genome.fa.s24.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  81  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12954698--12954792	30	3.2	29	75	7	84	52	3	3	41	1.33
12954950--12955010	31	2.0	31	83	6	79	44	1	1	52	1.20
12954978--12955040	23	3.0	21	81	9	58	50	1	1	46	1.20
12955057--12955104	18	2.7	18	87	6	62	35	2	0	62	1.07
12955064--12955104	18	2.3	18	91	4	66	34	2	0	63	1.08
12957300--12957421	60	2.0	60	91	0	199	29	19	17	33	1.95
12959947--12959988	2	21.0	2	100	0	84	50	0	0	50	1.00
12961399--12961453	6	8.7	6	77	18	58	80	1	14	3	0.94
12961399--12961453	13	4.3	13	80	8	60	80	1	14	3	0.94
12961399--12961455	18	2.9	19	87	12	73	78	1	15	3	0.96
12961491--12961537	19	2.2	20	82	14	51	63	4	6	25	1.36
12963136--12964328	297	4.0	297	97	0	2233	36	17	16	29	1.92
12963136--12964328	595	2.0	595	97	0	2253	36	17	16	29	1.92
12972963--12973010	3	16.3	3	82	4	53	35	0	0	64	0.94
12973509--12973593	24	3.4	25	72	18	70	38	0	1	60	1.05
12973583--12973634	22	2.5	22	93	6	90	50	0	0	50	1.00
12974600--12974639	18	2.1	18	90	9	62	32	0	0	67	0.91
12974599--12974640	10	4.7	9	81	18	52	33	0	0	66	0.92
12975221--12975287	35	1.9	36	87	6	102	47	1	5	44	1.36
12975688--12976002	128	2.5	128	81	8	356	44	5	6	43	1.54
12975781--12975991	68	3.2	66	69	17	170	42	3	6	47	1.44
12978839--12978896	16	3.6	16	72	9	55	74	3	5	17	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12979199--12979415	43	5.1	44	79	12	193	45	20	10	23	1.82
12980070--12980127	22	2.6	22	83	5	73	37	18	8	34	1.82
12980170--12980231	22	2.9	22	88	7	83	38	9	6	45	1.63
12980177--12980268	22	4.3	21	76	12	64	41	11	5	41	1.65
12980235--12980298	32	2.0	32	90	0	101	43	14	6	35	1.70
12980194--12980611	66	5.8	76	73	17	273	42	14	6	36	1.72
12980266--12980380	22	5.2	22	90	2	185	42	15	7	33	1.76
12980266--12980749	44	10.6	44	77	10	443	41	14	7	36	1.73
12980389--12980554	22	7.6	22	86	0	226	42	15	7	35	1.74
12980168--12980507	123	2.8	119	83	6	436	42	13	6	36	1.71
12980389--12980749	66	5.4	66	84	9	435	41	13	6	37	1.72
12980505--12980606	53	1.9	54	91	2	170	40	14	6	38	1.73
12980551--12980749	22	9.2	22	81	2	197	40	13	6	39	1.71
12980181--12980765	141	4.2	141	72	14	143	41	13	6	37	1.71
12981891--12981958	10	7.0	10	75	12	70	7	13	0	79	0.93
12981891--12981958	19	3.6	18	78	11	73	7	13	0	79	0.93
12981899--12981944	11	4.3	11	91	5	67	4	13	0	82	0.81
12986004--12986051	24	2.0	25	87	4	71	33	12	8	45	1.72
12986524--12986554	16	1.9	16	93	0	53	67	3	0	29	1.06
12986520--12986552	12	2.5	14	90	9	52	66	3	0	30	1.06
12986997--12987061	31	2.1	30	86	8	87	52	21	7	18	1.70
12987187--12987219	15	2.1	16	94	5	59	15	9	6	69	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12991187--12991217	13	2.4	13	88	0	53	67	9	0	22	1.19
12998741--12998770	3	10.0	3	100	0	60	33	0	0	66	0.92
13000081--13000114	2	17.0	2	93	0	50	44	5	0	50	1.26
13001968--13002019	17	3.1	17	75	8	54	59	0	0	40	0.97
13004805--13004834	2	15.0	2	92	0	51	46	0	3	50	1.18
13010228--13010266	7	5.7	7	87	6	53	84	0	0	15	0.62
13012849--13012873	13	1.9	13	100	0	50	68	0	8	24	1.16
13013103--13013178	13	5.9	13	84	1	82	55	22	5	17	1.62
13013103--13013178	39	2.0	38	89	2	116	55	22	5	17	1.62
13018951--13019063	11	9.5	11	69	15	55	17	7	3	70	1.26
13031199--13031422	120	1.9	119	84	4	299	37	11	14	36	1.82
13032298--13032327	15	2.1	14	93	6	51	63	0	0	36	0.95
13034696--13034775	12	6.2	12	76	13	79	50	28	2	18	1.60
13034707--13034794	28	3.3	27	80	9	85	51	28	1	19	1.54
13035309--13035495	65	2.9	62	78	15	186	41	8	11	39	1.70
13035309--13035535	63	3.6	61	75	13	185	40	8	11	39	1.72
