genome.fa.s24.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  67  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10335477--10335742	108	2.4	110	82	4	331	51	10	12	25	1.71
10335505--10335718	56	3.9	55	76	9	186	52	11	12	23	1.72
10337621--10337742	46	2.7	46	93	3	203	45	12	3	39	1.58
10337630--10337741	22	4.9	23	74	23	103	45	11	3	39	1.58
10342262--10342305	21	2.1	21	95	0	79	31	9	2	56	1.43
10342200--10342354	83	1.9	83	80	8	181	36	9	9	45	1.67
10342844--10343013	62	2.7	61	82	9	209	43	9	6	40	1.63
10342782--10343013	122	1.9	124	81	10	287	44	9	7	38	1.65
10342782--10343047	62	4.3	61	75	13	199	43	9	9	38	1.69
10345690--10345738	22	2.2	22	96	0	89	44	6	8	40	1.59
10345800--10345844	17	2.6	17	80	13	56	26	24	8	40	1.84
10347136--10347217	42	1.9	43	87	2	121	30	10	8	50	1.68
10349057--10349085	14	2.1	14	100	0	58	20	31	27	20	1.98
10350010--10350057	23	2.1	22	85	11	62	29	8	25	37	1.85
10351623--10351699	28	2.8	28	95	0	136	51	0	1	46	1.09
10353948--10353972	2	12.5	2	100	0	50	0	48	0	52	1.00
10355179--10355207	2	14.5	2	100	0	58	48	0	0	51	1.00
10358919--10358959	21	1.9	22	85	5	57	24	0	9	65	1.22
10361404--10361497	46	2.0	47	91	6	156	36	9	12	41	1.76
10361417--10361531	46	2.5	45	83	5	122	37	10	12	40	1.77
10364390--10364451	31	2.0	31	90	0	97	8	8	4	79	1.07
10364886--10364929	21	2.0	21	82	4	52	27	4	6	61	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10369551--10369588	20	1.9	20	94	0	67	42	2	0	55	1.14
10369737--10369776	3	13.7	3	89	5	64	30	0	2	67	1.04
10370129--10370185	25	2.3	25	81	3	62	56	0	0	43	0.99
10371542--10371592	24	2.1	24	88	0	75	41	11	3	43	1.60
10371541--10371601	24	2.6	24	82	7	72	45	9	4	39	1.59
10372537--10372588	28	1.9	27	88	7	79	26	3	3	65	1.27
10372614--10372674	28	2.2	27	80	8	68	63	0	1	34	1.04
10373398--10373481	12	7.1	12	74	12	50	51	10	9	28	1.68
10373782--10373807	1	26.0	1	100	0	52	0	0	0	100	0.00
10373846--10373889	16	2.9	15	80	9	54	88	2	4	4	0.68
10373856--10373897	20	2.1	20	86	0	57	88	4	2	4	0.71
10377750--10377775	13	2.0	13	100	0	52	61	15	0	23	1.33
10379637--10379678	21	2.0	21	82	17	52	47	2	9	40	1.49
10380643--10380686	21	2.1	21	83	8	54	34	4	2	59	1.30
10381025--10381123	31	3.2	31	84	4	119	42	12	14	31	1.82
10386134--10386195	24	2.6	24	85	7	90	53	9	3	33	1.50
10386268--10386376	20	5.2	20	73	12	94	54	9	6	30	1.57
10386273--10386376	41	2.5	43	85	3	131	53	9	6	29	1.59
10386379--10386420	22	1.9	22	85	9	59	54	9	7	28	1.59
10386311--10386526	54	4.0	55	84	4	294	54	10	6	28	1.59
10386401--10386507	32	3.7	31	69	25	90	55	11	4	28	1.55
10386433--10386475	22	2.0	22	90	9	70	58	6	4	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10386472--10386527	20	2.6	22	80	8	62	51	12	8	26	1.69
10386494--10386556	31	2.1	30	84	3	81	52	12	9	25	1.69
10386583--10386624	20	2.1	20	86	0	57	57	7	2	33	1.39
10386311--10386618	163	1.9	161	80	10	356	54	10	6	28	1.57
10386627--10386688	23	2.8	23	74	16	67	53	12	4	29	1.59
10386628--10386694	21	3.1	21	80	4	62	52	11	4	31	1.58
10386698--10386743	20	2.4	18	79	10	56	56	8	4	30	1.49
10387646--10387905	85	3.1	84	82	6	317	38	20	12	28	1.89
10387665--10387905	42	5.7	42	83	7	274	39	20	12	27	1.88
10389351--10389399	10	4.6	10	79	20	55	8	4	2	85	0.79
10389345--10389402	23	2.5	23	83	5	73	8	3	1	86	0.76
10396115--10396215	18	5.4	19	75	11	75	47	10	6	34	1.66
10396260--10396320	24	2.5	24	82	7	79	54	8	1	36	1.40
10396251--10396333	44	1.9	43	85	7	114	53	9	2	34	1.47
10396408--10396518	20	5.8	20	68	14	65	54	10	3	31	1.52
10396445--10396579	55	2.5	55	87	3	195	55	11	5	27	1.57
