genome.fa.s24.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  117  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19636895--19637148	45	6.0	39	67	17	107	53	3	0	42	1.21
19636931--19637204	23	12.0	23	66	15	124	53	2	0	43	1.18
19636893--19637198	13	25.6	12	66	25	93	53	2	0	43	1.18
19637289--19637329	16	2.7	15	85	7	55	51	0	0	48	1.00
19637947--19637985	16	2.4	16	87	8	53	48	0	10	41	1.37
19638001--19638043	20	2.2	20	95	0	77	32	0	13	53	1.41
19638751--19638787	19	1.9	19	88	0	56	51	0	2	45	1.15
19641036--19641068	2	16.5	2	100	0	66	48	0	0	51	1.00
19649652--19649692	21	2.0	21	85	0	55	34	21	29	14	1.93
19659370--19659405	18	2.0	18	100	0	72	27	11	16	44	1.82
19659510--19659563	23	2.3	23	96	0	99	25	22	14	37	1.93
19662847--19662872	2	13.0	2	100	0	52	50	0	0	50	1.00
19666507--19666533	2	13.5	2	100	0	54	48	0	0	51	1.00
19668337--19668389	12	4.2	12	75	20	54	32	0	0	67	0.91
19677358--19677425	28	2.4	29	80	11	79	54	2	0	42	1.15
19677371--19677432	29	2.4	24	76	13	61	58	3	0	38	1.15
19677861--19678616	363	2.1	367	85	5	1033	46	8	9	36	1.66
19678990--19679029	20	2.0	20	85	9	55	55	0	0	45	0.99
19680157--19680181	13	1.9	13	100	0	50	64	0	0	36	0.94
19680502--19680535	6	5.3	6	86	13	50	52	0	0	47	1.00
19680838--19680886	19	2.6	19	78	12	57	40	0	0	59	0.98
19680834--19680903	23	3.2	23	75	24	80	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19686453--19686610	79	2.0	79	98	0	307	29	12	26	32	1.92
19697281--19697343	23	2.7	23	95	2	108	63	0	1	34	1.04
19698681--19698730	2	26.0	2	76	8	50	42	0	0	58	0.98
19698694--19698745	25	2.1	25	82	7	61	36	0	3	59	1.16
19706911--19706950	20	2.0	21	85	5	55	40	0	10	50	1.36
19713894--19713958	27	2.3	29	81	10	80	43	0	0	56	0.99
19714413--19714479	21	3.2	21	75	10	66	43	0	0	56	0.99
19714634--19714689	22	2.5	23	80	5	62	53	1	0	44	1.11
19733169--19733199	15	2.1	15	93	0	53	54	0	41	3	1.16
19733899--19733946	21	2.2	22	85	3	62	39	2	0	58	1.10
19734514--19734743	111	2.1	113	87	6	335	40	7	10	41	1.67
19735229--19735282	27	2.0	27	82	13	67	48	0	5	46	1.25
19741450--19741577	62	2.0	63	93	1	222	59	3	3	33	1.31
19741718--19741757	21	1.9	20	85	10	53	42	0	2	55	1.13
19743190--19743241	25	2.1	25	89	7	79	38	9	3	48	1.54
19746845--19746901	29	2.0	29	89	0	87	36	3	0	59	1.14
19753813--19753839	4	6.8	4	100	0	54	51	0	22	25	1.48
19754077--19754120	22	2.0	22	86	4	63	52	0	2	45	1.13
19754231--19754268	2	19.0	2	100	0	76	50	0	0	50	1.00
19754483--19754513	14	2.1	14	94	5	53	90	6	0	3	0.55
19754546--19754592	8	6.0	8	80	2	51	80	2	4	12	0.94
19754551--19754592	16	2.6	16	92	3	66	78	2	4	14	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19761261--19761321	19	3.2	19	75	9	61	59	3	0	37	1.14
19761364--19761403	13	2.8	13	85	14	53	40	2	0	57	1.12
19762007--19762058	17	2.8	17	80	11	50	34	3	1	59	1.27
19763138--19763207	12	5.7	12	74	17	63	32	0	0	67	0.91
19763154--19763207	18	2.9	18	76	17	65	35	0	0	64	0.94
19763150--19763207	6	9.7	6	75	17	50	34	0	0	65	0.93
19763154--19763207	13	4.3	13	79	6	67	35	0	0	64	0.94
19763153--19763217	30	2.1	32	85	8	89	40	0	0	60	0.97
19768660--19768702	22	2.0	22	91	8	72	48	16	13	20	1.80
19775405--19775435	10	3.1	10	100	0	62	51	9	19	19	1.74
19779682--19779726	22	2.0	23	86	4	65	57	0	0	42	0.98
19779781--19779846	24	2.8	24	81	4	71	59	6	4	30	1.42
19779775--19779837	14	4.8	14	72	20	55	61	6	3	28	1.36
19785591--19785634	18	2.2	20	88	11	65	2	11	0	86	0.66
19785591--19785636	20	2.2	21	88	3	67	2	10	0	86	0.64
19785901--19785942	16	2.4	18	80	19	61	40	0	0	59	0.97
