genome.fa.s24.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  18  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2628302--2628330	11	2.5	12	94	5	51	79	0	0	20	0.74
2628487--2628520	10	3.4	10	91	0	50	5	5	2	85	0.83
2628596--2628637	18	2.3	18	87	0	57	7	9	4	78	1.08
2628722--2628763	1	42.0	1	85	0	57	0	0	7	92	0.37
2628724--2628763	9	4.6	9	96	3	73	0	0	7	92	0.38
2628504--2628869	118	3.1	118	87	6	517	26	13	12	48	1.77
2628841--2628870	15	2.0	15	100	0	60	0	0	6	93	0.35
2628736--2628932	100	2.0	98	81	10	229	27	14	15	43	1.85
2628875--2629063	42	4.5	42	90	0	290	35	23	17	22	1.95
2629037--2629089	26	2.0	26	100	0	106	35	30	15	18	1.92
2629045--2629124	28	2.9	28	87	3	101	31	32	15	21	1.94
2629099--2629183	41	2.0	42	90	2	136	32	22	18	25	1.97
2629383--2629519	43	3.2	42	76	13	136	34	16	13	36	1.87
2629703--2629761	22	2.7	22	84	7	75	33	18	8	38	1.81
2630838--2630885	10	4.9	10	82	5	53	6	14	0	79	0.92
2630828--2630879	19	2.8	19	83	13	72	5	13	0	80	0.88
2634865--2635007	59	2.4	60	84	4	191	31	10	9	48	1.70
2635015--2635114	6	16.7	6	73	18	66	76	1	7	16	1.06
2635025--2635114	16	5.5	16	77	9	92	76	1	6	15	1.04
2635025--2635187	10	14.7	11	70	17	74	74	3	3	18	1.12
2635015--2635114	22	4.5	21	76	11	85	76	1	7	16	1.06
2635015--2635187	38	4.4	38	74	13	120	73	3	4	18	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2635139--2635173	16	2.1	17	89	5	54	80	2	0	17	0.84
2635010--2635190	12	14.8	12	68	20	58	73	3	4	18	1.14
2635139--2635188	24	2.1	24	89	10	77	80	4	0	16	0.87
2636066--2636199	6	20.0	6	71	17	54	69	2	1	26	1.09
2636007--2636114	30	3.6	29	72	20	80	71	0	4	23	1.10
2636062--2636116	14	3.9	14	78	0	65	76	1	0	21	0.88
2636007--2636104	28	3.5	27	74	19	92	71	0	5	23	1.06
2636062--2636196	42	3.5	40	76	15	108	69	2	1	26	1.08
2636066--2636151	33	2.6	32	82	12	93	69	1	0	29	0.96
2636166--2636212	12	3.6	13	83	13	53	76	0	4	19	0.95
2636537--2636588	26	2.0	25	96	3	95	26	23	21	28	1.99
2638015--2639510	723	2.1	719	88	1	2228	26	24	23	25	2.00
2639640--2639692	26	2.0	26	92	0	88	30	24	18	26	1.98
2639666--2641132	718	2.0	720	89	0	2267	26	23	23	26	2.00
2641263--2641315	26	2.0	26	92	0	88	32	26	15	26	1.95
2642126--2642176	26	2.0	26	92	0	84	29	27	17	25	1.98
2642150--2643891	710	2.4	712	88	2	2497	25	24	24	25	2.00
2644406--2644458	26	2.0	26	96	0	97	26	26	18	28	1.98
2643889--2646120	893	2.5	881	86	3	3074	26	24	24	25	2.00
2647356--2647401	15	3.1	15	80	20	53	13	0	4	82	0.81
2647289--2647430	68	2.1	67	80	10	155	24	1	2	71	1.08
2647356--2647405	18	3.1	16	85	8	66	14	0	4	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2647377--2647426	22	2.3	22	82	3	57	26	0	2	72	0.96
2647940--2647988	20	2.5	20	83	3	64	40	20	16	22	1.91
2647950--2647987	20	1.9	20	94	0	67	39	23	18	18	1.92
2648314--2648351	12	3.2	12	82	17	53	15	0	5	78	0.91
2648312--2648359	23	2.1	22	88	11	71	16	0	4	79	0.89
2648309--2648362	27	2.0	26	86	10	74	16	0	3	79	0.87
2648398--2648470	6	11.8	6	72	15	51	15	5	1	78	1.00
2648385--2648438	27	2.0	28	88	3	83	12	9	1	75	1.11
2648309--2648467	16	10.1	16	67	12	80	17	4	3	74	1.14
2648637--2648728	31	3.1	31	61	20	77	40	7	14	38	1.74
2648503--2648957	57	7.7	58	87	6	634	44	7	12	34	1.71
2648504--2648957	117	3.9	116	88	7	650	44	7	12	34	1.71
2651627--2651678	26	2.1	24	82	13	61	30	13	23	32	1.93
2649989--2652280	889	2.5	902	84	5	3010	25	23	24	27	2.00
2654247--2654298	26	2.0	26	92	7	88	30	19	23	26	1.98
2654859--2654911	26	2.0	26	85	0	70	28	20	26	24	1.99
