genome.fa.s24.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  65  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9982156--9982194	16	2.5	17	84	16	57	79	0	0	20	0.73
9982117--9982198	36	2.3	35	83	4	103	75	1	1	21	0.94
9982118--9982210	7	14.8	6	74	17	66	75	1	3	20	1.01
9982999--9983060	5	12.4	5	75	17	58	56	1	1	40	1.19
9982999--9983190	16	12.8	16	68	17	74	55	6	2	35	1.38
9982991--9983063	18	4.1	19	77	13	75	57	1	1	39	1.16
9983154--9983188	13	2.8	13	87	12	56	71	5	0	22	1.07
9984414--9984451	20	1.9	20	94	0	67	44	7	2	44	1.47
9990286--9990315	2	15.5	2	93	6	53	50	0	0	50	1.00
9994916--9994959	22	2.0	22	95	0	79	34	9	4	52	1.54
9995083--9995138	1	56.0	1	83	0	67	91	1	5	1	0.56
9998090--9998123	17	1.9	18	94	5	61	23	8	0	67	1.18
10003000--10003050	18	2.8	20	74	17	56	52	1	0	45	1.12
10003111--10003173	27	2.4	26	84	7	74	36	3	0	60	1.13
10003487--10003526	18	2.3	18	87	8	57	62	0	0	37	0.95
10003480--10003529	17	3.1	15	81	13	55	54	0	0	46	1.00
10003485--10003533	16	3.1	15	78	16	53	59	0	0	40	0.98
10003590--10003631	22	1.9	22	90	0	66	52	0	0	47	1.00
10015600--10015706	56	1.9	55	86	1	151	42	10	10	37	1.73
10015654--10015846	62	3.1	63	76	11	193	37	6	9	46	1.62
10018683--10018721	20	2.0	20	89	0	60	28	12	2	56	1.50
10018880--10018921	17	2.3	18	84	8	50	16	2	7	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10020176--10020213	15	2.6	15	88	12	53	10	21	0	68	1.19
10021406--10021458	29	1.9	29	85	11	76	47	9	11	32	1.71
10023894--10023932	16	2.7	15	88	11	55	74	0	7	17	1.05
10023894--10023981	24	3.7	23	75	15	74	72	0	6	20	1.07
10024196--10024242	25	1.9	24	82	4	58	23	4	8	63	1.40
10024201--10024262	19	3.2	19	77	15	56	24	1	9	64	1.33
10024232--10024274	21	2.0	21	82	8	52	32	2	9	55	1.44
10024381--10024430	9	5.6	9	85	0	55	34	18	0	48	1.48
10024390--10024456	6	11.2	6	95	0	71	32	11	0	55	1.37
10024417--10024456	3	13.3	3	94	0	71	32	2	0	65	1.06
10024446--10024498	16	3.2	16	78	7	54	16	5	1	75	1.08
10029373--10029402	10	3.0	10	95	0	51	43	0	0	56	0.99
10037795--10037835	11	3.4	12	83	16	50	26	9	0	63	1.25
10040085--10042897	494	5.7	494	96	0	5132	32	15	12	39	1.85
10047100--10047129	11	2.6	11	94	5	51	76	0	23	0	0.78
10051923--10051973	16	3.1	16	81	15	59	84	0	7	7	0.78
10051927--10051973	8	5.6	8	81	18	51	85	0	8	6	0.75
10053093--10053148	21	2.7	21	78	10	60	35	3	12	48	1.58
10053474--10053534	31	2.0	31	87	6	88	39	8	16	36	1.78
10053664--10053994	43	7.6	43	77	4	317	25	13	18	42	1.87
10053676--10053956	87	3.3	86	82	4	341	25	14	18	41	1.88
10053664--10053947	130	2.2	130	83	2	347	25	14	17	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10053664--10053994	130	2.5	127	75	9	317	25	13	18	42	1.87
10053664--10053994	87	3.8	86	78	8	314	25	13	18	42	1.87
10054727--10054794	31	2.2	31	89	0	100	20	4	19	55	1.59
10059776--10059889	11	10.3	10	72	19	84	78	0	16	4	0.90
10059783--10059896	14	8.0	14	71	14	65	77	0	16	6	0.97
10059775--10059865	23	4.0	23	76	18	84	79	0	18	2	0.84
10059797--10059861	16	4.2	15	80	11	69	78	0	20	1	0.83
10059841--10059910	21	3.4	21	84	5	81	72	0	20	7	1.07
10059775--10059868	7	13.0	7	73	18	61	79	0	18	2	0.82
10061173--10061215	21	2.0	21	86	0	59	34	13	18	32	1.90
10061483--10061737	43	5.9	43	83	0	312	27	10	17	44	1.82
10061483--10061771	86	3.3	86	83	3	285	27	11	16	44	1.82
10063846--10064117	67	4.2	64	75	9	201	38	7	5	48	1.55
10064452--10064513	10	6.4	10	78	12	58	77	0	4	17	0.94
10066477--10066693	111	1.9	112	88	6	330	27	12	19	40	1.88
10074856--10074941	45	1.9	45	90	0	136	34	13	20	30	1.92
