genome.fa.s24.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  44  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5897920--5897972	26	2.0	26	96	0	97	26	18	26	28	1.98
5897706--5898130	184	2.3	185	86	2	586	22	28	28	21	1.99
5898830--5898877	25	1.9	25	91	0	78	25	16	31	27	1.97
5900595--5900647	26	2.0	26	88	0	79	26	16	24	32	1.97
5903225--5903277	26	2.0	26	92	0	88	26	16	26	30	1.97
5903530--5903561	12	2.7	12	95	0	55	12	25	62	0	1.30
5904417--5904469	26	2.0	26	96	0	97	26	22	24	26	2.00
5903812--5907999	907	4.7	877	85	6	5048	26	23	24	25	2.00
5907074--5907126	26	2.0	26	88	0	79	28	20	24	26	1.99
5907973--5908025	26	2.0	26	92	0	88	26	16	26	30	1.97
5908858--5908889	12	2.7	12	95	0	55	12	25	62	0	1.30
5909757--5909807	26	2.0	26	100	0	102	27	23	25	23	2.00
5910653--5910705	26	2.0	26	92	0	88	24	20	26	28	1.99
5909142--5916067	908	7.7	902	84	4	8481	25	23	24	25	2.00
5911563--5911615	26	2.0	26	88	0	79	30	18	24	26	1.98
5912452--5912503	26	2.0	26	100	0	104	26	19	26	26	1.99
5913583--5913607	4	6.2	4	100	0	50	0	24	76	0	0.80
5914252--5914304	26	2.0	26	92	0	88	28	18	24	28	1.98
5917608--5917660	26	2.0	26	92	0	88	28	18	24	28	1.98
5918510--5918562	26	2.0	26	96	0	97	28	20	24	26	1.99
5919399--5919451	26	2.0	26	96	0	97	24	20	28	26	1.99
5917515--5919952	902	2.7	885	84	5	3244	25	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5920065--5920117	26	2.0	26	92	0	88	28	18	22	30	1.98
5921819--5921870	26	2.0	25	92	3	86	28	19	25	26	1.98
5920406--5926303	919	6.6	871	82	6	6658	25	24	24	25	2.00
5924482--5924560	26	3.0	26	88	0	131	27	20	25	26	1.99
5926277--5926355	26	3.0	26	92	0	140	27	18	25	27	1.98
5926959--5927011	26	2.0	26	92	0	88	26	18	24	30	1.98
5927295--5927344	25	2.0	26	96	4	93	28	20	26	26	1.99
5928036--5928088	26	2.0	26	96	0	97	26	18	26	28	1.98
5928939--5928991	26	2.0	26	92	0	88	24	18	26	30	1.98
5929181--5929233	26	2.0	26	92	0	88	26	20	24	28	1.99
5930083--5930134	26	2.0	26	88	0	77	30	17	25	26	1.97
5932052--5932103	26	2.0	26	88	0	77	23	9	13	53	1.68
5931161--5933110	706	2.7	706	86	4	2709	26	22	23	27	1.99
5933367--5935533	707	3.0	709	87	3	3094	26	22	23	27	2.00
5937117--5937167	26	2.0	26	92	0	84	27	11	29	31	1.92
5941224--5941299	26	2.9	26	100	0	152	27	19	26	26	1.99
5942882--5942960	26	3.0	25	90	3	113	29	16	24	30	1.96
5941276--5944737	893	3.8	918	85	5	4423	26	23	24	26	2.00
5943810--5943862	26	2.0	26	88	0	79	24	18	26	30	1.98
5949296--5959992	872	11.9	853	74	13	5763	25	24	24	25	2.00
5952260--5952423	85	1.9	86	90	3	260	35	15	18	30	1.92
5952749--5952801	26	2.0	26	92	0	88	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5954522--5954571	26	2.0	26	92	4	84	28	18	24	30	1.97
5954547--5954894	157	2.2	157	81	3	394	24	29	27	18	1.98
5956424--5956499	26	2.9	26	86	0	107	28	21	26	23	1.99
5957316--5957610	159	1.9	158	81	7	364	23	29	29	17	1.97
5956476--5959991	864	4.1	864	84	5	4300	25	24	24	25	2.00
5958202--5958259	26	2.3	26	82	5	75	31	17	22	29	1.96
5960660--5960712	26	2.0	26	96	0	97	26	20	24	28	1.99
5961050--5961085	6	6.0	6	87	12	56	19	0	0	80	0.71
5961050--5961085	11	3.0	12	88	12	56	19	0	0	80	0.71
5961050--5961175	11	10.4	11	68	29	55	23	1	2	73	1.04
5961099--5961205	4	27.8	4	68	20	52	25	0	1	72	0.94
5961128--5961175	16	2.8	17	87	6	71	16	0	2	81	0.79
5961051--5961175	18	7.1	17	72	16	87	22	1	2	73	1.03
5961128--5961176	22	2.3	22	86	10	66	18	0	2	79	0.83
5961140--5961199	22	2.6	23	79	12	61	21	0	3	75	0.95