2656411--2656463	26	2.0	26	88	0	79	26	18	24	30	1.98
2659051--2659103	26	2.0	26	100	0	106	26	20	26	26	1.99
2659957--2660009	26	2.0	26	88	0	79	28	16	24	30	1.97
2660860--2660912	26	2.0	26	85	7	72	30	18	24	26	1.98
2661757--2661809	26	2.0	26	96	0	97	32	20	20	26	1.98
2658173--2665778	895	8.5	895	85	3	9444	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2663532--2663584	26	2.0	26	92	0	88	24	18	28	28	1.98
2664435--2664487	26	2.0	26	85	7	72	30	18	24	26	1.98
2663476--2665776	907	2.6	899	87	3	3201	25	23	25	25	2.00
2665342--2665394	26	2.0	26	92	0	88	22	20	26	30	1.98
2666769--2666951	90	2.0	90	100	0	366	22	18	34	24	1.96
2667107--2667157	26	2.0	26	84	0	66	31	11	25	31	1.92
2668011--2668061	26	2.0	26	96	0	93	31	15	23	29	1.95
2668674--2671485	906	3.1	901	86	2	3812	25	23	25	25	2.00
2670460--2670512	26	2.0	26	88	0	79	30	16	26	26	1.97
2671353--2671405	26	2.0	26	88	0	79	28	20	20	30	1.98
2676503--2676555	26	2.0	26	92	0	88	28	22	22	26	1.99
2672971--2681865	897	10.0	894	85	4	11228	25	24	24	25	2.00
2680046--2680096	26	2.0	26	96	0	93	27	17	27	27	1.98
2680945--2680997	26	2.0	26	100	0	106	26	20	26	26	1.99
2682550--2682602	26	2.0	26	85	0	70	28	18	24	28	1.98
2683449--2683501	26	2.0	26	96	0	97	28	18	26	26	1.98
2681818--2692413	904	11.8	897	86	3	13948	25	24	24	25	2.00
2684338--2684390	26	2.0	26	92	0	88	26	16	28	28	1.97
2685236--2685288	26	2.0	26	96	0	97	26	18	26	28	1.98
2687032--2687084	26	2.0	26	96	0	97	26	22	24	26	2.00
2689694--2689746	26	2.0	26	88	0	79	26	18	26	28	1.98
2690598--2690650	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2691648--2694396	736	3.8	705	84	7	3579	26	23	23	26	2.00
2695430--2695479	26	1.9	26	100	0	100	28	16	26	30	1.96
2696544--2696594	26	2.0	26	92	0	84	25	25	25	23	2.00
2697448--2697500	26	2.0	26	96	0	97	24	20	28	26	1.99
2695814--2698234	892	2.7	882	84	6	3083	25	23	24	26	2.00
2699287--2701816	906	2.8	902	85	3	3365	25	25	22	25	2.00
2703517--2703699	90	2.0	90	98	0	357	24	33	18	23	1.96
2705074--2705126	26	2.0	26	88	0	79	30	24	20	24	1.99
2705981--2706033	26	2.0	26	89	7	81	24	24	20	30	1.99
2706834--2706886	26	2.0	26	88	0	79	26	20	22	30	1.98
2707737--2707789	26	2.0	26	92	0	88	28	28	18	24	1.98
2710372--2710424	26	2.0	26	85	7	72	26	24	18	30	1.98
2711275--2711327	26	2.0	26	88	0	79	28	28	16	26	1.97
2712179--2712231	26	2.0	26	100	0	106	26	26	20	26	1.99
2706776--2716192	903	10.6	899	82	6	10581	25	24	23	25	2.00
2714134--2716192	874	2.3	892	87	3	2718	27	23	22	25	2.00
2716367--2716419	26	2.0	26	88	0	79	24	28	20	26	1.99
2716980--2717031	26	2.0	26	96	0	95	26	25	19	28	1.98
2716628--2721316	862	5.3	864	82	7	4961	25	24	24	25	2.00
2720574--2720626	26	2.0	26	96	0	97	28	26	18	26	1.98
2722376--2722827	117	3.9	115	87	7	642	34	12	8	44	1.72
2722376--2722827	59	7.7	57	88	7	622	34	12	8	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2722604--2722695	31	3.1	31	61	20	77	38	14	7	40	1.74
2722584--2722820	122	1.9	122	89	6	365	34	13	8	44	1.73
2722865--2722927	16	3.9	15	76	12	63	77	1	6	14	1.03
2722891--2722944	27	2.0	28	88	3	83	75	1	9	12	1.11
2722860--2722931	6	11.8	6	73	18	51	77	1	5	15	1.01
2722967--2723016	4	12.5	4	78	16	50	78	4	0	18	0.91
2722868--2723019	12	12.5	12	68	18	59	73	3	4	17	1.16
2722967--2723022	28	2.0	27	86	10	78	80	3	0	16	0.85
2722970--2723019	24	2.1	24	89	10	77	80	4	0	16	0.87
2723874--2723915	20	2.0	20	86	4	57	69	0	4	26	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129