genome.fa.s24.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  121  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20545040--20545069	1	30.0	1	93	0	51	0	0	96	3	0.21
20547007--20547070	29	2.1	31	83	11	80	60	1	1	35	1.15
20547036--20547078	21	2.0	21	81	0	50	65	0	2	32	1.06
20550865--20550896	13	2.4	14	90	10	50	46	0	0	53	1.00
20557310--20557345	17	2.1	18	89	5	56	41	2	11	44	1.54
20558479--20558531	29	1.9	26	85	11	70	62	7	3	26	1.39
20558974--20559072	43	2.4	41	83	9	137	41	2	2	54	1.23
20562564--20562595	4	8.0	4	100	0	64	50	0	0	50	1.00
20569850--20569892	2	21.5	2	90	0	68	51	0	2	46	1.13
20578935--20579271	174	1.9	175	93	0	577	41	15	14	28	1.87
20580324--20580390	30	2.2	30	81	7	82	56	1	1	40	1.17
20585397--20585448	27	1.9	27	84	7	70	28	1	3	65	1.21
20585677--20585715	17	2.4	17	86	4	53	58	0	0	41	0.98
20586572--20586656	41	2.0	43	88	6	129	42	7	2	48	1.43
20586655--20586694	20	2.0	20	100	0	80	50	15	0	35	1.44
20586708--20586749	20	2.0	20	86	9	57	35	0	2	61	1.09
20588611--20588651	18	2.4	17	87	4	55	19	2	0	78	0.87
20591431--20591458	2	14.0	2	100	0	56	50	0	0	50	1.00
20591689--20591735	6	7.8	6	87	0	58	51	4	10	34	1.56
20594150--20594184	17	2.1	17	89	10	54	11	37	28	22	1.89
20594710--20594883	94	1.8	94	83	7	233	36	13	9	40	1.77
20595758--20595802	22	2.0	22	95	0	81	33	6	0	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20596631--20596770	3	48.7	3	72	18	111	28	2	2	66	1.17
20596726--20596772	5	9.4	5	86	9	69	21	0	0	78	0.75
20596727--20596785	30	2.0	30	83	6	75	25	0	1	72	0.93
20606588--20606617	13	2.4	12	89	10	51	83	0	6	10	0.81
20606590--20606648	30	1.9	30	86	10	84	76	0	11	11	1.03
20606590--20606659	30	2.2	30	82	12	79	75	0	14	10	1.04
20607678--20607887	41	5.0	41	81	7	199	24	15	20	38	1.92
20607709--20607887	40	4.3	39	80	9	151	25	15	21	36	1.93
20608066--20608094	13	2.1	14	93	6	51	17	0	3	79	0.87
20608083--20608235	28	5.7	27	69	18	95	30	3	0	65	1.15
20608115--20608314	3	65.3	3	72	20	107	30	3	0	66	1.11
20608072--20608303	55	4.6	49	71	18	138	29	3	0	67	1.09
20608071--20608312	6	35.3	7	71	18	117	29	2	0	67	1.08
20608087--20608234	78	1.9	81	84	12	209	31	4	0	64	1.17
20608076--20608314	78	3.1	76	73	20	189	29	2	0	66	1.09
20609063--20609107	4	12.2	4	92	4	53	28	0	0	71	0.87
20609176--20609299	61	2.1	60	83	5	155	40	4	11	43	1.62
20609352--20609395	14	3.0	14	80	9	52	6	15	2	75	1.12
20610058--20610117	29	2.1	29	87	3	86	60	0	1	38	1.07
20614779--20614838	28	2.1	28	81	6	68	50	3	0	46	1.18
20614850--20614891	18	2.3	18	84	8	50	50	11	2	35	1.52
20618457--20618491	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20620294--20620322	2	15.0	2	92	7	51	51	0	0	48	1.00
20622710--20622770	27	2.3	26	86	5	86	59	4	4	31	1.40
20624287--20624312	2	13.0	2	100	0	52	50	0	0	50	1.00
20626798--20626874	39	2.0	39	92	0	127	50	9	5	35	1.56
20627791--20627828	17	2.2	18	86	9	53	52	0	5	42	1.24
20628827--20628864	14	2.8	14	92	4	60	71	0	2	26	1.00
20629733--20630200	127	3.7	125	77	7	378	41	9	11	37	1.75
20634446--20634476	2	15.5	2	100	0	62	51	0	0	48	1.00
20638698--20638754	22	2.7	21	76	10	53	56	0	5	38	1.22
20638758--20638807	25	2.0	25	88	3	75	48	4	8	40	1.51
20644319--20644369	27	1.9	26	92	4	84	17	31	1	49	1.58
20644451--20644495	22	2.0	23	83	12	58	8	15	2	73	1.18
20645817--20646053	61	3.9	61	72	9	155	43	13	3	39	1.61
20646034--20646085	26	2.0	25	85	10	70	44	5	0	50	1.26
20646287--20646352	29	2.5	26	77	20	73	56	0	0	43	0.99
20648054--20648099	23	2.0	23	87	4	67	34	19	8	36	1.83
