genome.fa.s24.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  39  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5234154--5234206	26	2.0	26	96	0	97	28	26	18	26	1.98
5236824--5236873	25	2.0	26	92	4	84	28	28	18	26	1.98
5237008--5237057	25	2.0	26	96	4	93	32	26	14	28	1.94
5237896--5237974	26	3.0	25	94	3	131	29	26	17	26	1.98
5238806--5238884	26	3.0	26	85	3	106	26	24	22	26	2.00
5240631--5240682	27	2.0	27	85	11	72	32	23	15	28	1.95
5241514--5241566	26	2.0	26	96	0	97	28	26	18	26	1.98
5236849--5243929	901	7.9	883	82	7	7509	26	24	23	25	2.00
5243902--5243951	26	1.9	26	100	0	100	40	30	12	18	1.86
5244617--5244669	26	2.0	26	96	0	97	26	24	20	28	1.99
5245510--5245562	26	2.0	26	89	7	81	26	26	18	28	1.98
5246352--5253332	888	7.8	902	85	4	8715	26	24	23	25	2.00
5251653--5251705	26	2.0	26	96	0	97	28	26	18	26	1.98
5252539--5252591	26	2.0	26	92	0	88	28	24	18	28	1.98
5254134--5254186	26	2.0	26	100	0	106	26	22	20	30	1.98
5253517--5255780	873	2.6	871	85	5	2928	26	23	23	26	2.00
5254986--5258580	698	5.1	698	90	2	5509	26	23	23	26	2.00
5261807--5261857	26	2.0	26	96	0	93	27	31	17	23	1.97
5260162--5263370	903	3.6	894	87	3	4426	26	24	22	25	2.00
5263781--5263830	25	2.0	26	92	4	84	30	24	18	28	1.97
5264669--5264718	25	2.0	25	92	0	82	32	26	18	24	1.97
5263681--5266017	903	2.6	892	85	4	3153	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5266768--5266820	26	2.0	26	92	0	88	28	24	18	28	1.98
5267249--5268140	467	1.9	462	90	2	1430	33	22	16	27	1.95
5268387--5268436	25	2.0	25	84	7	66	30	22	16	32	1.95
5269265--5269334	30	2.3	31	80	7	81	42	0	1	55	1.08
5270611--5270661	26	2.0	26	92	0	84	27	25	17	29	1.98
5271137--5273333	894	2.5	894	83	8	2851	25	25	23	25	2.00
5271558--5273265	879	2.0	863	87	4	2475	25	25	23	25	2.00
5275703--5275754	26	2.0	26	100	0	104	26	19	26	26	1.99
5278367--5278417	26	2.0	26	92	0	84	25	17	29	27	1.98
5280130--5280182	26	2.0	26	96	0	97	26	18	26	28	1.98
5281022--5281073	26	2.0	25	88	3	77	28	15	26	28	1.96
5274345--5283906	888	10.8	888	83	6	10829	25	23	24	25	2.00
5279383--5283797	883	5.0	884	84	4	5439	25	23	24	26	2.00
5283880--5283932	26	2.0	26	88	0	79	26	20	26	26	1.99
5283676--5284091	185	2.3	185	86	0	555	22	28	27	22	1.99
5284777--5284828	26	2.0	26	96	0	95	28	19	25	26	1.98
5285657--5285709	26	2.0	26	88	0	79	26	20	26	26	1.99
5283859--5292242	876	9.4	883	85	5	9886	24	24	25	25	2.00
5287427--5287479	26	2.0	26	96	0	97	28	20	24	26	1.99
5288337--5288389	26	2.0	26	96	0	97	28	20	26	24	1.99
5290994--5291046	26	2.0	26	96	0	97	28	20	24	26	1.99
5294071--5294123	26	2.0	26	92	7	90	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5294962--5295014	26	2.0	26	96	0	97	26	18	26	28	1.98
5295796--5295845	26	1.9	26	100	0	100	18	12	30	40	1.86
5294251--5296462	731	3.1	711	85	5	2866	25	23	23	27	2.00
5294251--5296462	732	3.1	707	85	5	2939	25	23	23	27	2.00
5297298--5297348	26	2.0	26	84	0	66	25	17	27	29	1.98
5298197--5298249	26	2.0	26	100	0	106	26	20	26	26	1.99
5295694--5304746	900	10.2	898	86	3	11727	24	23	25	26	2.00
5299097--5299147	26	2.0	26	92	0	84	29	15	23	31	1.95
5300869--5300919	26	2.0	26	96	0	93	25	15	29	29	1.96
5302655--5302707	26	2.0	26	100	0	106	26	20	26	26	1.99
5304549--5304919	193	1.9	196	85	4	509	23	25	29	21	1.99
5305494--5305552	26	2.3	26	93	0	100	27	23	25	23	2.00
5305494--5305565	26	2.8	26	86	0	90	27	22	23	26	1.99
5307283--5307335	26	2.0	26	96	0	97	28	16	24	30	1.97
5307309--5307675	159	2.3	159	81	0	430	24	27	26	21	1.99
5308336--5308386	26	2.0	26	88	0	75	29	13	27	29	1.94
