genome.fa.s24.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  68  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10456361--10456387	12	2.2	12	100	0	54	14	0	0	85	0.61
10463087--10463145	30	1.9	32	89	6	95	20	18	1	59	1.47
10466431--10466527	50	1.9	51	83	8	126	30	11	16	41	1.84
10470436--10470498	25	2.5	25	82	5	65	44	1	3	50	1.27
10476394--10476539	75	1.9	75	91	0	238	37	10	19	32	1.86
10479235--10479333	50	1.9	49	81	18	114	50	4	3	42	1.36
10483048--10483096	23	2.1	23	96	0	89	28	24	20	26	1.99
10488164--10488230	22	3.0	23	80	10	68	37	2	1	58	1.23
10488238--10488297	24	2.6	23	79	10	68	51	3	0	45	1.17
10488837--10488919	34	2.3	35	78	11	82	53	2	4	39	1.35
10489446--10489486	21	2.0	21	85	9	57	58	9	4	26	1.50
10489902--10489952	25	2.0	25	85	7	68	50	7	3	37	1.50
10490226--10490306	34	2.4	34	81	4	92	48	2	8	40	1.47
10491241--10491307	34	2.0	34	85	5	91	50	5	8	34	1.58
10489316--10493291	510	7.9	505	87	3	5620	47	9	7	35	1.64
10492246--10492322	34	2.3	34	79	6	93	53	3	7	35	1.48
10494847--10494878	9	3.7	9	91	8	57	78	0	0	21	0.76
10506016--10506059	7	6.4	7	86	2	54	65	0	20	13	1.26
10506013--10506054	14	3.0	14	96	0	75	61	0	23	14	1.32
10506016--10506059	21	2.2	20	91	4	70	65	0	20	13	1.26
10510817--10510855	13	2.9	14	84	7	53	53	10	0	35	1.35
10512701--10512733	17	1.9	17	88	11	50	18	9	12	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10513478--10513520	22	2.0	22	95	0	77	32	27	4	34	1.78
10518415--10518461	22	2.1	22	88	0	67	36	17	4	42	1.68
10521448--10521541	39	2.4	39	89	3	127	35	32	6	25	1.81
10524935--10525028	39	2.4	39	89	3	127	35	32	6	25	1.81
10528328--10528399	35	2.1	35	92	5	119	29	11	16	43	1.82
10533099--10533141	2	22.0	2	80	4	52	51	6	0	41	1.29
10533097--10533141	12	3.8	12	91	2	65	51	8	0	40	1.33
10533097--10533138	6	7.2	6	91	5	59	52	9	0	38	1.34
10545398--10545427	2	15.0	2	100	0	60	50	0	50	0	1.00
10554403--10554453	17	2.9	17	77	13	59	64	5	0	29	1.17
10554800--10555045	123	2.0	123	97	0	465	28	15	17	38	1.90
10559449--10559520	34	2.1	34	94	0	126	29	4	31	34	1.77
10561366--10561484	29	3.6	31	77	14	98	48	1	1	47	1.21
10561366--10561442	31	2.6	29	85	4	91	45	1	2	50	1.23
10562579--10562613	3	11.7	3	93	0	61	31	0	2	65	1.07
10563251--10563281	3	10.3	3	100	0	62	35	0	0	64	0.94
10563626--10563658	11	2.8	12	90	9	59	42	0	0	57	0.98
10563622--10563657	11	3.4	11	92	3	56	47	0	0	52	1.00
10564019--10564079	8	7.0	8	73	15	50	27	1	3	67	1.16
10564331--10564366	19	1.9	18	88	5	54	38	0	2	58	1.13
10570306--10570348	15	2.9	14	83	10	59	41	9	9	39	1.69
10576825--10576866	15	2.9	14	83	16	50	16	2	2	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10578097--10578161	8	8.4	8	75	8	55	10	3	4	81	0.95
10578129--10578170	22	1.9	22	85	0	57	9	2	7	80	0.97
10578673--10578853	100	1.8	99	87	3	274	43	16	11	29	1.82
10578557--10579128	50	11.4	50	71	13	206	40	14	10	33	1.81
10578871--10579013	52	2.7	52	85	4	169	43	16	9	30	1.80
10578874--10579065	54	3.6	53	80	9	183	42	14	10	31	1.80
10578872--10579065	106	1.8	107	82	6	250	42	14	10	31	1.81
10578905--10579162	49	5.1	49	78	5	183	41	13	11	33	1.81
10579273--10579407	42	3.2	41	80	11	148	42	20	10	27	1.84
10579388--10579671	99	2.9	99	82	3	295	42	20	11	25	1.85
10579595--10579719	57	2.2	57	81	4	144	42	23	12	21	1.87
10579689--10579839	66	2.3	67	84	4	198	43	24	11	20	1.84
10579978--10580024	19	2.5	19	100	0	94	53	6	23	17	1.66
10580063--10580273	99	2.1	99	80	8	239	43	17	12	26	1.84
10580788--10580824	18	2.1	18	100	0	74	43	18	16	21	1.88
10582549--10582593	17	2.7	16	80	10	54	0	8	4	86	0.69
