genome.fa.s24.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  99  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16423150--16423207	16	3.9	14	80	17	55	81	0	6	12	0.88
16423357--16423406	1	50.0	1	79	0	55	2	0	8	90	0.54
16423357--16423406	9	5.2	9	81	13	64	2	0	8	90	0.54
16423357--16423406	10	5.1	10	88	11	77	2	0	8	90	0.54
16423414--16423767	42	8.5	42	92	2	518	35	23	18	22	1.95
16423414--16423767	41	8.5	41	90	3	501	35	23	18	22	1.95
16423414--16423795	83	4.6	83	89	3	545	36	23	17	23	1.95
16425452--16425536	20	4.4	18	75	19	64	4	16	0	78	0.91
16425469--16425515	19	2.4	19	89	7	67	0	14	0	85	0.61
16425450--16425514	8	8.1	8	72	13	53	3	16	0	80	0.85
16425469--16425515	9	4.9	9	82	14	58	0	14	0	85	0.61
16425469--16425537	20	3.4	20	84	6	68	2	15	0	81	0.81
16429803--16430332	59	9.0	58	85	7	656	35	13	6	44	1.70
16429922--16430015	27	3.3	27	65	21	66	37	13	6	42	1.70
16430099--16430190	28	3.1	28	63	11	67	36	14	4	44	1.65
16430350--16430421	5	13.8	5	74	21	60	77	1	6	13	1.03
16430346--16430414	33	2.1	31	84	12	86	78	1	5	14	1.01
16430346--16430414	11	6.4	10	74	15	50	78	1	5	14	1.01
16430347--16430421	17	4.8	16	81	12	77	78	1	6	13	1.00
16430363--16430414	11	4.7	11	79	15	54	76	1	7	13	1.07
16431760--16431792	12	2.8	12	86	13	50	51	3	0	45	1.16
16432791--16432832	19	2.3	19	83	4	59	54	4	4	35	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16433017--16433041	7	3.6	7	100	0	50	24	0	0	76	0.80
16433107--16433166	16	3.6	17	76	14	72	33	3	0	63	1.11
16433110--16433174	17	4.2	16	76	21	68	33	3	0	63	1.10
16433131--16433174	13	3.2	13	79	20	54	34	2	0	63	1.07
16433131--16433189	28	2.1	29	90	3	93	33	1	1	62	1.15
16433222--16433338	19	6.2	19	71	13	73	43	1	1	52	1.21
16433192--16433299	55	2.0	56	85	7	150	45	1	0	51	1.18
16433880--16433968	38	2.4	35	81	10	90	7	10	6	75	1.19
16434953--16434999	23	2.0	24	87	4	69	8	6	6	78	1.08
16436469--16436514	9	5.2	9	75	15	51	56	0	0	43	0.99
16436488--16436568	16	4.9	16	69	21	60	50	1	0	48	1.08
16436458--16436576	19	6.6	18	71	22	65	54	0	0	44	1.05
16436463--16436567	35	3.0	34	80	15	101	52	0	0	46	1.07
16436500--16436590	16	5.7	15	71	20	60	54	2	0	42	1.12
16436617--16436741	11	11.2	11	71	20	82	43	0	1	54	1.15
16436608--16436762	76	2.1	74	82	14	182	42	0	1	55	1.12
16436621--16436704	18	4.3	19	71	25	61	42	1	1	54	1.15
16436618--16436750	26	5.2	26	74	16	102	43	0	1	54	1.15
16436690--16436762	37	2.1	33	82	10	83	43	0	1	54	1.08
16436608--16436750	13	11.2	13	69	20	81	41	0	1	55	1.13
16436875--16436925	22	2.3	22	86	0	66	31	13	3	50	1.60
16440613--16440659	25	1.9	24	82	4	58	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16440642--16440667	13	2.0	13	100	0	52	76	0	0	23	0.78
16440736--16440781	12	3.6	13	86	11	60	50	0	0	50	1.00
16440738--16440777	20	1.9	21	90	10	64	47	0	0	52	1.00
16441956--16441996	20	2.2	20	82	8	50	29	4	2	63	1.28
16442165--16442210	20	2.3	20	78	17	51	28	4	0	67	1.10
16442525--16442562	19	2.0	20	89	5	60	71	0	2	26	1.00
16442609--16442656	18	2.6	17	81	12	60	27	4	22	45	1.70
16448477--16448565	26	3.4	26	71	19	78	16	4	6	71	1.24
16450197--16450239	22	1.9	23	85	4	61	16	4	23	55	1.59
16453461--16453487	14	1.9	14	100	0	54	7	0	11	81	0.87
16453706--16453755	22	2.3	22	89	0	73	28	16	26	30	1.96
16454219--16454287	23	3.0	23	84	0	93	36	17	17	28	1.93
16454634--16454673	11	3.6	11	86	6	55	7	12	0	80	0.91
16455066--16455210	70	2.0	71	81	4	166	33	11	20	33	1.89
16456158--16456773	148	4.4	141	74	10	528	21	17	9	51	1.73
16465649--16465688	19	2.0	22	85	14	59	17	2	35	45	1.62
