genome.fa.s24.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  43  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5807676--5810611	905	3.3	887	82	6	3671	25	24	24	25	2.00
5813266--5813318	26	2.0	26	96	0	97	26	24	20	28	1.99
5814169--5814221	26	2.0	26	88	0	79	28	20	20	30	1.98
5812820--5815455	903	2.9	898	90	1	3977	25	24	24	24	2.00
5815062--5815114	26	2.0	26	96	0	97	26	20	20	32	1.98
5815458--5815510	26	2.0	26	85	7	72	28	20	22	28	1.99
5815056--5815849	394	2.0	396	89	1	1202	22	24	26	25	2.00
5815956--5816005	26	1.9	26	95	0	91	28	24	20	28	1.99
5816138--5816190	26	2.0	26	92	0	88	26	24	22	26	2.00
5817037--5817089	26	2.0	26	100	0	106	26	22	20	30	1.98
5817738--5817788	26	2.0	26	92	0	84	29	23	19	27	1.98
5817869--5817901	11	3.0	11	95	0	57	18	36	33	12	1.88
5816843--5818246	709	2.0	700	88	2	2089	22	25	25	25	2.00
5818770--5820808	879	2.3	876	87	2	2897	23	25	25	25	2.00
5820987--5821039	26	2.0	26	96	0	97	24	26	20	28	1.99
5820901--5825783	885	5.5	884	85	5	5779	25	24	24	25	2.00
5824550--5824602	26	2.0	26	96	0	97	28	26	18	26	1.98
5826167--5826219	26	2.0	26	96	0	97	26	24	20	28	1.99
5828477--5828529	26	2.0	26	96	0	97	26	24	20	28	1.99
5826715--5829265	899	2.9	894	87	3	3647	25	24	24	25	2.00
5828503--5829955	697	2.1	702	88	2	2181	26	23	22	26	2.00
5830065--5830115	26	2.0	26	96	0	93	25	25	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5829210--5830830	892	1.8	881	89	2	2575	25	24	23	26	2.00
5830091--5831545	694	2.1	702	88	4	2127	26	23	23	26	2.00
5833893--5833945	26	2.0	26	88	0	79	28	22	22	26	1.99
5834339--5836635	777	3.0	759	81	7	2860	23	25	25	25	2.00
5837131--5837183	26	2.0	26	92	0	88	30	24	18	26	1.98
5837559--5837606	24	2.0	24	88	8	71	8	45	29	16	1.76
5838556--5838608	26	2.0	26	100	0	106	26	26	20	26	1.99
5840365--5840417	26	2.0	26	92	0	88	28	22	22	26	1.99
5841263--5841315	26	2.0	26	96	0	97	26	26	18	28	1.98
5837578--5842041	899	4.9	898	87	2	6060	25	24	23	25	2.00
5843802--5845954	903	2.4	897	87	3	3099	26	24	23	26	2.00
5846586--5847039	57	7.7	58	84	6	583	34	12	7	45	1.69
5846795--5846972	64	2.9	64	84	8	208	35	12	5	46	1.66
5847077--5847139	16	3.9	15	76	12	63	77	1	6	14	1.03
5847072--5847157	6	14.3	6	73	17	54	76	1	6	15	1.05
5847103--5847156	27	2.0	28	89	10	85	77	1	7	12	1.05
5847065--5847231	11	14.5	11	67	22	67	74	3	4	17	1.13
5847182--5847231	16	2.9	17	82	8	57	80	4	0	16	0.87
5847182--5847230	24	2.1	23	88	11	73	81	4	0	14	0.83
5848039--5848077	20	2.0	20	84	0	51	69	0	7	23	1.14
5848120--5848241	18	7.1	17	67	17	65	71	3	1	23	1.10
5848124--5848164	15	2.8	15	85	10	50	80	4	0	14	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5848213--5848242	6	4.8	6	95	4	51	80	0	0	20	0.72
5848403--5848444	13	3.3	13	90	9	61	0	4	7	88	0.64
5848536--5848567	13	2.5	13	94	0	55	0	3	6	90	0.53
5848516--5848551	18	1.9	19	88	5	56	2	8	5	83	0.89
5848536--5848567	14	2.4	13	94	5	55	0	3	6	90	0.53
5848645--5848683	17	2.3	17	83	12	53	5	0	5	89	0.58
5848528--5848789	115	2.2	118	88	6	383	25	12	12	49	1.76
5848761--5848794	16	2.1	16	94	0	59	2	2	5	88	0.70
5848574--5848831	115	2.4	109	82	8	296	29	15	14	40	1.87
5848798--5849074	41	6.7	41	89	2	412	33	22	18	24	1.96
5848798--5849074	83	3.4	82	88	3	412	33	22	18	24	1.96
5849050--5849102	28	1.9	27	88	3	79	28	33	15	22	1.94
5849077--5849161	41	2.0	42	93	2	145	32	23	18	24	1.97
5849008--5849143	69	2.0	70	91	2	222	33	27	16	22	1.95
5849361--5849497	43	3.2	42	76	13	136	34	16	13	36	1.87
5849681--5849739	22	2.7	22	84	7	75	33	18	8	38	1.81
