genome.fa.s24.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  91  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14731364--14731443	20	4.2	20	73	12	53	51	2	1	45	1.22
14731364--14731426	17	3.6	16	78	18	54	50	1	1	46	1.20
14731415--14731565	18	9.6	18	68	27	71	56	3	0	40	1.16
14731427--14731494	13	5.2	13	78	16	54	57	4	0	38	1.19
14731415--14731618	31	6.5	30	73	18	157	55	3	0	40	1.16
14731475--14731619	26	5.7	25	71	23	108	55	2	0	41	1.14
14731350--14731619	91	2.9	89	77	14	224	54	2	0	41	1.18
14731478--14731616	67	2.1	68	79	14	155	56	2	0	41	1.14
14731342--14731568	15	14.6	17	66	24	69	54	2	0	42	1.17
14731721--14731779	26	2.3	26	91	2	93	49	1	0	49	1.11
14735110--14735156	25	1.9	25	82	4	60	42	2	0	55	1.12
14736588--14736631	19	2.2	20	88	8	72	47	20	6	25	1.74
14736441--14736682	82	2.9	82	87	0	340	32	21	15	30	1.94
14737767--14737792	11	2.4	11	100	0	52	73	0	7	19	1.07
14738139--14738181	15	2.9	15	96	0	77	11	27	23	37	1.89
14739443--14739480	16	2.3	17	90	4	60	71	0	0	28	0.87
14743008--14743043	18	2.1	18	89	5	56	38	0	0	61	0.96
14744633--14744773	76	1.9	76	95	0	255	21	25	18	34	1.96
14744624--14745253	240	2.6	240	92	1	1039	22	24	18	34	1.96
14745113--14745329	76	2.9	76	90	1	328	22	26	17	33	1.96
14746854--14747191	58	5.7	57	83	7	401	33	12	6	47	1.66
14746859--14747209	119	2.9	117	84	8	433	33	11	5	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14747213--14747316	26	3.8	26	72	21	79	76	0	5	16	1.02
14747217--14747306	6	14.8	6	72	19	53	78	1	5	14	0.98
14747214--14747306	31	3.0	30	80	10	100	79	1	5	13	0.96
14747214--14747305	11	8.8	11	76	15	65	79	1	5	14	0.96
14747258--14747384	27	5.1	26	68	17	74	75	4	2	17	1.08
14748303--14748416	3	36.3	3	71	20	67	61	4	0	34	1.16
14748304--14748416	14	8.1	14	69	23	78	61	4	0	34	1.16
14750779--14750819	20	2.0	21	85	4	57	60	0	0	39	0.96
14752026--14752069	19	2.3	20	85	11	58	31	0	2	65	1.05
14752315--14752351	14	2.4	16	86	8	51	18	8	2	70	1.25
14752974--14753000	2	13.5	2	100	0	54	51	0	0	48	1.00
14754101--14754158	29	2.0	29	96	0	107	46	6	12	34	1.68
14757507--14757534	10	2.8	10	100	0	56	0	21	7	71	1.09
14757505--14757550	15	2.9	16	84	9	51	0	17	10	71	1.13
14758097--14758131	16	2.2	16	90	10	54	82	0	5	11	0.82
14758097--14758131	17	2.1	16	89	5	52	82	0	5	11	0.82
14760189--14760244	18	3.2	18	72	20	55	50	3	0	46	1.19
14760876--14760914	6	6.5	6	100	0	78	0	15	30	53	1.42
14761715--14761820	21	4.8	20	73	20	79	50	0	0	48	1.13
14761716--14761798	42	1.9	43	86	13	118	49	1	0	49	1.08
14761716--14761787	19	3.5	20	79	11	65	51	1	0	47	1.09
14761716--14761820	47	2.4	43	83	13	117	49	0	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14761729--14761821	21	4.3	20	75	20	89	49	1	1	48	1.15
14767952--14768004	21	2.6	20	72	3	52	50	0	11	37	1.38
14769962--14769998	14	2.4	16	82	8	51	37	5	2	54	1.38
14773834--14773871	16	2.3	17	81	9	51	57	2	0	39	1.12
14775298--14775344	22	2.1	22	88	0	67	14	0	6	78	0.93
14775303--14775353	23	2.2	23	85	0	75	15	0	7	76	1.00
14779832--14779927	15	6.7	15	75	15	96	39	2	7	51	1.42
14779832--14779927	43	2.3	42	92	1	156	39	2	7	51	1.42
14779876--14779933	28	2.1	28	81	12	66	39	3	6	50	1.46
14780291--14780326	3	12.0	3	100	0	72	33	0	0	66	0.92
14780817--14780867	26	2.0	26	84	0	66	41	7	1	49	1.43
14780823--14780876	26	2.1	26	85	0	72	37	5	3	53	1.42
14781346--14781389	23	2.0	23	86	4	63	45	2	4	47	1.35
14781467--14781514	24	2.0	25	84	12	64	47	4	2	45	1.33
14782157--14782206	26	2.0	26	84	4	66	40	2	4	54	1.31
14785613--14785651	2	19.5	2	100	0	78	0	48	0	51	1.00