10076320--10076373	19	2.8	19	85	0	81	50	22	11	16	1.77
10076433--10076469	2	18.5	2	100	0	74	51	0	0	48	1.00
10077723--10077764	21	2.0	22	85	4	59	50	2	2	45	1.27
10078017--10078058	21	2.0	21	81	9	50	45	0	2	52	1.13
10078099--10078151	16	3.3	17	67	22	51	47	0	0	52	1.00
10078106--10078159	17	3.4	17	68	21	53	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10078570--10078612	20	2.1	20	86	4	59	34	6	4	53	1.49
10082012--10082100	41	2.2	41	85	2	117	32	25	19	22	1.97
10082075--10082149	39	1.9	39	88	0	114	33	18	17	30	1.94
10086071--10086139	28	2.5	27	81	4	75	79	7	1	11	0.98
10086100--10086136	16	2.3	16	90	0	56	83	10	0	5	0.79
10086094--10086150	22	2.5	23	85	5	71	82	8	3	5	0.93
10087164--10087201	11	3.5	11	92	0	58	13	10	0	76	1.02
10087357--10087405	21	2.4	20	86	3	62	63	4	6	26	1.36
10087676--10087717	21	2.0	21	86	9	59	59	19	0	21	1.38
10087677--10087765	29	3.1	27	85	9	115	61	20	0	17	1.34
10087763--10088004	29	8.4	29	84	5	285	47	35	0	17	1.51
10087763--10087814	13	3.8	13	76	14	50	51	32	0	15	1.43
10087763--10088043	87	3.2	88	83	5	347	45	35	1	17	1.56
10087763--10088033	29	9.3	30	83	6	267	46	34	0	18	1.55
10094168--10094199	16	1.9	16	93	6	55	81	0	9	9	0.88
10096033--10096114	41	2.0	41	83	4	103	35	19	13	31	1.90
10096315--10096357	22	2.0	22	85	0	59	37	16	11	34	1.85
10096388--10096450	22	2.9	23	77	13	62	30	20	17	31	1.96
10096368--10096681	132	2.4	131	80	5	335	23	16	17	42	1.88
10096704--10097032	73	4.5	73	82	1	311	17	17	16	48	1.81
10096704--10097064	37	9.9	36	74	10	250	18	17	15	49	1.81
10096775--10097064	73	4.0	72	79	5	246	17	18	15	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10096838--10097059	110	2.0	110	81	5	261	16	18	15	49	1.80
10096704--10097077	146	2.6	146	79	3	360	17	17	15	48	1.81
10097325--10097377	14	4.1	13	80	14	65	83	7	1	7	0.89
10097336--10097376	12	3.4	12	87	12	66	85	7	0	7	0.75
10097333--10097385	24	2.2	24	93	6	90	83	9	1	5	0.89
10098717--10098744	3	9.3	3	100	0	56	67	0	0	32	0.91
10098871--10098925	29	1.9	28	88	3	83	60	16	1	21	1.45
10098921--10099200	29	9.8	29	79	8	211	46	33	1	17	1.57
10098937--10099200	58	4.6	58	78	7	254	46	33	1	18	1.56
10098941--10099182	87	2.8	88	79	6	273	47	35	1	16	1.55
10099110--10099181	14	5.1	14	73	6	65	50	34	0	15	1.44
10099974--10100015	16	2.5	17	73	7	50	47	2	2	47	1.28
10102630--10102697	35	1.9	35	87	0	100	23	4	32	39	1.75
10104972--10105012	18	2.3	18	91	0	64	78	0	2	19	0.87
10104972--10105010	13	3.0	13	85	7	53	79	0	2	17	0.84
10105240--10105297	20	2.8	21	86	5	82	62	0	0	37	0.96
10105381--10105427	24	2.0	24	83	8	60	61	0	0	38	0.96
10105390--10105478	24	3.6	27	79	14	93	48	0	0	51	1.00
10118468--10118501	17	1.9	17	88	5	50	29	8	0	61	1.26
10118594--10118636	6	6.7	6	80	15	50	30	2	0	67	1.03
10119654--10119679	2	13.0	2	100	0	52	50	0	0	50	1.00
10126202--10126233	15	2.0	17	88	11	50	46	3	6	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10132647--10132726	35	2.1	35	84	13	97	50	0	0	50	1.00
10134424--10134470	15	3.1	15	79	11	60	8	0	68	23	1.17
10138402--10138442	15	2.5	15	88	11	55	17	0	51	31	1.46
10138402--10138433	6	5.3	6	92	0	55	18	0	50	31	1.48
10138761--10138813	21	2.5	21	87	0	70	22	26	7	43	1.80
10138810--10138850	21	2.0	21	95	0	73	26	29	4	39	1.77
10141826--10142430	304	2.0	304	86	1	854	34	13	15	37	1.86
10146972--10147412	166	2.7	165	87	3	609	36	10	12	39	1.79
10155776--10156107	133	2.5	134	79	2	362	39	18	12	29	1.88
10157896--10158295	145	2.8	144	82	9	432	46	4	6	41	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129