26	2.0	26	100	0	102	25	27	19	27	1.99
3138748--3144627	903	6.6	880	83	8	6381	25	24	24	25	2.00
3140413--3140463	26	2.0	26	100	0	102	25	27	19	27	1.99
3141316--3141368	26	2.0	26	92	0	88	28	24	18	28	1.98
3141992--3142022	12	2.6	12	94	0	53	3	74	19	3	1.10
3142154--3144626	892	2.8	869	83	7	3034	25	24	24	25	2.00
3145440--3145492	26	2.0	26	92	0	88	28	24	18	28	1.98
3146346--3146397	26	2.0	26	92	0	86	26	23	19	30	1.98
3144654--3148386	913	4.2	900	84	5	4639	25	25	24	25	2.00
3147581--3149198	812	2.0	811	86	1	2269	25	24	25	25	2.00
3149499--3149551	26	2.0	26	92	0	88	24	28	20	26	1.99
3151026--3151078	26	2.0	26	96	0	97	28	26	16	28	1.97
3151212--3151263	26	2.0	26	96	0	95	32	23	17	26	1.96
3152051--3152103	26	2.0	26	96	0	97	28	26	18	26	1.98
3152943--3152995	26	2.0	26	92	0	88	30	24	18	26	1.98
3153831--3153883	26	2.0	26	92	0	88	28	28	18	24	1.98
3154731--3154781	26	2.0	26	92	0	84	29	23	17	29	1.97
3151355--3157515	882	7.0	883	86	3	7978	26	24	23	25	2.00
3155611--3155663	26	2.0	26	85	0	70	28	20	20	30	1.98
3157388--3157438	26	2.0	26	100	0	102	27	25	19	27	1.99
3157312--3157724	215	1.9	215	88	0	619	17	29	27	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3158503--3158553	26	2.0	26	100	0	102	27	25	19	27	1.99
3159386--3159438	26	2.0	26	92	0	88	26	24	20	28	1.99
3157527--3161299	891	4.2	891	86	2	5210	25	25	23	25	2.00
3161156--3161206	26	2.0	26	100	0	102	27	25	19	27	1.99
3161109--3161471	193	1.9	193	92	0	618	19	26	29	25	1.98
3161349--3161399	26	2.0	26	96	0	93	29	25	17	27	1.98
3162242--3162294	26	2.0	26	96	0	97	26	24	20	28	1.99
3162268--3165154	715	4.0	717	87	2	4112	26	24	23	26	2.00
3165285--3165336	26	2.0	26	92	0	86	28	26	19	25	1.98
3166171--3166223	26	2.0	26	92	0	88	30	24	18	26	1.98
3164415--3169598	885	5.8	900	84	5	6480	25	25	24	24	2.00
3167076--3167128	26	2.0	26	96	0	97	26	28	20	24	1.99
3168828--3168880	26	2.0	26	100	0	106	26	26	20	26	1.99
3169572--3169650	26	3.0	26	92	0	131	27	21	20	30	1.98
3168828--3170363	757	2.0	766	87	4	2242	25	25	23	26	2.00
3171355--3171407	26	2.0	26	92	0	88	28	24	18	28	1.98
3172070--3172451	162	2.4	160	84	2	480	19	30	28	20	1.97
3172422--3172475	26	2.1	26	92	0	90	27	22	18	31	1.97
3172917--3172968	26	2.0	26	96	0	95	30	25	15	28	1.96
3172338--3173287	492	1.9	486	86	3	1303	21	26	27	25	1.99
3175616--3175665	26	1.9	26	88	8	75	26	26	18	30	1.98
3172830--3180883	903	9.0	899	86	3	10288	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3176522--3176573	26	2.0	26	92	0	86	28	25	19	26	1.98
3178296--3178348	26	2.0	26	100	0	106	26	26	20	26	1.99
3179180--3179230	26	2.0	26	88	0	75	25	25	21	27	1.99
3181653--3181705	26	2.0	26	88	0	79	26	24	20	28	1.99
3182532--3182584	26	2.0	26	88	0	79	30	24	18	26	1.98
3181092--3184983	893	4.4	883	87	4	5297	26	24	23	25	2.00
3183422--3183477	26	2.2	26	96	0	103	28	26	17	26	1.98
3186686--3186735	26	1.9	26	95	0	91	24	28	20	28	1.99
3185810--3198206	899	13.9	897	84	5	14797	25	24	24	25	2.00
3188484--3188536	26	2.0	26	88	0	79	26	24	20	28	1.99
3189376--3189428	26	2.0	26	100	0	106	26	26	20	26	1.99
3192065--3192117	26	2.0	26	92	0	88	28	24	18	28	1.98
3192944--3198183	917	5.8	906	84	7	6122	25	24	23	25	2.00
3195872--3195902	12	2.6	12	100	0	62	12	29	19	38	1.89
3197564--3197602	17	2.3	17	90	0	60	12	25	43	17	1.85
3199804--3199854	26	2.0	26	92	7	86	29	25	15	29	1.96
3200694--3200746	26	2.0	26	100	0	106	26	26	20	26	1.99
