genome.fa.s24.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  122  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20810620--20810690	36	2.0	36	100	0	142	16	14	23	45	1.84
20822649--20822701	22	2.6	21	88	11	83	49	0	1	49	1.12
20833283--20833317	11	3.3	10	88	11	52	40	0	0	60	0.97
20833283--20833317	5	6.6	5	87	12	52	40	0	0	60	0.97
20833283--20833317	16	2.2	16	94	0	61	40	0	0	60	0.97
20834575--20834685	34	3.3	35	75	10	106	46	3	4	45	1.40
20834677--20834726	16	2.9	16	85	11	55	42	2	12	44	1.53
20834702--20834798	34	2.9	32	84	13	117	43	3	6	47	1.44
20834749--20834811	14	4.1	14	74	21	63	42	1	1	53	1.19
20834717--20834812	34	2.9	33	86	9	117	42	2	4	51	1.33
20834698--20834812	32	3.5	31	77	15	115	42	2	5	49	1.39
20838762--20838811	22	2.3	22	82	6	57	44	8	0	48	1.32
20839892--20839926	15	2.3	15	95	0	61	34	0	28	37	1.58
20840632--20840664	3	11.0	3	100	0	66	66	0	0	33	0.92
20842750--20842774	8	3.1	8	100	0	50	60	0	0	40	0.97
20843073--20843148	16	4.6	16	69	18	57	39	0	1	59	1.06
20843100--20843149	14	3.4	14	78	10	55	40	0	2	58	1.10
20843102--20843163	30	2.1	30	84	0	79	43	0	1	54	1.09
20843136--20843187	22	2.5	22	93	6	90	50	0	0	50	1.00
20844880--20844931	22	2.5	22	93	6	90	50	0	0	50	1.00
20854275--20854340	24	2.6	25	79	11	64	45	4	0	50	1.22
20854290--20854340	24	2.1	24	86	13	70	43	5	0	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20854721--20854778	30	1.9	30	89	0	89	62	0	3	34	1.12
20854721--20854773	16	3.4	16	74	10	56	62	0	3	33	1.13
20858072--20858096	2	12.5	2	100	0	50	48	0	0	52	1.00
20867469--20867507	18	2.2	17	86	4	51	51	2	0	46	1.14
20873116--20873155	21	1.9	21	85	10	55	42	0	0	57	0.98
20875657--20875689	12	2.8	12	95	4	59	57	6	0	36	1.23
20876061--20876099	18	2.3	17	83	12	53	38	0	5	56	1.22
20876305--20876342	11	3.5	11	82	7	51	73	2	0	23	0.95
20876376--20876462	27	3.0	27	75	20	79	45	2	4	47	1.36
20876629--20876674	22	2.0	22	83	8	56	76	4	8	10	1.15
20884897--20884946	23	2.1	25	81	7	59	14	0	10	76	1.03
20887364--20887402	17	2.4	17	91	4	62	43	2	0	53	1.14
20889480--20889518	11	3.5	11	85	3	51	46	0	0	53	1.00
20892631--20892706	38	1.9	39	89	5	118	55	5	3	35	1.41
20900982--20901011	15	2.0	15	93	0	51	0	13	3	83	0.77
20902660--20902693	18	1.9	17	88	5	50	52	0	11	35	1.38
20903051--20903099	21	2.3	20	80	10	53	36	8	6	48	1.58
20904784--20904837	13	4.5	13	77	15	62	48	1	0	50	1.11
20906754--20906806	28	1.9	28	88	3	81	37	3	7	50	1.49
20908089--20908122	16	2.1	16	88	0	50	38	2	0	58	1.13
20911117--20911189	22	3.3	22	71	5	67	41	12	4	42	1.61
20911414--20911462	22	2.2	22	89	7	64	42	0	6	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20911463--20911528	22	3.0	22	82	8	64	39	4	10	45	1.59
20911390--20911540	78	1.9	78	80	10	175	38	4	9	47	1.58
20911514--20911559	22	2.1	22	83	0	56	39	10	8	41	1.71
20911661--20911721	22	2.8	22	82	7	70	34	8	8	49	1.62
20911964--20912005	22	2.0	21	85	4	57	33	21	4	40	1.74
20911981--20912302	22	14.3	23	73	13	174	38	8	7	45	1.63
20912186--20912316	66	2.0	66	80	3	147	37	9	7	45	1.65
20912432--20912485	22	2.5	22	81	6	65	40	14	1	42	1.57
20912452--20912823	22	17.2	22	70	15	116	34	9	6	49	1.62
20913145--20913483	22	15.8	22	71	12	161	33	8	6	51	1.57
20913392--20913485	11	8.5	11	70	6	57	35	5	5	54	1.46
20915880--20916157	151	1.8	149	80	10	314	46	6	7	38	1.60
20915888--20916644	252	3.0	252	95	1	1335	44	6	8	41	1.58
20926873--20926908	2	18.0	2	94	0	63	50	2	0	47	1.15
20931154--20931182	14	2.1	14	100	0	58	20	6	31	41	1.79
20934279--20934318	11	3.6	11	89	0	62	50	22	0	27	1.50
