genome.fa.s24.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  5  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
919568--919934	156	2.3	158	87	3	508	19	29	30	20	1.97
920770--920822	26	2.0	26	88	0	79	30	24	16	28	1.97
919888--922452	908	2.9	895	88	2	3783	26	25	23	25	2.00
922789--922841	26	2.0	26	92	0	88	26	22	20	30	1.98
925433--925485	26	2.0	26	92	0	88	30	24	18	26	1.98
925891--925948	26	2.3	25	80	11	66	51	20	6	20	1.70
925892--925946	27	2.2	24	83	9	65	54	18	7	20	1.66
923687--930243	894	7.4	894	84	5	8083	25	24	24	25	2.00
927182--927234	26	2.0	26	100	0	106	26	26	20	26	1.99
927315--927347	11	3.0	11	90	0	57	21	36	33	9	1.85
928959--929011	26	2.0	26	100	0	106	26	26	20	26	1.99
929862--929914	26	2.0	26	100	0	106	26	26	20	26	1.99
930439--930488	26	1.9	26	100	0	100	24	28	20	28	1.99
931335--931386	26	2.0	26	96	0	95	26	28	19	25	1.98
932230--932282	26	2.0	26	96	0	97	28	26	20	24	1.99
932646--932727	26	3.2	26	92	0	128	30	23	14	31	1.94
933564--933614	26	2.0	26	92	0	84	27	23	19	29	1.98
934460--934510	26	2.0	26	96	0	93	27	25	19	27	1.99
932675--937745	899	5.7	897	86	5	6460	26	24	24	25	2.00
935360--935410	26	2.0	26	96	0	93	27	25	19	27	1.99
935844--937745	870	2.2	864	83	5	2395	26	24	23	24	2.00
939860--939912	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940284--940335	25	2.0	26	92	3	88	28	28	17	25	1.97
942086--942138	26	2.0	26	100	0	106	26	26	20	26	1.99
940093--951940	900	13.2	902	84	5	14257	25	25	24	25	2.00
946489--946540	26	2.0	25	92	3	86	25	25	23	26	2.00
946720--946749	11	2.6	12	94	5	53	10	30	20	40	1.85
947397--947449	26	2.0	26	96	0	97	26	24	20	28	1.99
945623--951940	902	7.0	901	85	4	7980	25	25	24	25	2.00
948309--948363	26	2.0	28	89	6	87	29	29	18	23	1.98
949217--949269	26	2.0	26	96	0	97	26	24	20	28	1.99
950122--950172	26	2.0	26	88	7	77	31	27	13	27	1.94
951022--951074	26	2.0	26	92	0	88	24	24	24	26	2.00
954837--954889	26	2.0	26	92	0	88	30	22	18	28	1.98
956693--956965	59	4.7	58	74	20	232	34	13	7	45	1.71
957004--957058	15	3.6	15	82	4	65	76	3	7	12	1.12
957108--957148	16	2.6	16	88	7	57	82	2	0	14	0.76
958023--958098	18	4.2	19	73	11	70	73	1	0	25	0.91
958023--958127	7	13.9	8	66	23	50	70	0	0	28	0.94
958023--958127	4	27.8	4	69	22	50	70	0	0	28	0.94
958027--958175	27	5.4	26	69	14	86	70	2	1	26	1.06
958140--958174	11	3.1	12	88	12	56	80	0	0	20	0.72
958142--958176	6	5.8	6	90	10	54	80	0	0	20	0.72
958047--958176	12	11.4	11	68	16	61	70	2	1	25	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958440--958472	15	2.2	15	100	0	66	0	6	6	87	0.65
958361--958574	120	1.8	118	84	7	299	28	14	13	43	1.83
958448--958665	102	2.1	101	86	7	316	27	14	13	44	1.83
958752--958851	45	2.2	45	81	11	125	32	29	16	23	1.95
959422--959480	22	2.7	22	84	7	75	33	18	8	38	1.81
960553--960597	8	5.5	8	81	5	54	8	17	0	73	1.08
960553--960646	23	4.0	23	74	19	79	8	18	0	73	1.08
960551--960599	17	3.0	17	82	8	66	8	18	0	73	1.07
960577--960610	9	3.7	9	84	7	50	2	11	0	85	0.71
964524--964922	117	3.4	117	85	10	556	34	12	8	44	1.72
964524--964925	59	6.7	59	84	7	526	34	12	8	45	1.72
964733--964856	66	1.9	66	91	3	205	33	12	7	46	1.70
964676--964915	125	1.9	125	90	3	385	34	13	7	44	1.73
964949--965026	17	4.6	16	76	7	66	76	1	7	14	1.05
964967--965025	27	2.1	28	87	9	86	76	1	8	13	1.09
965049--965104	4	13.8	4	76	10	51	76	5	0	17	0.96
965060--965104	12	3.7	12	93	3	72	77	6	0	15	0.96