3201578--3201627	26	1.9	26	100	0	100	24	28	20	28	1.99
3199117--3202781	895	4.1	897	87	3	5179	25	25	23	25	2.00
3202474--3202526	26	2.0	26	85	0	70	32	22	18	26	1.97
3202840--3202892	26	2.0	26	96	0	97	28	26	18	26	1.98
3203734--3203786	26	2.0	26	81	0	61	24	22	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3204630--3204682	26	2.0	26	100	0	106	30	26	16	26	1.97
3202784--3212584	898	10.9	897	86	4	12718	25	25	24	25	2.00
3205534--3205586	26	2.0	26	88	0	79	32	24	16	26	1.97
3206430--3206482	26	2.0	26	96	0	97	30	24	16	28	1.97
3207333--3207385	26	2.0	26	96	0	97	26	26	18	28	1.98
3208234--3208286	26	2.0	26	96	0	97	26	24	20	28	1.99
3209968--3210020	26	2.0	26	92	0	88	26	24	20	28	1.99
3210866--3210943	26	3.0	26	96	1	140	28	26	17	26	1.98
3215127--3215179	26	2.0	26	96	0	97	26	24	20	28	1.99
3216029--3216081	26	2.0	26	92	0	88	26	22	22	28	1.99
3218683--3218735	26	2.0	26	96	0	97	28	26	18	26	1.98
3216922--3223094	897	6.9	898	85	3	7926	25	24	24	25	2.00
3222454--3223732	640	2.0	641	89	1	1936	28	24	21	25	1.99
3223798--3223850	26	2.0	26	96	0	97	26	24	20	28	1.99
3225925--3226273	173	2.0	174	88	2	515	21	31	26	20	1.98
3226206--3226258	26	2.0	26	96	0	97	26	24	20	28	1.99
3227097--3227149	26	2.0	26	92	0	88	28	24	18	28	1.98
3226232--3229683	884	3.9	875	84	5	4556	25	25	24	24	2.00
3229234--3230133	460	2.0	459	88	2	1351	30	23	21	24	1.99
3232673--3232725	26	2.0	26	92	0	88	24	24	20	30	1.99
3231800--3236120	891	4.9	897	86	4	5913	25	24	24	25	2.00
3234440--3234492	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3235342--3235393	26	2.0	26	88	0	77	30	25	15	28	1.96
3235367--3236711	709	1.9	698	88	3	2054	27	22	23	26	1.99
3237382--3237434	26	2.0	26	92	0	88	26	22	20	30	1.98
3239157--3239209	26	2.0	26	96	0	97	26	26	18	28	1.98
3240037--3240089	26	2.0	26	96	0	97	28	26	18	26	1.98
3237002--3244486	903	8.4	892	85	4	9566	25	24	23	25	2.00
3243581--3243633	26	2.0	26	96	0	97	26	24	20	28	1.99
3255250--3255302	26	2.0	26	92	0	88	26	24	18	30	1.98
3256148--3256197	26	1.9	26	100	0	100	24	26	20	30	1.98
3256994--3257046	26	2.0	26	96	0	97	28	26	18	26	1.98
3257897--3257949	26	2.0	26	96	0	97	26	24	20	28	1.99
3259672--3259722	26	2.0	26	88	0	75	31	21	17	29	1.96
3260570--3260621	26	2.0	26	88	7	79	30	23	17	28	1.97
3261470--3261520	26	2.0	26	96	0	93	25	25	19	29	1.99
3256898--3266171	898	10.4	898	86	3	12017	25	24	24	25	2.00
3262359--3262411	26	2.0	26	88	0	79	28	26	18	26	1.98
3263242--3263294	26	2.0	26	96	0	97	28	26	18	26	1.98
3265037--3265089	26	2.0	26	85	0	70	28	22	20	28	1.99
3265931--3265983	26	2.0	26	92	0	88	26	26	20	26	1.99
3266604--3266656	26	2.0	26	96	0	97	26	26	22	24	2.00
3267511--3267563	26	2.0	26	92	0	88	24	24	22	28	2.00
3268355--3268407	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3270624--3270675	25	2.0	26	92	3	88	28	21	19	30	1.97
3271527--3271579	26	2.0	26	96	0	97	28	26	18	26	1.98
3273312--3273364	26	2.0	26	92	0	88	28	24	18	28	1.98
3270615--3275850	893	5.9	899	86	4	6948	25	24	24	25	2.00
3274180--3274232	26	2.0	26	96	0	97	28	26	18	26	1.98
3275063--3275115	26	2.0	26	92	0	88	30	26	16	26	1.97
3275091--3277289	719	3.1	717	90	1	3350	26	24	22	25	2.00
3278268--3278320	26	2.0	26	88	0	79	26	24	18	30	1.98
3277396--3281692	863	4.8	893	85	4	5615	25	24	23	25	2.00
3283392--3283442	26	2.0	26	92	0	84	27	21	19	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129