19785909--19785942	16	2.1	16	100	0	68	41	0	0	58	0.98
19786524--19786551	14	2.0	14	100	0	56	64	14	0	21	1.29
19794735--19794829	48	2.0	48	97	0	181	27	24	8	40	1.84
19797755--19797794	20	2.0	20	85	4	55	37	10	45	7	1.66
19798039--19798071	2	16.5	2	93	0	57	45	0	3	51	1.16
19799874--19799901	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19809210--19809254	22	2.0	22	100	0	90	17	17	8	55	1.67
19810395--19810464	36	2.0	35	88	2	104	34	0	5	60	1.21
19810937--19811006	30	2.2	34	85	10	94	38	0	1	60	1.06
19810978--19811031	21	2.6	21	88	11	85	46	0	0	53	1.00
19810978--19811030	22	2.5	22	93	6	92	47	0	0	52	1.00
19823124--19823155	17	1.9	16	93	6	55	65	3	0	31	1.08
19823223--19823266	21	2.0	20	87	12	61	56	0	0	43	0.99
19824001--19824186	30	6.0	31	75	11	114	15	54	8	21	1.67
19824110--19824159	15	3.3	15	80	0	55	8	58	10	24	1.57
19826832--19826892	25	2.5	26	81	10	74	29	4	1	63	1.24
19830157--19830183	12	2.2	12	100	0	54	70	0	0	29	0.88
19837154--19837193	11	3.8	10	84	12	53	0	17	0	82	0.67
19837154--19837195	16	2.6	16	88	7	59	0	19	0	80	0.70
19837154--19837195	22	1.9	22	90	9	68	0	19	0	80	0.70
19838908--19838951	17	2.6	17	78	7	54	72	13	0	13	1.12
19839884--19839936	16	3.2	17	81	7	65	86	11	0	1	0.64
19839883--19839936	27	2.0	27	92	3	90	85	11	0	3	0.73
19841214--19841285	34	2.1	34	100	0	144	44	11	20	23	1.84
19843165--19843204	21	1.9	21	90	10	64	82	0	15	2	0.77
19843166--19843205	12	3.2	12	86	13	55	82	0	15	2	0.77
19844858--19844968	42	2.6	42	75	5	116	24	14	20	40	1.90
19844917--19845006	42	2.1	42	81	4	101	23	12	24	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19844858--19845015	84	1.9	86	81	5	196	24	14	20	40	1.90
19845055--19845084	14	2.1	14	100	0	60	30	10	26	33	1.89
19844980--19845157	89	2.0	89	87	2	259	23	14	23	39	1.91
19845069--19845241	75	2.3	76	88	4	253	21	15	21	41	1.90
19845202--19845359	42	4.0	42	69	21	133	24	14	22	38	1.92
19845230--19845507	75	3.7	75	86	4	382	25	14	21	39	1.90
19845127--19845359	117	2.0	117	86	3	326	23	14	22	39	1.90
19845073--19845438	192	1.9	189	83	6	470	23	14	22	39	1.91
19845722--19845835	49	2.3	50	86	1	149	28	13	19	38	1.89
19845706--19845867	50	3.3	50	81	2	175	29	9	18	42	1.81
19845855--19845880	13	2.0	13	100	0	52	38	0	15	46	1.46
19845803--19845930	63	2.0	63	87	3	186	29	8	21	39	1.83
19845868--19846130	50	5.3	50	85	3	295	30	12	19	37	1.88
19845754--19845976	113	2.0	113	82	5	272	30	11	20	37	1.88
19845868--19846132	146	1.8	147	82	4	338	30	12	19	37	1.89
19847145--19847193	23	2.0	24	84	7	64	36	0	4	59	1.17
19847170--19847210	21	2.0	21	85	0	55	31	0	2	65	1.05
19848840--19848891	25	2.0	26	96	3	97	50	30	3	15	1.62
19849573--19849613	12	3.7	12	75	18	52	53	14	7	24	1.66
19849731--19849774	17	2.6	17	88	0	70	68	9	9	13	1.40
19861658--19861760	34	3.1	33	79	5	111	39	5	5	48	1.51
19866254--19866308	20	2.7	21	81	18	64	63	1	0	34	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19866345--19866385	21	2.0	21	85	9	57	41	4	0	53	1.22
19866990--19867037	24	2.0	25	83	4	62	35	2	4	58	1.29
19868155--19868244	22	4.2	22	73	10	64	48	2	0	48	1.13
19868176--19868238	33	1.9	32	84	15	85	47	3	0	49	1.17
19868999--19869038	15	2.5	16	88	12	64	55	0	0	45	0.99
19869183--19869257	37	2.0	37	86	2	105	38	24	24	13	1.91
19869192--19869258	21	3.4	21	66	19	63	37	20	25	16	1.93
19869191--19869266	37	2.1	37	94	0	134	35	23	25	15	1.94
19871937--19871969	2	16.5	2	100	0	66	48	0	0	51	1.00
19872560--19872589	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129