genome.fa.s24.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  55  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7905695--7905724	15	2.0	15	100	0	60	46	6	6	40	1.56
7906062--7906156	17	5.9	15	68	26	52	18	4	4	72	1.17
7910682--7910720	19	2.0	20	90	5	62	74	0	15	10	1.07
7911065--7911128	9	7.1	9	81	12	69	82	1	14	1	0.81
7911067--7911126	17	3.5	17	78	17	70	83	1	13	1	0.80
7911064--7911123	27	2.2	28	84	3	77	85	1	11	1	0.76
7911065--7911128	25	2.5	26	82	14	80	82	1	14	1	0.81
7911905--7911943	6	6.5	6	93	0	69	33	30	15	20	1.94
7911913--7911953	18	2.3	18	87	8	57	34	29	17	19	1.94
7912076--7912105	6	5.2	6	96	4	53	20	33	30	16	1.94
7912419--7912790	60	6.2	60	79	5	258	25	26	12	35	1.91
7912420--7912818	120	3.3	120	76	4	290	25	27	11	35	1.91
7912599--7912691	29	3.1	29	65	22	66	24	31	12	31	1.93
7912594--7912790	60	3.3	60	87	2	263	25	27	12	34	1.92
7912594--7912812	119	1.8	120	80	4	264	25	27	11	34	1.91
7913239--7913275	3	12.3	3	94	0	65	32	0	2	64	1.07
7913274--7913380	3	35.7	3	94	0	178	36	30	0	32	1.58
7913901--7913944	19	2.3	19	84	7	54	36	6	13	43	1.71
7914173--7914264	18	5.2	16	77	15	76	19	1	7	71	1.16
7924658--7924695	3	12.7	3	94	0	67	63	2	0	34	1.09
7927329--7927371	3	14.3	3	95	0	77	34	32	0	32	1.58
7927718--7927746	12	2.5	12	94	5	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7930692--7930862	87	2.0	87	90	0	270	40	21	8	29	1.83
7930873--7932520	160	10.2	161	74	10	1057	42	15	10	31	1.79
7931129--7932536	324	4.4	324	80	6	1301	43	15	10	31	1.80
7930873--7932536	161	10.3	162	74	8	1164	43	15	9	31	1.79
7937678--7937748	36	2.0	36	97	0	133	22	23	5	47	1.72
7943298--7943334	19	1.9	19	88	0	56	67	2	21	8	1.29
7943871--7943926	20	2.6	23	75	13	66	30	5	8	55	1.53
7943872--7944048	55	3.1	55	80	7	201	29	6	11	51	1.64
7943890--7943961	35	2.2	32	80	7	81	29	6	11	52	1.62
7944290--7944383	20	4.8	20	74	10	88	31	6	10	51	1.62
7944292--7944419	55	2.3	55	81	10	143	32	7	11	48	1.67
7945480--7945518	19	1.9	19	85	10	51	23	10	2	64	1.37
7951709--7951884	42	4.1	43	85	2	221	28	14	19	38	1.90
7951709--7951884	85	2.1	85	84	4	230	28	14	19	38	1.90
7952147--7952180	12	2.7	13	86	9	52	20	0	8	70	1.13
7952766--7952829	31	2.1	31	90	0	101	28	7	12	51	1.67
7952797--7952954	60	2.8	55	87	4	226	31	6	10	51	1.61
7952909--7952951	23	1.9	23	90	4	70	30	9	6	53	1.59
7953102--7953163	24	2.6	24	85	7	81	33	3	8	54	1.46
7953090--7953159	19	3.3	20	68	25	54	32	4	8	54	1.50
7953089--7953172	44	1.9	44	85	9	118	33	3	9	53	1.51
7953264--7953374	20	5.8	20	71	16	83	34	5	10	49	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7954413--7954449	3	12.3	3	100	0	74	67	0	0	32	0.91
7958790--7958945	79	2.0	79	92	0	258	33	10	6	50	1.62
7959531--7959569	17	2.2	18	86	4	53	79	2	12	5	1.00
7960838--7960870	12	2.6	13	85	9	50	84	0	15	0	0.61
7962896--7962982	44	2.0	44	82	8	106	28	9	13	48	1.73
7962925--7963144	112	2.0	112	82	2	273	35	11	11	42	1.77
7963244--7963422	74	2.4	73	80	2	189	36	6	11	45	1.66
7963391--7963434	21	2.1	21	86	0	61	34	2	11	52	1.50
7963400--7963443	21	2.1	21	86	0	61	29	4	13	52	1.60
7964403--7964684	83	3.4	82	75	5	246	29	11	18	40	1.86
7964875--7965036	49	3.3	48	79	10	168	25	8	21	45	1.79
7969282--7969315	15	2.3	15	89	0	50	73	0	5	20	1.04
7974164--7974324	81	2.0	81	92	0	268	27	14	19	37	1.91
7975195--7975230	16	2.2	17	95	5	65	50	0	38	11	1.38
7983227--7983938	235	3.0	235	97	0	1325	28	18	14	38	1.90
7987348--7987378	14	2.1	15	94	5	55	29	16	9	45	1.79