5850811--5850865	9	6.1	9	79	8	67	7	14	0	78	0.96
5850820--5850892	19	3.7	19	81	15	94	6	17	0	75	1.02
5853780--5854119	59	5.7	58	82	9	398	33	12	9	45	1.74
5853785--5854115	124	2.7	121	84	10	444	33	12	8	45	1.72
5854154--5854215	16	3.9	15	77	10	61	79	1	6	12	1.00
5854140--5854237	22	4.0	23	78	13	90	76	1	7	15	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5854147--5854233	6	14.3	6	73	14	54	77	1	6	14	1.04
5854140--5854227	32	2.7	33	82	7	99	76	1	7	14	1.07
5854140--5854296	10	13.9	11	69	18	76	73	3	4	17	1.15
5854179--5854232	27	2.0	28	89	10	85	77	1	7	12	1.05
5855187--5855344	6	25.0	6	69	19	65	72	2	1	24	1.05
5855131--5855289	28	5.6	26	71	18	88	71	1	2	23	1.08
5855213--5855258	16	2.7	18	87	12	71	80	2	0	17	0.81
5855183--5855341	27	6.0	26	70	17	98	72	2	1	23	1.04
5855188--5855341	65	2.4	61	75	10	157	72	2	1	24	1.05
5855304--5855358	18	2.9	18	84	15	67	76	1	3	18	1.02
5855686--5855738	26	2.0	26	96	0	97	26	24	20	28	1.99
5857269--5857320	26	2.0	26	84	0	68	30	23	15	30	1.95
5857009--5857606	311	1.9	316	84	6	807	19	31	25	23	1.98
5858454--5858506	26	2.0	26	96	0	97	26	24	20	28	1.99
5858587--5858619	11	3.0	11	95	0	57	18	30	36	15	1.91
5859651--5859707	26	2.2	26	83	0	69	61	10	5	22	1.48
5860685--5860735	26	2.0	26	100	0	102	27	25	19	27	1.99
5862132--5862184	26	2.0	26	96	0	97	28	20	24	26	1.99
5863029--5863081	26	2.0	26	92	0	88	28	22	20	28	1.99
5862691--5863482	395	2.0	393	88	1	1158	26	26	23	22	2.00
5863424--5863476	26	2.0	26	92	0	88	32	18	20	28	1.97
5864316--5864368	26	2.0	26	88	0	79	30	20	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5865221--5865273	26	2.0	26	96	0	97	28	20	24	26	1.99
5863084--5865713	901	2.9	896	88	2	3803	25	24	24	26	2.00
5865983--5866353	184	2.0	185	90	3	584	26	21	29	22	1.99
5867585--5867637	26	2.0	26	88	0	79	30	18	24	26	1.98
5868394--5868446	26	2.0	26	88	0	79	24	20	26	28	1.99
5869283--5869335	26	2.0	26	92	0	88	30	20	22	26	1.98
5869971--5871326	720	1.9	705	86	7	1933	26	22	23	28	1.99
5872184--5872233	26	1.9	26	95	0	91	28	22	28	22	1.99
5873951--5874003	26	2.0	26	85	0	70	26	20	24	28	1.99
5870601--5877474	837	7.9	874	81	8	7023	25	23	24	25	2.00
5876519--5876571	26	2.0	26	92	0	88	30	20	22	26	1.98
5877418--5877469	25	2.0	26	92	3	88	26	17	25	30	1.97
5879448--5879501	26	2.1	26	96	0	99	27	20	25	25	1.99
5879420--5879814	178	2.2	180	84	4	510	23	29	24	21	1.99
5880529--5880581	26	2.0	26	92	0	88	28	18	24	28	1.98
5881423--5881474	26	2.0	26	88	7	79	26	15	25	32	1.95
5879637--5884122	894	5.0	892	87	3	6021	25	24	24	25	2.00
5882317--5882369	26	2.0	26	100	0	106	26	20	26	26	1.99
5883201--5883253	26	2.0	26	89	7	81	33	20	16	28	1.95
5883357--5885556	711	3.1	711	87	4	3113	25	22	23	27	2.00
5885530--5885582	26	2.0	26	100	0	106	26	20	26	26	1.99
5885972--5887960	717	2.8	716	89	1	2989	25	22	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5889361--5889413	26	2.0	26	96	0	97	26	18	26	28	1.98
5889174--5889522	185	1.9	185	81	2	423	23	26	27	22	1.99
5889174--5889564	185	2.1	185	80	1	417	24	26	26	22	2.00
5890260--5890312	26	2.0	26	92	0	88	26	16	28	28	1.97
5891159--5891211	26	2.0	26	96	0	97	24	20	26	28	1.99
5889355--5891552	897	2.4	894	88	2	3373	25	24	25	25	2.00
5895336--5895387	25	2.0	26	96	3	97	25	21	26	26	1.99
5893713--5895885	896	2.4	896	86	3	3011	25	23	25	26	2.00
5896075--5896127	26	2.0	26	92	0	88	26	18	24	30	1.98
5897003--5897055	26	2.0	26	88	0	79	30	18	22	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129