5961163--5961224	27	2.3	27	83	5	72	24	3	1	70	1.10
5961131--5961205	9	9.1	8	73	16	57	20	0	2	77	0.89
5962071--5962211	12	11.4	12	69	19	60	18	2	4	73	1.13
5962071--5962126	4	13.8	4	76	10	51	17	0	5	76	0.96
5962074--5962230	11	15.2	10	68	21	60	17	3	4	73	1.15
5962149--5962202	27	2.0	28	89	10	85	12	7	1	77	1.05
5962162--5962230	16	4.3	16	79	3	77	14	5	1	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5962148--5962233	6	14.3	6	70	17	54	15	6	1	76	1.05
5962162--5962241	27	2.9	27	83	14	85	15	7	1	76	1.07
5962266--5962718	57	7.7	57	84	9	581	44	7	12	36	1.70
5966617--5966676	23	2.7	22	78	2	75	78	0	15	6	0.95
5966650--5966694	18	2.4	18	85	3	54	82	0	11	6	0.84
5966649--5966694	10	4.8	10	81	10	60	82	0	10	6	0.83
5967766--5967824	22	2.7	23	84	7	77	38	8	18	33	1.81
5968012--5968144	43	3.1	41	77	12	133	36	12	16	34	1.87
5968361--5968414	28	1.9	28	96	0	99	20	14	35	29	1.93
5968389--5968542	42	3.7	41	91	2	245	22	19	24	33	1.97
5968509--5968730	100	2.4	88	78	15	236	33	16	17	32	1.92
5968547--5968764	100	2.2	99	89	6	339	43	13	14	28	1.83
5968743--5968784	9	5.0	8	81	18	50	83	4	9	2	0.88
5968741--5968784	16	2.6	16	92	7	70	84	4	9	2	0.85
5969037--5969071	6	5.8	6	90	10	54	20	0	0	80	0.72
5969037--5969166	11	11.4	11	69	16	61	25	1	2	70	1.07
5969086--5969190	4	27.8	4	68	22	50	28	0	0	70	0.94
5969131--5969189	22	2.6	22	83	2	64	23	0	1	74	0.91
5969115--5969190	18	4.2	19	75	11	70	25	0	1	73	0.91
5970065--5970089	7	3.6	7	100	0	50	12	0	0	88	0.53
5970131--5970184	27	2.0	28	85	3	74	11	9	3	75	1.15
5970144--5970227	16	5.2	15	77	8	69	14	7	2	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5970264--5970497	127	1.9	124	86	7	337	46	8	12	32	1.72
5972298--5972350	26	2.0	26	96	0	97	26	18	24	30	1.98
5974684--5976008	713	1.9	710	88	4	1846	25	22	23	27	2.00
5977529--5977580	26	2.0	26	96	0	95	28	26	17	26	1.97
5978428--5978480	26	2.0	26	96	0	97	28	26	18	26	1.98
5977124--5995470	900	20.3	899	78	8	16795	25	24	24	25	2.00
5980222--5980272	26	2.0	26	92	0	84	31	23	15	29	1.95
5981120--5981172	26	2.0	26	88	0	79	26	24	20	28	1.99
5982024--5982102	26	3.0	26	92	0	131	27	25	17	29	1.98
5982961--5983014	26	2.0	27	92	3	92	25	24	22	27	2.00
5983840--5983890	26	2.0	26	88	0	75	29	25	13	31	1.94
5986495--5986547	26	2.0	26	96	0	97	26	24	20	28	1.99
5986548--5986923	188	2.0	188	92	1	619	15	20	37	26	1.92
5987555--5987607	26	2.0	26	92	0	88	26	22	20	30	1.98
5990224--5990272	26	1.9	25	95	4	89	24	28	18	28	1.98
5991115--5991167	26	2.0	26	92	7	90	24	24	20	30	1.99
5992019--5992071	26	2.0	26	96	0	97	26	24	20	28	1.99
5993779--5993831	26	2.0	26	92	0	88	28	24	22	24	2.00
5994678--5994730	26	2.0	26	100	0	106	26	26	20	26	1.99
5996292--5996342	26	2.0	26	92	0	84	31	21	17	29	1.96
5997195--5997273	26	3.0	26	90	0	113	30	24	20	25	1.98
5998123--5998175	26	2.0	26	96	0	97	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5995417--5999704	871	4.8	867	78	10	4079	25	24	23	25	2.00
5999737--5999789	26	2.0	26	86	13	74	28	26	16	28	1.97
6000591--6000643	26	2.0	26	88	0	79	28	22	20	28	1.99
6002740--6002792	26	2.0	26	85	0	70	32	20	18	28	1.97
6003636--6003684	26	1.9	26	95	4	91	24	24	18	32	1.97
6004525--6004574	25	2.0	25	100	0	100	28	28	16	28	1.97
6005417--6005468	26	2.0	26	88	0	77	26	28	17	26	1.97
6006307--6006359	26	2.0	26	92	0	88	28	20	22	28	1.99
6007205--6007257	26	2.0	26	96	0	97	26	26	18	28	1.98
6008105--6008157	26	2.0	26	96	0	97	26	22	22	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129