14793425--14793455	2	15.5	2	100	0	62	48	0	0	51	1.00
14797708--14797762	24	2.3	25	85	14	80	52	3	0	43	1.18
14797706--14797759	16	3.4	15	77	7	54	51	3	0	44	1.19
14801749--14801786	20	1.9	20	88	0	58	47	0	0	52	1.00
14802064--14802089	2	13.0	2	100	0	52	50	0	0	50	1.00
14803063--14803111	25	2.1	24	85	11	66	40	4	6	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14803142--14803171	10	3.1	10	95	4	53	63	0	0	36	0.95
14811668--14811794	67	1.9	65	95	3	227	51	3	7	38	1.45
14813491--14813523	2	16.5	2	100	0	66	51	0	0	48	1.00
14820134--14820238	33	3.0	32	79	10	102	50	2	0	46	1.16
14820242--14820299	22	2.9	19	79	16	64	39	1	0	58	1.08
14820284--14820332	23	2.1	23	84	0	62	26	0	2	71	0.97
14830132--14830198	31	2.1	33	84	13	88	46	0	5	47	1.27
14830656--14830688	15	2.1	16	94	5	59	51	0	0	48	1.00
14832776--14832809	17	1.9	18	94	5	61	26	5	0	67	1.13
14833654--14833714	23	2.6	24	76	10	72	47	0	3	49	1.18
14854729--14854804	38	2.0	39	84	7	102	46	0	1	52	1.08
14855322--14855355	17	1.9	17	88	5	50	52	0	2	44	1.16
14855956--14856021	15	4.7	14	69	25	50	33	3	1	62	1.20
14855930--14856026	41	2.4	41	98	0	185	36	2	2	59	1.21
14859951--14859979	6	4.8	6	100	0	58	34	48	17	0	1.47
14864199--14864253	25	2.2	25	90	0	83	20	25	23	30	1.98
14867814--14867924	57	2.0	56	90	1	177	49	9	16	24	1.75
14868314--14868338	8	3.1	8	100	0	50	24	12	12	52	1.72
14869179--14869232	27	2.0	27	96	0	99	33	9	11	46	1.71
14872033--14872068	17	2.1	18	94	5	65	52	0	8	38	1.32
14873011--14873035	2	12.5	2	100	0	50	48	0	0	52	1.00
14873037--14873061	2	12.5	2	100	0	50	0	0	48	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14875330--14875358	11	2.5	12	88	11	51	37	0	0	62	0.96
14884301--14884327	7	3.9	7	100	0	54	74	0	0	25	0.83
14884932--14885239	82	3.7	82	80	6	325	33	11	12	42	1.79
14885363--14885407	17	2.8	17	75	18	51	48	0	6	44	1.29
14885487--14885555	29	2.3	31	87	7	106	40	0	2	56	1.14
14890959--14891021	28	2.2	28	86	5	83	47	1	0	50	1.10
14894211--14894269	16	3.7	16	74	19	52	47	0	0	52	1.00
14894210--14894269	17	3.8	17	73	10	56	48	0	0	51	1.00
14894207--14894285	19	4.0	21	69	21	64	45	0	0	54	0.99
14894231--14894309	41	2.0	40	87	9	117	43	0	0	56	0.99
14894252--14894309	22	2.8	22	73	26	63	43	0	0	56	0.99
14894275--14894370	41	2.3	41	77	10	99	53	0	0	46	1.00
14899093--14899152	22	2.8	22	70	25	56	48	0	0	51	1.00
14899571--14899613	12	3.5	12	80	3	50	60	2	0	37	1.10
14899567--14899629	19	3.2	20	71	6	58	58	1	0	39	1.07
14899651--14899700	25	2.0	26	88	11	77	52	2	2	44	1.24
14906385--14906472	40	2.3	37	79	12	97	45	0	3	51	1.18
14912500--14912554	26	2.2	24	81	12	58	54	1	0	43	1.10
14913883--14913982	34	3.0	34	82	5	123	45	6	7	42	1.56
14915617--14915655	19	2.0	20	85	5	53	30	0	0	69	0.89
14918033--14918075	10	4.0	11	82	11	54	39	0	0	60	0.97
14918010--14918076	22	3.0	22	78	10	73	37	1	0	61	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14918020--14918076	12	5.0	12	73	18	50	38	1	0	59	1.08
14918043--14918100	19	3.0	19	80	7	55	43	0	0	56	0.99
14918091--14918156	23	3.1	22	72	24	77	59	6	4	30	1.42
14918094--14918166	19	3.6	19	75	20	76	58	5	4	31	1.39
14919507--14919639	65	2.0	65	97	0	248	38	7	16	37	1.77
14923254--14923294	21	1.9	22	90	5	66	48	31	0	19	1.49
14923257--14923379	59	2.1	57	86	4	174	47	31	2	18	1.62
14923305--14923388	14	5.9	14	75	2	69	48	35	1	14	1.51
14923275--14923386	28	3.9	28	80	4	107	47	33	2	16	1.61
14925208--14925364	52	3.0	52	83	1	199	42	8	23	25	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129