genome.fa.s24.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  66  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10157891--10158367	144	3.4	145	81	9	499	46	5	6	41	1.53
10159550--10159594	21	2.1	21	87	0	63	31	20	13	35	1.91
10160906--10161178	144	1.9	144	79	4	309	32	12	13	41	1.82
10162298--10162413	7	17.5	6	71	16	70	43	31	0	24	1.60
10162279--10162378	13	7.5	13	74	13	62	45	29	1	25	1.60
10162312--10162429	7	18.0	7	70	9	54	42	33	0	22	1.60
10162298--10162413	19	5.8	19	73	12	74	43	31	0	24	1.60
10162314--10162402	32	2.7	32	81	6	90	46	31	0	22	1.52
10162393--10162428	13	2.8	13	87	12	56	38	38	2	19	1.66
10165385--10165435	25	2.1	25	86	13	72	54	5	9	29	1.56
10165858--10165885	9	3.1	9	100	0	56	53	10	14	21	1.70
10167809--10167874	13	5.6	12	72	18	50	68	0	3	28	1.05
10167879--10168037	53	3.0	53	80	7	171	48	6	8	36	1.60
10173561--10175351	625	3.0	583	91	7	2859	28	21	18	31	1.97
10176537--10176583	16	2.9	16	77	0	58	44	29	12	12	1.80
10183133--10183159	12	2.2	12	100	0	54	22	7	18	51	1.70
10184021--10184098	31	2.5	31	91	0	129	35	7	16	39	1.78
10190699--10190723	2	12.5	2	100	0	50	52	0	0	48	1.00
10193582--10193632	21	2.7	19	73	26	54	45	5	0	49	1.26
10194286--10194364	38	2.1	38	81	11	92	46	0	2	50	1.14
10200311--10200367	18	2.9	18	82	10	60	26	0	5	68	1.11
10200326--10200367	18	2.2	20	88	12	63	26	0	2	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10204967--10205051	42	2.0	42	90	0	134	25	15	32	25	1.95
10205938--10205964	14	1.9	14	100	0	54	44	0	7	48	1.31
10208951--10209003	27	2.0	27	96	3	99	39	7	22	30	1.82
10214008--10214047	21	1.9	21	85	10	55	65	5	5	25	1.34
10221288--10221327	4	9.8	4	91	2	62	20	2	0	77	0.88
10222407--10222455	24	2.0	24	81	14	57	30	0	6	63	1.19
10236961--10237008	22	2.2	21	82	10	53	60	4	2	33	1.27
10240695--10240729	16	2.1	17	89	5	54	31	8	8	51	1.63
10240692--10240732	17	2.4	18	84	12	59	34	7	7	51	1.58
10242245--10242289	2	22.5	2	100	0	90	51	0	48	0	1.00
10245195--10245244	24	2.0	26	92	7	86	62	4	10	24	1.44
10251070--10251121	25	2.1	25	85	7	70	34	1	1	61	1.18
10251528--10251622	42	2.3	40	77	12	97	53	2	0	44	1.12
10251598--10251645	19	2.5	19	79	3	60	52	0	0	47	1.00
10251716--10251743	2	14.0	2	100	0	56	50	0	0	50	1.00
10252532--10252575	12	3.5	12	82	11	52	6	0	4	88	0.62
10252532--10252575	14	3.2	13	90	6	61	6	0	4	88	0.62
10252544--10252577	7	5.0	7	96	3	61	11	0	0	88	0.52
10252535--10252577	21	2.0	21	86	8	61	9	0	4	86	0.71
10255504--10255565	29	2.1	30	82	5	74	51	4	1	41	1.33
10258337--10258496	10	16.0	10	71	15	91	57	5	3	33	1.38
10258335--10258520	10	18.8	9	69	17	86	58	5	2	33	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10258334--10258520	30	6.3	29	72	15	111	57	5	2	33	1.37
10258410--10258445	9	3.8	9	89	10	54	63	8	0	27	1.23
10258408--10258520	29	3.8	30	74	16	94	59	7	1	30	1.36
10258536--10258584	19	2.5	19	80	9	55	51	2	6	40	1.38
10258926--10258974	21	2.3	21	85	0	71	26	0	6	67	1.14
10258936--10258982	21	2.2	21	84	0	58	31	0	8	59	1.27
10258983--10259041	25	2.3	26	85	11	77	47	5	0	47	1.24
10259034--10259073	20	2.0	21	90	5	64	37	2	7	52	1.43
10259041--10259132	29	3.1	29	80	7	71	40	1	4	54	1.27
10259085--10259184	29	3.3	29	87	5	137	47	0	4	49	1.20
10259223--10259266	10	4.7	9	81	18	54	40	0	4	54	1.21
10259174--10259266	9	9.0	10	75	22	52	38	1	7	52	1.37
10264461--10264532	30	2.4	30	81	9	94	33	6	29	30	1.84
10269265--10269339	10	7.2	9	75	21	51	77	6	4	12	1.10
10269268--10269339	33	2.2	33	82	9	85	77	6	4	11	1.09
10270729--10270758	16	1.9	15	93	6	51	93	6	0	0	0.35
