genome.fa.s24.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  106  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17580414--17580451	17	2.2	17	86	9	51	57	0	10	31	1.32
17580581--17580620	19	2.0	19	90	9	62	32	0	0	67	0.91
17580684--17580735	20	2.6	20	82	14	63	23	0	7	69	1.14
17580699--17580856	30	5.5	28	73	11	97	34	1	3	60	1.23
17580691--17580753	29	2.1	29	82	2	54	23	0	6	69	1.11
17580727--17580890	20	8.5	19	71	14	104	37	3	3	56	1.33
17580775--17580847	38	1.9	38	82	0	92	38	2	2	56	1.28
17580725--17580888	9	17.2	9	69	15	80	36	3	3	56	1.32
17580738--17580875	48	2.9	47	76	14	129	38	3	2	55	1.33
17580812--17580910	10	9.8	10	71	14	60	41	3	6	49	1.43
17580933--17580975	18	2.2	20	88	12	63	30	0	9	60	1.28
17581017--17581056	10	4.0	10	83	0	53	37	2	2	57	1.26
17581022--17581063	20	2.1	20	90	0	66	45	2	2	50	1.27
17581592--17581650	28	2.1	29	83	3	75	32	3	0	64	1.10
17581992--17583135	571	2.0	568	88	3	1712	43	6	4	44	1.51
17583407--17583457	23	2.2	23	79	6	59	52	3	1	41	1.31
17588211--17588258	24	2.0	24	100	0	96	41	12	16	29	1.85
17598984--17599020	2	19.0	2	94	5	67	0	51	0	48	1.00
17601195--17601234	21	1.9	21	85	10	55	45	5	0	50	1.23
17601250--17601303	15	3.5	15	78	9	56	72	0	1	25	0.95
17601247--17601327	32	2.6	31	80	9	85	66	2	2	28	1.17
17601430--17601482	18	3.2	17	72	22	58	54	0	1	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17601575--17601603	12	2.3	13	94	5	51	34	0	0	65	0.93
17601636--17601684	25	2.0	25	84	8	64	55	2	2	40	1.23
17612476--17612515	21	1.9	21	89	0	62	10	10	15	65	1.48
17632135--17632195	28	2.2	28	82	5	70	36	1	4	57	1.30
17632217--17632258	21	2.0	21	100	0	84	66	9	0	23	1.21
17635391--17635444	17	3.0	18	86	5	65	74	0	7	18	1.05
17635382--17635432	9	5.8	9	78	17	54	74	0	9	15	1.06
17635403--17635440	13	2.8	13	92	4	58	76	0	5	18	0.97
17635403--17635444	9	4.8	9	80	16	52	76	0	4	19	0.96
17635535--17635568	16	2.1	16	89	10	52	17	5	20	55	1.62
17635610--17635648	16	2.5	15	88	12	60	20	0	12	66	1.24
17636148--17636188	18	2.3	18	87	8	57	7	9	2	80	0.99
17637544--17637573	3	10.0	3	100	0	60	66	0	0	33	0.92
17637613--17637667	24	2.6	19	70	24	56	36	12	3	47	1.59
17638910--17638955	23	2.0	23	83	4	58	10	10	30	47	1.73
17642141--17642181	20	2.0	21	95	4	75	46	0	0	53	1.00
17647155--17647198	23	1.9	24	86	9	65	50	0	2	47	1.13
17647316--17647362	19	2.3	20	79	17	53	46	0	8	44	1.33
17647390--17647435	23	2.0	22	87	4	65	52	2	4	41	1.33
17647394--17647441	23	2.1	23	84	0	60	54	2	4	39	1.32
17650183--17650375	98	2.0	98	95	0	350	45	10	4	39	1.57
17654453--17654493	17	2.5	16	84	7	55	19	17	7	56	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17656168--17656212	14	3.1	15	81	18	60	53	0	0	46	1.00
17664002--17664052	25	2.0	26	84	7	68	62	5	1	29	1.29
17669259--17669363	52	2.0	52	83	0	129	46	5	18	29	1.71
17682026--17682067	19	2.2	20	83	12	52	50	0	2	47	1.14
17682538--17682580	17	2.5	17	82	14	52	20	2	0	76	0.89
17684369--17684410	14	3.1	14	82	3	50	19	2	2	76	1.01
17685064--17685118	9	5.8	9	80	16	58	18	7	0	74	1.04
17685063--17685119	10	5.8	10	73	19	57	17	7	0	75	1.02
17689484--17689524	20	2.0	21	90	4	66	56	0	9	34	1.32
17690075--17690115	12	3.3	12	86	3	55	39	0	0	60	0.96
17690082--17690121	11	3.5	11	89	3	53	35	0	0	65	0.93
17690099--17690151	24	2.1	26	82	10	65	39	1	1	56	1.21
17696554--17696596	21	2.0	21	100	0	86	13	37	27	20	1.91
17696556--17696602	21	2.2	21	92	0	76	14	40	25	19	1.90
17702093--17702122	12	2.4	13	94	5	53	30	26	16	26	1.97
17712148--17712687	104	5.2	103	74	11	378	29	6	12	50	1.66
