genome.fa.s24.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  119  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20092926--20092954	3	9.7	3	100	0	58	0	65	0	34	0.93
20093458--20093505	24	2.1	23	85	11	64	37	8	2	52	1.44
20093472--20093520	22	2.2	22	82	13	57	51	6	0	42	1.27
20093532--20093606	30	2.5	30	85	8	107	52	1	5	41	1.33
20097391--20097445	27	2.0	27	100	0	110	49	18	7	25	1.73
20104126--20104211	31	2.7	30	77	12	82	61	1	3	33	1.20
20110428--20110532	13	8.8	13	69	18	50	48	0	0	50	1.07
20111159--20111230	28	2.6	28	78	21	80	52	0	1	45	1.09
20111175--20111230	31	1.9	27	82	13	67	53	0	0	46	1.00
20113421--20113459	9	4.3	9	90	0	60	41	5	33	20	1.74
20126930--20126986	23	2.6	21	79	17	62	40	7	0	52	1.28
20127849--20127918	18	3.6	19	76	7	70	51	0	0	48	1.00
20134113--20134164	18	2.5	21	73	23	56	30	5	3	59	1.39
20135029--20135102	16	4.4	16	72	20	62	51	2	0	45	1.15
20135052--20135103	18	2.8	19	75	18	56	50	0	0	50	1.00
20139338--20139392	27	2.0	28	85	3	76	56	1	3	38	1.28
20144263--20144296	16	2.1	16	94	0	59	52	14	26	5	1.64
20144279--20144391	58	2.0	56	94	3	199	35	18	23	22	1.96
20145325--20145384	29	2.1	29	81	6	68	45	0	6	48	1.29
20148827--20148890	27	2.4	26	75	12	67	40	4	9	45	1.57
20156099--20156129	16	1.9	16	93	0	53	29	0	19	51	1.47
20156101--20156130	14	2.1	14	100	0	60	30	0	20	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20156326--20156394	29	2.3	30	82	2	95	47	1	2	47	1.25
20156492--20156552	30	2.0	30	84	6	79	45	3	0	50	1.17
20156940--20156969	16	1.9	15	93	6	51	50	13	0	36	1.42
20165201--20165229	2	14.5	2	100	0	58	51	0	0	48	1.00
20167477--20167515	20	2.0	20	100	0	78	41	15	5	38	1.69
20168152--20168184	16	2.1	16	100	0	66	51	12	18	18	1.76
20173219--20173277	26	2.3	25	82	5	73	42	6	1	49	1.39
20173693--20173779	27	3.2	27	74	11	79	60	3	3	32	1.30
20176137--20176293	59	2.7	58	82	8	194	39	14	5	40	1.68
20176285--20176318	17	2.0	17	100	0	68	35	5	0	58	1.22
20178429--20178733	85	3.6	85	76	6	238	43	14	18	24	1.86
20178756--20179452	86	8.1	85	78	3	425	43	13	19	23	1.86
20178703--20179457	172	4.4	172	79	2	728	43	14	19	23	1.87
20179607--20179720	17	6.7	17	78	4	122	47	14	10	27	1.77
20179607--20179720	51	2.2	52	80	7	135	47	14	10	27	1.77
20179812--20179855	21	2.1	21	83	8	54	38	15	2	43	1.60
20180487--20180521	17	2.1	17	89	10	54	2	14	0	82	0.77
20180980--20181041	23	2.7	23	80	7	54	9	14	0	75	1.03
20180998--20181033	17	2.2	16	95	5	63	8	11	0	80	0.90
20180992--20181041	23	2.1	23	88	3	73	10	12	0	78	0.98
20180991--20181042	16	3.1	16	81	10	59	9	11	0	78	0.95
20181384--20181434	21	2.5	20	83	6	66	1	9	3	84	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20181396--20181439	23	1.9	23	90	0	70	0	13	4	81	0.83
20184943--20185373	59	7.5	58	79	11	311	36	9	5	48	1.58
20185047--20185364	56	5.6	57	78	10	269	36	7	5	50	1.54
20196509--20196573	33	2.0	33	84	0	85	49	1	1	47	1.20
20196900--20196945	23	1.9	25	82	8	60	52	2	2	43	1.25
20197842--20197884	16	2.7	16	77	0	50	60	2	0	37	1.10
20199473--20199542	30	2.4	30	75	13	74	44	4	4	47	1.42
20200657--20200698	2	21.0	2	100	0	84	50	0	0	50	1.00
20201021--20201065	23	2.0	23	82	8	56	51	8	0	40	1.33
20204271--20204295	13	1.9	13	100	0	50	40	16	0	44	1.47
20209424--20209485	26	2.3	26	83	8	72	45	3	0	51	1.17
20209620--20209698	13	6.4	12	72	15	63	49	0	1	49	1.09
20209620--20209714	14	7.1	14	67	14	58	48	0	1	50	1.07
20209658--20209722	29	2.2	29	80	2	76	52	0	0	47	1.00
20209667--20209724	29	2.0	30	89	3	91	48	0	0	51	1.00
20210329--20210381	26	2.0	26	81	0	61	47	3	5	43	1.45