20655380--20655419	21	2.0	20	85	5	53	30	10	5	55	1.54
20660801--20660841	20	2.0	20	85	0	55	0	2	19	78	0.87
20662005--20662043	18	2.2	17	86	13	53	53	0	2	43	1.14
20662005--20662036	17	1.9	17	93	6	57	53	0	0	46	1.00
20662005--20662043	17	2.2	18	86	13	55	53	0	2	43	1.14
20663892--20663924	17	1.9	17	100	0	66	33	0	12	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20676655--20676712	26	2.2	26	81	0	71	36	5	0	58	1.20
20676757--20676864	32	3.7	30	71	20	77	30	1	0	66	1.08
20676794--20676844	25	2.1	24	85	10	68	31	0	0	68	0.90
20676794--20676856	24	2.6	25	78	16	71	31	0	0	68	0.90
20676863--20676919	22	2.7	20	76	15	60	50	0	1	47	1.11
20677438--20677473	18	2.0	18	88	0	54	61	0	0	38	0.96
20681895--20681919	13	1.9	13	100	0	50	60	0	0	40	0.97
20682054--20682084	15	2.0	16	93	6	55	51	19	6	22	1.69
20683517--20683798	36	7.8	36	82	2	325	21	29	20	28	1.98
20685951--20685990	20	2.1	20	86	9	57	30	5	7	57	1.48
20687500--20687546	24	1.9	25	86	4	69	48	0	0	51	1.00
20710836--20710883	14	3.2	16	75	16	50	47	4	2	45	1.33
20711566--20711611	22	2.0	23	88	12	69	54	0	0	45	0.99
20711583--20711638	14	3.8	16	73	20	50	51	0	1	46	1.11
20711591--20711639	14	3.4	14	80	5	53	48	0	2	48	1.12
20712224--20712260	18	2.0	19	89	5	58	51	0	0	48	1.00
20712205--20712278	39	1.9	38	83	8	96	60	0	0	39	0.97
20719078--20719124	22	2.0	23	88	8	69	19	8	10	61	1.53
20729786--20729834	24	2.0	24	84	7	64	32	14	14	38	1.86
20729993--20730022	10	3.1	10	95	4	53	63	0	0	36	0.95
20730405--20730447	20	2.0	21	86	8	61	62	2	2	32	1.20
20739577--20739638	31	2.0	31	100	0	124	35	22	19	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20742978--20743113	21	6.4	21	65	17	59	49	0	1	49	1.10
20743670--20743696	2	13.5	2	100	0	54	51	0	0	48	1.00
20744529--20744566	20	1.9	20	94	0	67	44	7	5	42	1.56
20744918--20745006	31	3.1	29	84	7	94	50	0	7	41	1.31
20744940--20745006	28	2.4	29	88	11	97	52	0	7	40	1.30
20745404--20745435	11	2.8	12	81	18	50	28	0	25	46	1.53
20745463--20745616	52	3.0	52	87	1	211	39	9	25	25	1.85
20746188--20746243	24	2.3	24	84	3	76	41	5	30	23	1.76
20746155--20746264	25	4.4	25	72	6	80	40	3	31	24	1.73
20746507--20746538	11	2.9	11	90	0	55	25	0	28	46	1.53
20746708--20746739	11	2.9	11	90	0	55	25	0	28	46	1.53
20746384--20746799	201	2.1	201	97	0	789	33	10	26	29	1.89
20746764--20746920	52	3.0	52	86	1	208	40	8	24	26	1.84
20749025--20749057	17	1.9	17	93	0	57	54	0	9	36	1.32
20749010--20749317	165	1.9	164	85	3	431	43	2	9	44	1.51
20749010--20749358	165	2.1	164	82	5	402	43	2	9	44	1.49
20749379--20749423	22	2.0	22	100	0	90	48	8	0	42	1.34
20749556--20749594	2	19.5	2	89	0	60	51	5	0	43	1.24
20755888--20755941	22	2.4	22	90	3	81	50	3	0	46	1.19
20755930--20755964	18	1.9	18	88	0	52	60	2	0	37	1.12
20757307--20757341	2	18.0	2	94	5	63	48	0	0	51	1.00
20758772--20758802	2	15.5	2	93	0	53	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20766873--20767041	89	1.9	89	100	0	338	23	11	21	44	1.84
20769948--20770042	50	1.9	50	88	0	145	37	14	17	29	1.90
20792415--20792476	28	2.3	28	86	5	83	48	1	3	46	1.28
20793389--20793421	16	2.1	16	88	5	50	27	0	0	72	0.85
20793540--20793576	15	2.6	14	91	4	56	37	0	0	62	0.96
20793526--20793584	25	2.4	24	78	15	66	38	0	0	61	0.96
20793534--20793630	36	2.7	36	80	13	103	37	1	2	59	1.16
20799163--20799194	2	16.0	2	100	0	64	50	0	0	50	1.00
20799487--20799533	18	2.5	19	82	6	60	61	0	0	38	0.96
20801092--20801123	12	2.4	14	90	10	50	62	0	9	28	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129