17712146--17712716	206	2.8	203	78	8	514	28	7	13	50	1.68
17712430--17712616	100	1.9	99	84	8	254	31	8	11	49	1.68
17732958--17733010	24	2.2	24	96	0	97	41	11	3	43	1.58
17733160--17733208	16	2.9	16	80	17	55	75	0	0	24	0.80
17733164--17733202	19	2.1	19	85	9	53	76	0	0	23	0.78
17733418--17733466	18	2.9	18	82	11	59	24	2	8	65	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17735193--17735239	9	5.1	9	86	2	58	27	4	0	68	1.08
17735193--17735246	18	2.8	19	86	8	74	27	3	0	68	1.06
17736504--17736763	104	2.5	104	82	2	299	36	15	11	36	1.83
17737076--17737111	19	2.0	19	89	10	58	0	13	0	86	0.58
17737291--17737386	26	3.7	26	80	0	102	35	13	15	35	1.87
17738110--17738136	14	1.9	14	100	0	54	11	0	0	88	0.50
17744691--17744731	3	14.0	3	89	5	66	31	2	0	65	1.05
17747145--17747707	307	1.8	307	82	3	729	34	18	11	35	1.88
17752855--17752923	30	2.2	31	94	5	122	31	2	8	56	1.45
17753962--17754277	161	2.0	162	83	1	402	39	16	9	34	1.81
17756274--17756307	18	1.9	18	88	5	52	20	58	5	14	1.57
17757741--17757768	2	14.0	2	100	0	56	50	0	50	0	1.00
17760815--17760848	6	5.7	6	90	10	52	50	0	2	47	1.16
17761698--17761792	50	1.9	48	87	4	136	58	3	6	31	1.38
17762229--17762289	23	2.4	25	76	18	63	47	1	1	49	1.21
17762235--17762284	24	2.1	23	85	3	64	50	2	0	48	1.12
17762346--17762409	21	2.7	24	74	20	62	48	4	4	42	1.45
17762490--17762542	22	2.4	22	75	15	56	64	3	5	26	1.33
17762791--17762821	2	15.5	2	100	0	62	51	0	0	48	1.00
17762905--17762936	2	16.0	2	93	0	55	50	3	0	46	1.17
17768513--17768552	21	1.9	21	89	0	62	37	7	5	50	1.53
17768708--17768735	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17769857--17770105	128	2.0	124	88	7	367	38	8	7	46	1.62
17770141--17770191	16	3.1	16	81	16	59	39	1	1	56	1.22
17772186--17772242	29	2.0	29	92	0	96	28	19	17	35	1.94
17775013--17775042	6	5.2	6	92	8	53	33	0	0	66	0.92
17777018--17777057	20	2.0	20	100	0	80	35	0	20	45	1.51
17777589--17777640	12	4.3	12	73	9	52	42	0	0	57	0.98
17778303--17778343	17	2.5	17	88	4	57	2	4	2	90	0.61
17778309--17778351	12	3.5	12	87	6	59	4	2	4	88	0.70
17778312--17778351	11	3.5	11	86	6	53	5	2	5	87	0.73
17778419--17778457	11	3.5	11	82	3	51	7	7	0	84	0.77
17778592--17778618	14	1.9	14	100	0	54	3	14	0	81	0.82
17779364--17779390	7	3.9	7	100	0	54	0	11	0	88	0.50
17779474--17779517	15	3.0	14	83	6	52	9	11	4	75	1.19
17780539--17780582	10	4.5	10	81	16	56	29	0	2	68	1.02
17780601--17780655	22	2.4	24	82	11	71	56	3	0	40	1.17
17780847--17780885	12	3.2	12	82	7	51	35	0	0	64	0.94
17782590--17782641	22	2.4	22	86	0	68	75	1	11	11	1.14
17783360--17783393	15	2.4	14	90	9	52	73	0	0	26	0.83
17783363--17783426	24	2.7	23	81	9	67	70	1	0	28	0.97
17788080--17788123	22	2.0	22	100	0	88	27	18	18	36	1.94
17792459--17792508	22	2.3	21	82	3	64	50	6	16	28	1.68
17792840--17792894	22	2.5	21	82	11	58	32	16	12	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17792880--17793153	104	2.6	103	79	4	284	35	12	12	39	1.81
17792880--17793208	104	3.2	102	75	5	275	35	13	13	37	1.83
17795256--17795770	258	2.0	259	89	1	784	36	16	9	37	1.81
17796152--17796192	17	2.5	17	92	4	66	34	9	17	39	1.82
17796427--17796513	26	3.3	27	78	15	94	18	11	1	68	1.25
17796390--17796501	11	10.2	11	74	16	81	17	10	2	68	1.30
17796427--17796513	15	5.5	15	75	16	63	18	11	1	68	1.25
17796485--17796513	14	2.0	15	93	6	51	20	10	0	68	1.18
17796427--17796500	6	12.7	6	73	21	52	17	12	1	68	1.26
17797089--17797124	5	7.6	5	93	6	58	19	0	0	80	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129