5307468--5309813	893	2.6	886	86	2	3266	25	23	24	26	2.00
5313240--5313292	26	2.0	26	96	0	97	26	24	20	28	1.99
5314145--5314197	26	2.0	26	88	0	79	28	22	18	30	1.98
5311465--5315375	903	4.3	901	85	4	4853	25	25	23	24	2.00
5315031--5315080	26	1.9	26	95	0	91	24	26	20	30	1.98
5317140--5317192	26	2.0	26	85	7	72	28	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5318929--5318981	26	2.0	26	100	0	106	26	26	20	26	1.99
5320740--5320792	26	2.0	26	92	0	88	26	26	20	26	1.99
5321191--5321215	11	2.3	11	100	0	50	52	0	8	40	1.31
5316432--5323814	904	8.2	901	85	3	9163	26	24	23	25	2.00
5322538--5322588	26	2.0	26	96	0	93	27	21	21	29	1.99
5326906--5326958	26	2.0	26	100	0	106	26	22	20	30	1.98
5327764--5331038	868	3.7	867	81	9	3881	26	24	23	25	2.00
5329379--5329431	26	2.0	26	85	0	70	30	28	16	24	1.97
5330277--5331762	718	2.1	712	86	5	2061	27	23	23	26	2.00
5331868--5331920	26	2.0	26	92	7	90	30	26	16	26	1.97
5330993--5340934	880	11.1	889	78	10	9352	25	24	24	25	2.00
5332765--5332817	26	2.0	26	96	0	97	26	20	24	28	1.99
5333656--5333706	26	2.0	26	88	0	75	35	19	11	33	1.88
5335236--5335610	159	2.4	159	86	2	495	19	31	28	21	1.97
5337313--5337365	26	2.0	26	92	0	88	28	24	20	26	1.99
5338196--5338248	26	2.0	26	100	0	106	26	26	20	26	1.99
5339076--5339128	26	2.0	26	96	0	97	28	26	18	26	1.98
5336608--5340889	873	4.8	875	84	6	5186	26	24	24	25	2.00
5340853--5340905	26	2.0	26	92	0	88	28	28	18	24	1.98
5340691--5341098	185	2.2	185	85	0	539	22	27	26	22	1.99
5341040--5341090	26	2.0	26	100	0	102	31	25	15	27	1.96
5341941--5341993	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5340877--5342887	892	2.2	895	86	3	2812	25	25	24	24	2.00
5342833--5342885	26	2.0	26	92	0	88	28	28	18	24	1.98
5342671--5343073	185	2.2	185	86	0	547	22	27	26	23	2.00
5343020--5343070	26	2.0	26	100	0	102	31	25	15	27	1.96
5343926--5343997	26	2.8	26	95	0	126	27	27	18	26	1.98
5343022--5354055	902	12.0	917	74	12	6326	25	24	23	25	2.00
5344837--5344915	26	3.0	26	88	0	122	25	24	24	26	2.00
5345955--5346006	26	2.0	26	88	3	79	26	21	23	28	1.99
5347723--5347775	26	2.0	26	100	0	106	26	26	20	26	1.99
5349533--5349585	26	2.0	26	100	0	106	26	26	20	26	1.99
5352221--5352273	26	2.0	26	96	0	97	28	26	18	26	1.98
5345657--5371065	902	28.2	904	76	8	18209	26	24	23	25	2.00
5354622--5354671	26	1.9	26	95	0	91	40	28	12	20	1.87
5355453--5355505	26	2.0	26	92	0	88	26	22	20	30	1.98
5356346--5356398	26	2.0	26	89	7	81	26	26	18	28	1.98
5357895--5357947	26	2.0	26	96	0	97	26	24	20	28	1.99
5357921--5371084	865	14.9	864	82	7	14334	25	24	24	25	2.00
5367670--5367722	26	2.0	26	92	0	88	28	24	18	28	1.98
5369439--5369491	26	2.0	26	100	0	106	26	22	20	30	1.98
5368563--5371085	874	2.8	884	85	4	3178	25	24	24	25	2.00
5371037--5373416	870	2.8	850	84	4	3118	27	23	22	26	2.00
5374817--5375474	348	1.9	348	84	3	894	20	27	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5377110--5377162	26	2.0	26	96	0	97	26	24	20	28	1.99
5376228--5380888	908	5.2	900	83	6	5546	25	24	24	25	2.00
5378903--5378953	26	2.0	26	96	0	93	27	23	19	29	1.98
5382399--5382428	4	7.5	4	92	0	51	3	70	26	0	1.03
5382609--5382661	26	2.0	26	92	0	88	26	26	20	26	1.99
5383866--5388679	871	5.5	869	83	6	5571	25	24	24	25	2.00
5387404--5387456	26	2.0	26	88	0	79	30	24	18	26	1.98
5386532--5388679	902	2.4	893	83	4	2593	26	24	23	25	2.00
5392270--5392322	26	2.0	26	92	0	88	28	26	20	24	1.99
5388926--5399229	902	11.7	876	85	5	12663	25	25	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129