20934764--20934828	34	2.0	31	82	8	76	53	1	1	43	1.19
20935874--20935922	24	2.0	24	88	7	73	61	2	6	30	1.32
20936060--20936089	15	2.0	15	93	0	51	43	6	13	36	1.70
20936663--20936711	17	2.9	17	96	0	89	28	18	18	34	1.94
20938840--20938897	29	2.0	29	100	0	116	41	10	10	37	1.73
20940364--20940434	32	2.2	32	87	2	99	46	8	8	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20943153--20943195	18	2.4	18	80	0	50	37	0	0	62	0.95
20943140--20943216	31	2.5	30	80	6	82	42	1	1	54	1.16
20949390--20949420	2	15.5	2	93	0	53	51	0	0	48	1.00
20951285--20951329	15	2.8	16	78	21	58	51	4	2	42	1.34
20953179--20953211	13	2.5	13	95	0	57	21	0	0	78	0.75
20956438--20956477	16	2.7	14	88	7	53	55	0	0	45	0.99
20956443--20956483	8	5.1	8	87	0	64	58	0	0	41	0.98
20956443--20956491	24	2.0	24	88	0	71	61	0	0	38	0.96
20956482--20956506	13	1.9	13	100	0	50	64	0	0	36	0.94
20957923--20957970	2	24.0	2	91	0	78	50	4	0	45	1.21
20960106--20960143	20	1.9	20	84	10	51	47	0	2	50	1.15
20968998--20969382	193	2.0	191	94	2	682	34	19	18	28	1.95
20976804--20976876	34	2.1	34	87	0	101	56	12	0	31	1.36
20983308--20983393	19	4.4	18	76	15	57	58	2	1	38	1.19
20983287--20983378	22	4.0	22	78	4	85	53	2	2	42	1.25
20983328--20983368	12	3.6	12	83	12	59	53	0	2	43	1.13
20983366--20983408	14	3.0	14	83	12	52	60	2	2	34	1.22
20983302--20983403	44	2.3	44	78	8	111	57	1	0	39	1.16
20983411--20983448	20	1.9	20	94	0	67	60	2	7	28	1.38
20983368--20983448	15	5.5	14	76	12	56	59	2	4	33	1.32
20983501--20983538	15	2.5	15	87	8	51	71	2	2	23	1.12
20990204--20990248	13	3.8	12	88	8	65	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20990213--20990255	16	2.6	16	88	7	59	65	0	0	34	0.93
20990470--20990517	13	3.8	12	81	8	51	56	0	2	41	1.11
20992857--20993013	52	3.0	52	79	1	172	29	19	5	45	1.73
20993476--20993518	17	2.7	16	83	16	54	69	0	0	30	0.88
20993483--20993523	18	2.3	18	80	12	50	70	0	0	29	0.87
20993808--20993863	21	2.7	21	85	0	76	30	21	7	41	1.80
20994199--20994246	24	2.0	25	87	4	71	27	6	2	64	1.28
20996949--20996981	16	2.1	16	88	11	50	72	12	0	15	1.12
20997003--20997032	15	2.0	15	93	0	51	63	0	0	36	0.95
21003678--21004004	172	1.9	172	89	2	514	37	13	16	33	1.88
21006284--21006317	2	17.0	2	88	11	52	50	2	0	47	1.16
21007598--21007833	98	2.4	99	95	1	431	41	7	12	38	1.71
21007886--21008099	105	2.0	106	93	4	369	38	10	4	46	1.57
21011096--21011135	17	2.4	16	88	12	55	72	0	2	25	0.97
21013533--21013586	27	2.0	27	82	13	67	53	1	3	40	1.29
21014405--21014480	28	2.6	28	80	14	75	40	0	0	59	0.98
21014422--21014475	28	1.9	28	92	7	92	37	0	0	62	0.95
21015784--21015826	15	2.8	16	82	10	54	46	2	0	51	1.13
21020814--21021287	181	2.6	178	79	6	478	43	10	8	38	1.68
21020578--21021334	181	4.2	181	74	8	429	45	9	7	37	1.65
21020578--21021414	182	4.6	181	74	7	427	44	9	7	38	1.65
21026971--21027013	21	2.0	21	82	8	52	30	0	2	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21027823--21027857	14	2.3	16	90	9	56	57	0	0	42	0.99
21027840--21027883	23	2.0	22	86	4	61	40	2	2	54	1.25
21028230--21028279	22	2.3	22	86	6	66	46	2	6	46	1.39
21028218--21028307	27	3.5	26	80	8	94	46	4	4	44	1.43
21028229--21028309	27	3.0	28	85	5	96	45	4	4	44	1.46
21034421--21034463	21	2.1	20	86	4	59	65	2	0	32	1.06
21034490--21034526	18	2.0	19	89	5	58	29	2	0	67	1.04
21035050--21035085	19	1.9	18	88	5	54	77	0	0	22	0.76
21035134--21035201	34	2.0	35	82	8	86	58	1	0	39	1.07
21036986--21037040	28	2.0	28	100	0	110	38	3	21	36	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129