10396484--10396531	16	3.0	17	72	22	50	54	10	4	31	1.53
10396506--10396549	23	2.0	22	90	4	70	54	11	6	27	1.61
10396539--10396614	29	2.5	31	87	6	111	53	11	7	26	1.64
10396539--10396630	29	3.3	27	76	20	91	53	11	7	27	1.64
10396597--10396686	21	4.0	21	77	7	63	54	10	3	32	1.50
10396638--10396716	34	2.3	34	78	10	90	54	7	5	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10396690--10396735	20	2.4	18	82	10	65	54	8	6	30	1.56
10406131--10406165	2	17.5	2	93	0	61	48	0	2	48	1.16
10407304--10407365	19	3.4	17	78	10	54	16	6	3	74	1.16
10407675--10407728	23	2.4	23	84	6	67	18	5	1	74	1.11
10407686--10407735	23	2.2	22	82	3	55	16	10	4	70	1.30
10407807--10407976	9	17.1	9	66	22	58	15	4	4	75	1.10
10407816--10408011	7	25.7	7	69	18	83	15	4	5	75	1.14
10407796--10407910	36	3.1	35	74	14	97	17	4	4	73	1.15
10407861--10407918	22	2.6	22	81	7	64	18	0	5	75	0.98
10407880--10407992	23	4.9	23	68	27	62	15	2	6	75	1.12
10407911--10408011	42	2.4	42	81	6	116	14	4	4	75	1.15
10407807--10407971	10	15.2	10	67	21	59	15	4	4	75	1.11
10407816--10407976	29	5.4	28	68	16	92	16	3	4	75	1.10
10412778--10412873	50	1.9	51	84	2	131	28	15	13	42	1.85
10414293--10414336	22	2.1	22	91	8	74	77	0	13	9	0.99
10414372--10414415	11	3.9	11	82	5	52	29	22	0	47	1.51
10419900--10419984	43	2.0	43	83	4	109	36	20	18	24	1.95
10421534--10421565	2	16.0	2	93	0	55	53	0	46	0	1.00
10424907--10424945	21	1.9	21	89	5	62	76	2	12	7	1.09
10425063--10425109	15	3.3	15	77	17	55	85	10	4	0	0.74
10425068--10425114	6	8.3	6	84	15	57	85	12	2	0	0.70
10425085--10425146	1	62.0	1	73	0	52	87	4	0	8	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10425063--10425128	27	2.3	29	85	12	84	83	9	3	4	0.89
10425063--10425147	34	2.6	31	75	13	82	83	7	3	5	0.90
10425068--10425143	39	1.9	39	84	5	100	84	7	1	6	0.84
10425500--10425951	144	3.2	141	81	3	467	29	12	15	42	1.84
10425500--10426029	144	3.7	141	77	9	435	30	12	14	42	1.83
10427544--10427654	20	5.6	20	77	6	109	45	26	4	24	1.72
10427687--10427776	41	2.2	42	84	7	114	45	33	0	21	1.52
10437798--10437846	22	2.3	21	86	10	64	51	4	6	38	1.46
10438137--10438265	63	2.1	62	92	2	215	27	10	6	54	1.61
10438457--10438526	30	2.3	31	76	14	74	37	17	5	40	1.73
10439691--10439732	14	2.9	15	82	13	52	50	0	2	47	1.14
10441513--10441544	15	2.1	15	94	0	55	50	25	3	21	1.64
10441542--10441633	47	2.0	47	95	0	166	47	17	10	23	1.79
10446410--10446448	20	2.0	20	89	0	60	25	5	7	61	1.44
10446723--10446772	26	1.9	27	88	8	77	6	24	0	70	1.10
10449449--10449543	19	4.9	18	70	22	68	54	9	5	30	1.54
10449757--10449798	20	2.1	20	91	8	68	57	7	4	30	1.47
10450797--10450851	18	2.9	18	84	10	67	67	5	3	23	1.28
10451874--10452299	213	2.0	213	89	2	651	44	15	12	26	1.82
10452246--10452314	22	3.2	21	73	15	77	63	11	2	21	1.40
10452262--10452337	22	3.5	22	70	13	59	64	11	2	21	1.38
10452238--10452356	44	2.7	44	88	3	161	61	10	5	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10452932--10452998	13	5.2	13	74	17	59	55	13	4	26	1.57
10453063--10453167	24	4.2	25	77	17	110	59	8	5	26	1.50
10453063--10453175	27	4.4	25	77	10	97	59	8	5	26	1.49
10454054--10454265	109	1.9	109	99	0	415	32	18	16	32	1.94
10455243--10455304	29	2.2	28	82	2	70	48	8	3	40	1.49
10455499--10455547	5	9.4	5	79	16	55	0	18	2	79	0.83
10455517--10455564	6	8.3	6	86	9	57	0	20	0	79	0.74
10455499--10455554	27	2.0	30	86	10	82	0	19	1	78	0.84
10455499--10455564	16	4.0	16	79	20	66	0	21	1	77	0.85
10455967--10456005	11	3.5	11	85	0	51	25	2	10	61	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129