10586520--10586577	28	2.1	28	96	0	107	56	3	5	34	1.38
10588459--10588520	30	2.0	31	87	9	92	30	8	45	16	1.76
10590213--10590289	25	2.9	28	86	11	124	35	7	20	36	1.82
10596641--10596674	3	11.3	3	100	0	68	35	0	0	64	0.94
10599319--10599352	16	2.1	17	88	5	52	29	8	0	61	1.26
10599395--10599441	20	2.3	21	78	10	53	70	2	2	25	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10603531--10603560	16	1.9	15	93	6	51	50	0	0	50	1.00
10604563--10604601	18	2.2	17	86	4	51	64	2	2	30	1.21
10611096--10611163	24	2.8	23	78	8	64	45	5	0	48	1.26
10611279--10611347	31	2.3	30	82	9	86	40	4	4	50	1.42
10611343--10611404	22	2.8	22	82	2	79	41	1	0	56	1.09
10611436--10611475	19	2.1	19	85	0	53	55	2	0	42	1.13
10611603--10611658	22	2.5	23	80	11	62	55	1	3	39	1.28
10619793--10619912	13	9.2	13	69	10	75	41	36	4	17	1.69
10619796--10619861	35	1.9	33	87	6	96	43	36	3	16	1.64
10619746--10619915	20	8.6	20	72	11	102	43	37	3	15	1.64
10619987--10620036	18	2.8	18	75	6	57	30	18	6	46	1.73
10630242--10630297	17	2.9	19	77	17	53	64	8	1	25	1.32
10630455--10630517	25	2.6	24	77	5	63	42	6	0	50	1.27
10630638--10630706	31	2.3	30	82	9	86	40	4	4	50	1.42
10630793--10630832	19	2.1	19	85	0	53	55	2	0	42	1.13
10638043--10638089	24	1.9	25	86	4	69	63	4	17	14	1.45
10639089--10639296	7	31.6	7	64	19	56	43	35	2	17	1.64
10639089--10639148	27	2.2	27	80	16	63	48	38	1	11	1.50
10639138--10639240	13	7.8	13	68	11	57	43	33	2	20	1.67
10639086--10639279	20	9.8	20	70	14	93	43	36	3	17	1.65
10639232--10639278	19	2.5	19	100	0	94	38	38	4	19	1.71
10640239--10640286	9	5.4	9	80	5	62	75	2	8	14	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10641171--10641213	18	2.2	20	88	8	63	86	11	2	0	0.67
10641171--10641213	19	2.2	20	87	4	61	86	11	2	0	0.67
10641236--10641278	21	2.0	21	100	0	86	44	18	9	27	1.80
10641454--10641606	37	4.2	36	79	8	148	34	26	9	29	1.88
10641454--10641606	73	2.1	73	79	4	157	34	26	9	29	1.88
10643499--10643559	31	1.9	31	83	3	77	83	3	9	3	0.87
10643518--10643573	20	2.8	21	81	5	71	82	3	10	3	0.92
10643955--10644003	21	2.3	20	80	13	53	71	4	18	6	1.23
10644614--10644661	26	1.9	25	87	8	71	31	14	14	39	1.86
10644775--10644835	24	2.5	24	86	5	88	19	13	27	39	1.89
10644801--10644986	58	3.2	57	81	6	180	22	15	20	41	1.89
10644943--10645017	33	2.3	33	79	6	89	24	13	18	44	1.85
10645640--10645684	20	2.2	21	80	11	58	51	11	8	28	1.68
10645864--10645896	12	2.5	13	90	9	50	42	9	9	39	1.68
10646689--10646729	12	3.4	12	80	12	57	70	2	9	17	1.25
10647673--10647754	25	3.2	27	81	11	75	43	37	2	15	1.60
10647710--10647782	13	5.6	14	75	14	66	45	35	2	16	1.62
10647695--10647782	25	3.4	25	88	4	113	43	37	2	17	1.61
10648270--10648317	16	3.0	15	85	11	60	81	2	16	0	0.79
10648279--10648317	14	2.8	13	88	11	60	82	0	17	0	0.68
10650100--10650346	84	3.0	81	76	13	236	25	8	9	55	1.60
10650741--10650775	17	2.1	17	88	0	52	11	8	8	71	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10654201--10654395	103	1.9	101	85	6	268	33	8	8	49	1.64
10654391--10654825	161	2.7	160	80	5	480	38	9	11	40	1.74
10654727--10654889	61	2.6	63	80	5	179	40	14	10	34	1.80
10655903--10655933	15	2.0	16	93	6	55	48	12	12	25	1.77
10660129--10660161	17	1.9	17	88	11	50	45	3	3	48	1.33
10660261--10660298	20	1.9	20	89	10	60	60	0	2	36	1.11
10663528--10663567	12	3.2	12	89	10	55	20	0	10	70	1.16
10667703--10667762	22	2.7	24	76	21	67	38	1	0	60	1.07
10667708--10667768	21	2.8	21	80	12	61	37	1	0	60	1.07
10668873--10668908	3	11.7	3	94	5	63	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129