965959--966069	26	4.2	27	75	11	88	70	0	1	27	1.03
965978--966078	4	25.8	4	71	15	59	71	0	0	27	0.93
965978--966080	51	1.9	56	86	11	153	70	1	0	27	0.97
965957--966071	24	4.6	24	72	16	81	69	0	1	27	1.04
966091--966125	11	3.1	12	88	12	56	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966093--966127	6	5.8	6	90	10	54	80	0	0	20	0.72
966461--966513	26	2.0	26	100	0	106	26	26	20	26	1.99
968890--968940	26	2.0	26	100	0	102	27	25	19	27	1.99
967524--978778	867	12.5	874	74	13	7728	25	24	24	25	2.00
967524--973390	869	6.6	874	82	7	6361	25	24	24	25	2.00
970663--970717	26	2.0	27	93	6	94	27	27	20	25	1.99
971360--971385	4	6.5	4	100	0	52	0	73	26	0	0.84
971570--971645	26	2.9	26	88	0	107	25	27	21	26	1.99
973205--973572	183	2.0	183	82	3	445	20	28	28	22	1.99
975294--975346	26	2.0	26	92	0	88	28	26	16	28	1.97
975672--975834	85	1.9	85	88	5	249	30	18	15	35	1.92
976272--976324	26	2.0	26	96	0	97	32	26	15	26	1.95
980537--980589	26	2.0	26	92	0	88	30	24	18	26	1.98
984345--984397	26	2.0	26	88	0	79	28	22	20	28	1.99
983675--986012	868	2.6	878	85	3	2982	27	24	21	25	1.99
985240--986727	715	2.1	718	86	1	2092	27	23	22	25	2.00
987730--987782	26	2.0	26	96	0	97	28	26	18	26	1.98
988632--988682	26	2.0	26	96	0	93	25	21	21	31	1.98
985952--989423	901	3.9	892	85	4	4388	26	24	23	25	2.00
990050--990074	12	2.1	12	100	0	50	0	64	28	8	1.22
990277--994672	716	6.0	702	73	14	3317	27	23	23	26	2.00
995632--995683	26	2.0	26	85	7	70	26	23	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996546--996598	26	2.0	26	92	0	88	28	24	20	26	1.99
994877--996789	914	2.1	910	85	4	2570	25	24	24	25	2.00
997692--997744	26	2.0	26	96	0	97	28	26	18	26	1.98
998434--998483	25	2.0	26	92	4	84	28	26	18	28	1.98
998765--998817	26	2.0	26	96	0	97	28	26	18	26	1.98
998344--999009	332	2.0	330	88	2	987	16	27	30	24	1.96
999419--999497	26	3.0	26	92	0	140	27	25	18	27	1.98
1001205--1001308	26	4.0	26	92	2	183	26	25	19	27	1.99
1001205--1001308	51	2.0	52	94	1	183	26	25	19	27	1.99
1002166--1002218	26	2.0	26	100	0	106	26	26	20	26	1.99
1003955--1004007	26	2.0	26	96	0	97	28	26	18	26	1.98
1003248--1005532	874	2.7	870	81	11	2463	26	23	22	26	2.00
1008136--1008187	26	2.0	26	100	0	104	30	23	19	26	1.98
1009030--1009081	26	2.0	26	100	0	104	26	26	19	26	1.99
1009917--1009969	26	2.0	26	88	0	79	26	24	18	30	1.98
1005477--1013386	906	8.8	904	83	5	9510	25	24	24	25	2.00
1010827--1010879	26	2.0	26	92	0	88	28	22	20	28	1.99
1012596--1012646	26	2.0	26	92	0	84	29	21	19	29	1.98
1015036--1015088	26	2.0	26	96	0	97	28	26	18	26	1.98
1013393--1025780	891	13.7	887	71	13	6174	26	24	23	25	2.00
1015920--1015972	26	2.0	26	92	0	88	28	24	18	28	1.98
1017661--1021295	718	5.1	717	88	4	5300	26	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1021399--1021450	26	2.0	26	96	3	97	26	25	21	26	1.99
1022298--1022350	26	2.0	26	88	0	79	30	22	18	28	1.98
1023194--1023246	26	2.0	26	96	0	97	26	24	20	28	1.99
1020534--1025772	891	5.9	897	85	4	6932	25	24	23	25	2.00
1024978--1025030	26	2.0	26	96	0	97	28	26	18	26	1.98
1025701--1029136	901	3.9	874	87	2	4671	25	24	23	25	2.00
1028351--1028403	26	2.0	26	96	0	97	28	26	18	26	1.98
1031244--1031293	25	2.0	26	92	4	84	28	22	22	28	1.99
1033045--1033094	26	1.9	26	87	0	73	28	26	18	28	1.98
1033938--1033990	26	2.0	26	96	0	97	26	26	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129