7988945--7988986	11	3.8	11	93	0	75	21	0	28	50	1.49
7988944--7988986	22	2.0	22	100	0	86	23	0	27	48	1.51
7989011--7989167	52	3.0	52	88	1	217	40	8	25	25	1.84
7989710--7989812	25	4.2	24	79	7	93	32	7	37	22	1.83
7989704--7989812	50	2.2	48	87	6	148	33	8	36	22	1.84
7990030--7990071	11	3.8	11	93	0	75	21	0	28	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7990029--7990071	22	2.0	22	100	0	86	23	0	27	48	1.51
7990096--7990252	52	3.0	52	89	1	226	40	8	25	26	1.83
7992335--7992383	18	2.9	16	76	8	53	18	2	2	77	0.96
7992806--7992879	16	4.7	16	93	3	132	51	28	0	20	1.48
7992806--7992879	31	2.3	32	95	2	132	51	28	0	20	1.48
7992910--7992940	16	1.9	16	93	0	53	45	35	0	19	1.51
7998271--7998326	14	3.7	14	78	17	58	85	10	1	1	0.74
7998269--7998326	8	7.5	8	79	14	68	86	10	1	1	0.73
7998616--7998646	7	4.3	7	92	8	53	38	12	12	35	1.82
7998616--7998646	15	2.1	14	94	5	53	38	12	12	35	1.82
7999158--7999203	12	3.9	12	81	13	60	84	13	2	0	0.71
8000906--8000989	41	2.0	41	88	0	123	33	20	14	32	1.92
8001475--8001539	23	2.9	23	86	2	87	26	26	21	26	2.00
8001508--8001550	22	2.0	22	85	0	59	32	25	20	20	1.97
8001366--8001632	133	2.0	131	85	4	358	24	22	17	35	1.95
8001722--8001787	22	3.0	22	84	0	96	25	27	18	28	1.98
8001637--8001887	132	1.9	132	89	2	389	23	23	17	35	1.95
8001854--8001897	22	2.0	22	95	0	79	29	27	15	27	1.96
8001326--8002481	241	4.6	242	78	10	1006	23	21	18	36	1.94
8001848--8002292	132	3.4	132	84	1	579	23	22	18	35	1.96
8001744--8002007	110	2.4	110	89	1	395	22	23	18	35	1.96
8001959--8002028	23	3.1	22	87	4	95	24	22	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8001963--8002029	22	3.0	22	88	2	89	25	25	22	26	2.00
8002089--8002147	23	2.6	23	89	2	93	22	25	22	30	1.99
8002095--8002161	22	3.0	22	84	2	80	23	25	20	29	1.99
8002240--8002302	23	2.8	22	83	4	81	26	20	17	34	1.95
8002239--8002307	22	3.1	22	81	4	84	24	20	21	33	1.97
8002382--8002424	22	2.0	22	85	0	59	27	23	18	30	1.98
8002270--8002481	110	1.9	110	86	1	300	21	21	19	38	1.94
8004218--8004351	31	4.4	30	83	3	169	48	32	0	19	1.49
8004218--8004361	15	9.5	15	80	5	146	47	33	0	18	1.49
8004223--8004351	46	2.8	46	96	2	233	48	31	0	20	1.50
8004360--8004422	30	2.1	30	85	5	83	46	30	1	22	1.61
8006598--8006636	17	2.2	19	86	9	55	38	12	2	46	1.56
8009095--8009141	18	2.6	18	90	6	69	48	14	12	23	1.78
8010149--8010187	20	1.9	21	94	5	71	20	7	5	66	1.36
8018641--8018828	70	2.7	70	77	3	182	53	16	15	14	1.74
8018703--8019002	35	8.6	35	78	2	208	50	16	17	16	1.79
8018665--8019002	105	3.2	104	76	1	298	50	16	16	15	1.78
8019091--8019157	34	2.0	32	83	11	82	61	14	8	14	1.56
8019150--8019301	35	4.3	36	77	8	143	53	18	15	11	1.71
8020235--8020290	6	9.2	6	81	14	62	1	12	3	82	0.88
8020235--8020290	26	2.3	25	82	17	73	1	12	3	82	0.88
8020242--8020290	26	1.9	26	88	12	75	2	12	4	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8022092--8022150	31	1.9	31	85	0	82	20	18	18	42	1.90
8027237--8027314	39	2.0	39	87	5	113	37	8	33	20	1.84
8032851--8032884	17	2.0	17	88	0	50	67	2	29	0	1.05
8032851--8032883	16	2.0	17	88	5	50	66	3	30	0	1.06
8041269--8041305	11	3.6	11	79	20	53	27	0	16	56	1.40
8041266--8041304	19	2.1	19	100	0	78	25	0	15	58	1.37
8042973--8043020	21	2.3	21	82	7	53	52	10	6	31	1.60
8048162--8048206	19	2.4	18	89	7	72	46	24	6	22	1.75
8057137--8057221	41	2.1	41	95	0	152	32	20	12	34	1.90
8058695--8058750	27	2.0	28	82	3	69	42	0	3	53	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129