10272137--10272201	20	3.2	20	78	18	71	30	7	7	53	1.57
10272089--10272218	47	2.9	45	73	20	121	30	7	10	52	1.63
10272206--10272269	32	2.0	32	87	0	92	29	1	12	56	1.46
10272180--10272310	32	4.0	32	75	13	90	28	3	9	58	1.45
10272294--10272355	24	2.6	24	82	7	81	30	3	12	53	1.55
10272282--10272351	19	3.3	20	70	22	54	30	4	12	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10272448--10272511	20	3.2	20	72	16	60	29	3	14	53	1.56
10272459--10272516	20	2.9	20	75	10	64	34	3	12	50	1.57
10273633--10273672	20	2.0	21	90	5	64	25	7	7	60	1.50
10283603--10283746	78	1.8	78	83	2	191	36	9	20	34	1.85
10285758--10285849	24	3.9	24	74	7	89	17	3	4	75	1.11
10286124--10286183	20	3.0	20	81	11	77	31	6	8	53	1.57
10286193--10286256	32	2.0	32	90	0	101	31	1	12	54	1.47
10286276--10286338	24	2.6	24	82	7	74	33	6	9	50	1.60
10286262--10286336	24	3.4	22	74	20	68	32	5	10	52	1.59
10286432--10286544	20	5.9	20	74	12	103	34	5	11	48	1.62
10288942--10288989	23	2.0	24	84	4	62	50	18	6	25	1.70
10290652--10290691	21	1.9	21	85	10	55	75	0	12	12	1.06
10291093--10291155	33	1.9	32	83	3	81	82	4	9	3	0.92
10292471--10292769	55	5.4	55	79	8	313	50	7	8	34	1.59
10292725--10292812	43	2.1	43	91	2	142	53	9	4	32	1.53
10301064--10301125	21	2.9	22	76	9	65	38	4	9	46	1.58
10303433--10303667	118	2.0	118	85	1	321	51	8	2	37	1.46
10307076--10307163	45	1.9	47	88	4	135	17	22	1	59	1.44
10307921--10308028	39	2.7	39	78	8	110	26	7	20	45	1.77
10307938--10308028	39	2.3	40	84	1	121	26	6	19	47	1.74
10307971--10308051	40	2.0	40	81	9	94	25	13	18	41	1.87
10309346--10309736	54	7.1	54	77	12	304	51	6	7	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10309361--10309827	110	4.3	107	76	10	365	50	6	7	35	1.57
10309346--10309824	56	8.7	55	77	9	331	50	6	7	35	1.58
10309544--10309825	109	2.6	111	81	8	276	47	7	6	37	1.59
10310363--10310388	13	2.0	13	100	0	52	69	0	0	30	0.89
10315266--10315320	27	2.1	27	86	3	76	47	20	12	20	1.82
10320436--10320469	9	3.8	9	88	0	50	0	44	0	55	0.99
10323109--10323213	52	2.0	52	90	3	167	47	9	18	24	1.78
10325026--10325097	29	2.4	29	90	2	108	51	1	5	41	1.34
10327490--10327522	8	4.1	8	85	14	50	84	0	3	12	0.72
10327557--10327854	164	1.8	165	85	3	422	41	7	10	39	1.68
10327722--10327773	25	2.0	26	82	10	63	46	5	9	38	1.61
10327884--10328019	56	2.4	57	82	6	170	49	12	11	26	1.75
10331417--10331461	5	8.8	5	85	2	54	82	2	4	11	0.91
10331811--10331858	21	2.3	20	83	13	62	81	0	14	4	0.84
10331810--10331861	19	2.8	18	78	16	61	80	0	15	3	0.85
10331814--10331858	20	2.2	20	88	7	65	82	0	13	4	0.82
10333065--10333267	25	8.4	24	66	21	77	41	8	12	37	1.73
10333055--10333336	46	6.1	47	76	15	246	40	8	12	38	1.75
10333092--10333208	56	2.1	56	88	0	171	40	7	12	39	1.72
10333055--10333246	102	1.9	102	87	2	287	40	8	12	39	1.73
10333188--10333538	21	16.0	21	65	18	101	41	9	13	35	1.78
10333269--10333361	25	3.9	25	76	8	86	39	11	12	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10333213--10333446	110	2.1	110	90	3	382	42	9	13	34	1.78
10333408--10333492	25	3.6	25	70	12	79	45	10	10	32	1.73
10333394--10333538	46	3.2	46	85	4	199	40	10	13	35	1.78
10333964--10334004	19	2.2	19	100	0	82	41	9	19	29	1.83
10334098--10334245	40	3.6	40	82	8	145	23	10	16	49	1.76
10334098--10334277	43	4.3	42	83	9	154	22	10	17	49	1.77
10334099--10334277	83	2.1	82	82	6	207	22	10	17	49	1.76
10335078--10335122	9	5.3	9	82	12	51	82	4	0	13	0.82
10335078--10335124	16	2.8	17	80	6	60	80	4	0	14	0.85
10335492--10335737	55	4.5	53	75	10	201	50	11	13	25	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129