16470180--16470234	22	2.5	22	87	3	74	43	7	9	40	1.64
16470192--16470240	23	2.2	22	81	3	53	36	10	12	40	1.77
16470633--16470696	22	2.9	22	95	0	110	39	6	6	48	1.54
16472875--16472899	2	12.5	2	100	0	50	48	0	0	52	1.00
16480203--16480403	55	3.7	55	78	11	200	46	5	8	38	1.58
16487201--16487243	16	2.6	16	82	10	52	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16487281--16487369	47	2.0	44	86	6	124	46	2	0	51	1.13
16487343--16487398	26	2.1	27	86	6	78	48	0	1	50	1.11
16487372--16487411	21	1.9	21	89	0	62	45	0	2	52	1.14
16487366--16487417	21	2.5	20	81	9	59	44	0	1	53	1.11
16488210--16488239	14	2.1	14	100	0	60	43	0	0	56	0.99
16488935--16488984	12	3.9	13	76	12	50	42	4	0	54	1.19
16498161--16498191	10	3.1	10	100	0	62	38	0	9	51	1.35
16498165--16498223	27	2.1	28	81	9	68	44	5	8	42	1.57
16501776--16501806	2	15.5	2	100	0	62	48	0	0	51	1.00
16504921--16504956	11	3.4	11	88	7	56	72	0	0	27	0.85
16505271--16505335	29	2.2	29	100	0	130	15	6	3	75	1.12
16505282--16505344	29	2.2	29	91	0	99	17	6	7	68	1.36
16506120--16506149	2	15.0	2	100	0	60	50	0	0	50	1.00
16509845--16509981	42	3.3	42	81	2	159	21	8	16	54	1.68
16509942--16510015	36	2.1	36	92	0	121	22	10	21	44	1.83
16510707--16510763	18	3.4	18	69	18	50	57	7	5	29	1.47
16510708--16510771	32	2.0	32	87	0	92	56	6	6	31	1.49
16511283--16511389	42	2.5	43	83	3	128	42	3	30	23	1.72
16515443--16515500	22	2.6	23	83	2	64	67	10	3	18	1.35
16515463--16515500	12	3.2	12	81	7	51	68	13	2	15	1.32
16515438--16515500	23	2.8	22	80	4	63	66	11	4	17	1.39
16516379--16516408	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16519331--16519389	26	2.2	28	82	11	70	45	1	6	45	1.40
16519857--16519890	17	2.0	17	88	0	50	70	0	0	29	0.87
16520669--16520734	22	3.3	22	66	24	63	34	7	7	50	1.59
16520669--16520744	38	2.0	38	97	0	143	38	7	7	46	1.62
16521711--16521737	2	13.5	2	100	0	54	48	0	0	51	1.00
16525111--16525179	30	2.3	30	87	5	95	44	7	2	44	1.46
16525207--16525273	29	2.5	27	75	15	68	61	2	1	34	1.20
16526832--16526905	26	2.9	26	73	16	66	47	1	1	50	1.18
16527871--16528139	126	2.1	128	82	4	312	42	10	14	33	1.80
16527905--16528167	126	2.1	127	79	4	289	40	12	13	33	1.82
16528250--16528326	35	2.2	35	88	0	109	35	7	20	36	1.82
16531519--16531593	28	2.7	28	82	0	105	49	24	2	24	1.63
16533234--16533832	318	1.9	321	85	3	841	37	11	13	38	1.80
16536390--16536425	12	3.0	12	100	0	72	50	8	33	8	1.63
16542567--16542592	13	2.0	13	100	0	52	15	0	0	84	0.62
16542876--16542930	16	3.4	16	73	7	58	45	0	0	54	0.99
16543077--16543158	14	5.9	14	76	8	78	50	26	1	21	1.57
16543106--16543180	15	5.1	15	79	4	82	52	26	0	21	1.47
16543106--16543176	29	2.4	29	88	2	97	50	26	0	22	1.49
16543113--16543177	7	8.8	8	71	20	52	50	26	0	23	1.49
16543120--16543209	29	3.1	28	81	10	92	51	27	2	18	1.58
16543183--16543232	22	2.3	22	82	6	57	52	22	4	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16543216--16543356	14	9.8	14	66	16	65	48	30	1	19	1.57
16543332--16543385	22	2.6	21	82	11	67	53	33	0	12	1.39
16543330--16543385	21	2.7	20	82	15	69	51	35	0	12	1.40
16549936--16549974	1	39.0	1	84	0	51	92	0	2	5	0.46
16549935--16549974	20	2.0	20	90	9	64	90	0	2	7	0.55
16549935--16549973	19	2.0	19	90	5	60	89	0	2	7	0.56
16549938--16549972	18	1.9	18	94	0	61	91	0	2	5	0.50
16551829--16552109	128	2.2	128	83	5	309	34	14	14	36	1.87
16552145--16552377	110	2.1	110	84	3	299	24	15	16	43	1.87
16552458--16552517	22	2.7	22	97	0	111	31	18	15	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129