20221899--20221936	20	1.9	19	94	5	67	44	0	0	55	0.99
20221935--20221978	19	2.2	21	84	8	56	72	0	0	27	0.85
20222311--20222336	12	2.2	12	100	0	52	57	0	0	42	0.98
20229730--20229772	12	3.6	11	79	14	50	41	0	0	58	0.98
20229867--20229891	13	1.9	13	100	0	50	36	0	0	64	0.94
20230414--20230451	14	2.7	15	84	12	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20230992--20231054	30	2.1	29	85	8	83	38	4	3	53	1.38
20252603--20252697	32	3.0	32	87	0	136	28	22	29	20	1.98
20252667--20252969	76	3.9	76	78	10	321	33	24	24	17	1.97
20252653--20252970	158	2.0	158	91	2	514	33	24	24	17	1.96
20257352--20257430	29	2.8	28	75	19	76	40	1	0	58	1.06
20262041--20262084	23	1.9	23	90	0	70	36	25	4	34	1.76
20262098--20262155	20	2.9	20	76	7	64	77	6	6	8	1.12
20262147--20262179	17	1.9	17	88	11	50	78	6	9	6	1.08
20263679--20263718	17	2.4	17	86	0	62	67	2	0	30	1.04
20264520--20264606	29	3.0	28	80	12	95	37	4	5	51	1.46
20264590--20264661	17	4.2	16	72	10	54	47	1	5	45	1.34
20265231--20265308	37	2.1	36	81	6	86	34	3	0	61	1.14
20265250--20265313	12	5.2	13	75	22	66	32	0	0	67	0.91
20265252--20265313	24	2.5	24	85	12	90	32	0	0	67	0.91
20268795--20268837	16	2.5	18	88	7	63	32	2	0	65	1.06
20268797--20268837	18	2.4	16	88	8	55	31	2	0	65	1.05
20268925--20268981	20	2.8	20	73	19	64	35	1	0	63	1.05
20269017--20269068	22	2.4	22	82	17	65	48	0	0	51	1.00
20270486--20270525	21	1.9	21	84	0	53	27	5	12	55	1.58
20274260--20274289	14	2.1	14	100	0	60	33	20	13	33	1.91
20276052--20276085	15	2.2	16	89	5	52	2	23	2	70	1.15
20276832--20276909	39	2.0	39	100	0	156	38	10	15	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20285314--20285366	19	2.7	20	79	2	63	50	1	1	45	1.23
20286665--20286699	11	3.1	12	92	8	56	31	0	0	68	0.90
20286671--20286708	19	2.0	19	89	0	58	31	0	0	68	0.90
20286694--20286724	16	2.0	15	93	6	53	41	0	0	58	0.98
20294615--20294669	28	2.0	28	96	0	101	29	5	14	50	1.65
20295029--20295286	130	2.0	130	97	0	489	35	29	6	29	1.82
20295453--20295485	16	2.0	17	94	5	59	27	12	6	54	1.60
20300667--20300711	23	2.0	22	82	4	54	44	8	6	40	1.62
20302174--20302208	15	2.5	14	86	13	54	28	0	0	71	0.86
20302174--20302214	22	1.9	21	90	5	64	31	0	0	68	0.90
20302174--20302208	7	5.0	7	90	10	54	28	0	0	71	0.86
20302462--20302487	2	13.0	2	100	0	52	50	0	0	50	1.00
20302710--20302746	18	2.2	18	85	9	51	43	2	0	54	1.14
20302795--20302854	29	2.1	29	90	6	95	21	18	3	56	1.55
20304423--20304473	18	2.7	19	73	11	52	56	1	0	41	1.10
20304516--20304550	17	2.0	17	88	5	52	42	0	2	54	1.15
20307988--20308017	12	2.4	12	94	5	51	76	6	3	13	1.11
20308048--20308436	118	3.3	116	85	6	536	35	13	6	44	1.69
20308048--20308436	57	6.7	57	84	6	471	35	13	6	44	1.69
20308458--20308525	25	2.8	24	79	18	63	80	0	5	13	0.87
20308479--20308533	22	2.5	22	82	11	67	83	0	5	10	0.79
20308463--20308533	28	2.6	28	78	17	85	81	0	5	12	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20308458--20308538	32	2.5	32	78	15	94	79	0	7	13	0.94
20308479--20308533	17	3.3	17	76	19	62	83	0	5	10	0.79
20308473--20308525	11	4.5	11	80	19	63	84	0	3	11	0.73
20308458--20308525	7	8.5	8	76	14	61	80	0	5	13	0.87
20309599--20309725	4	31.8	4	66	21	54	66	3	1	29	1.16
20309608--20309653	17	2.5	20	82	13	62	63	2	2	32	1.19
20309599--20309681	25	3.6	23	74	16	66	65	3	1	30	1.17
20309607--20309737	21	6.2	21	68	22	62	65	3	1	29	1.19
20309600--20309737	27	4.9	27	70	21	72	65	3	1	28	1.18
20309946--20310010	20	3.3	19	82	6	76	6	1	7	84	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129