13035945--13036085	62	2.3	62	80	9	162	39	8	17	34	1.80
13036507--13036532	7	3.7	7	100	0	52	30	57	0	11	1.34
13042209--13042514	161	1.9	160	82	6	377	32	9	14	43	1.78
13045961--13048284	907	2.5	908	81	3	2557	35	8	20	35	1.82
13051069--13051113	23	2.0	23	86	8	65	46	6	31	15	1.72
13054085--13054135	21	2.6	19	85	14	77	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13054352--13054386	17	2.1	17	100	0	70	45	17	11	25	1.81
13054838--13054893	28	1.9	29	85	7	78	32	1	7	58	1.35
13054835--13054893	30	2.0	29	87	9	84	30	3	6	59	1.40
13061417--13061480	32	2.0	32	96	0	119	28	20	9	42	1.83
13077730--13077787	24	2.5	24	76	18	59	56	1	3	37	1.26
13077787--13077910	37	3.2	37	77	11	126	51	1	0	46	1.10
13078450--13078484	13	2.8	12	87	8	52	20	0	2	77	0.90
13078450--13078484	6	5.7	6	90	6	52	20	0	2	77	0.90
13084794--13084857	32	2.0	32	96	0	119	28	20	9	42	1.83
13089396--13089440	21	2.1	21	83	0	54	57	2	0	40	1.11
13099007--13099051	2	22.5	2	100	0	90	51	0	48	0	1.00
13099331--13099375	19	2.3	20	84	3	56	64	2	2	31	1.18
13101134--13101289	18	8.3	18	65	22	54	56	1	0	42	1.07
13101121--13101178	24	2.5	24	76	18	59	58	1	1	37	1.18
13101221--13101275	25	2.2	25	77	3	58	54	3	0	41	1.18
13107387--13107446	30	2.0	30	90	0	93	45	6	13	35	1.70
13110288--13110317	12	2.5	12	88	0	51	23	23	43	10	1.83
13123760--13123785	11	2.4	11	100	0	52	65	15	19	0	1.27
13124760--13124812	19	2.9	19	78	15	67	43	0	0	56	0.99
13124765--13124835	25	2.9	22	71	21	52	49	0	0	50	1.00
13124851--13124891	20	2.0	21	85	4	57	75	0	0	24	0.80
13128251--13128293	11	3.7	11	81	9	50	32	4	0	62	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13128260--13128303	20	2.3	19	88	4	61	38	6	0	54	1.27
13130241--13130312	31	2.3	31	100	0	144	44	15	6	33	1.73
13133227--13133266	20	2.0	20	100	0	80	40	10	15	35	1.80
13134763--13134808	3	15.3	3	81	0	56	39	0	2	58	1.10
13135507--13135909	111	3.6	111	84	5	444	48	11	20	19	1.79
13135507--13135865	36	9.8	36	71	12	185	48	12	20	18	1.80
13138492--13138552	28	2.2	28	100	0	122	18	18	27	36	1.94
13139691--13139723	3	11.0	3	100	0	66	33	0	0	66	0.92
13145293--13145346	26	2.1	26	89	0	81	18	18	20	42	1.89
13146790--13146816	3	9.0	3	100	0	54	33	0	0	66	0.92
13147024--13147061	14	2.6	15	80	20	53	42	0	0	57	0.98
13147726--13147774	25	2.0	25	95	0	89	51	0	6	42	1.27
13154677--13154732	28	2.0	28	86	6	78	28	3	0	67	1.07
13155320--13155372	22	2.4	22	75	6	54	35	9	15	39	1.79
13162661--13162700	2	20.0	2	100	0	80	50	0	0	50	1.00
13165031--13165129	31	3.1	32	76	14	105	48	0	0	51	1.00
13165050--13165099	25	2.0	24	88	3	73	46	0	0	54	1.00
13165059--13165145	31	3.1	29	73	20	85	50	0	0	49	1.00
13176050--13176216	86	1.9	87	91	1	273	34	13	22	29	1.92
13182379--13182416	2	19.0	2	94	0	67	47	0	0	52	1.00
13186659--13186705	2	23.5	2	100	0	94	48	0	51	0	1.00
13193303--13193357	24	2.4	23	87	6	76	45	1	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13193303--13193368	24	3.0	22	82	10	71	43	1	1	53	1.19
13201091--13201980	294	3.0	295	94	4	1598	26	15	24	33	1.95
13202225--13202271	22	2.2	22	84	3	60	42	0	2	55	1.12
13202530--13202568	18	2.2	18	90	0	60	41	7	15	35	1.76
13206158--13206205	24	2.0	23	88	4	69	43	8	25	22	1.81
13206149--13206199	12	4.2	12	79	0	57	37	9	27	25	1.87
13208885--13209022	33	4.1	34	77	8	124	23	30	3	42	1.71
13209012--13209117	41	2.5	42	90	4	162	21	28	5	44	1.75
13209867--13210402	176	3.1	173	80	6	591	26	8	17	47	1.76
13213431--13213459	15	2.0	15	93	6	51	34	6	13	44	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129