genome.fa.s24.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  116  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19436668--19436728	30	2.1	29	84	3	77	45	8	8	37	1.64
19438001--19438058	23	2.8	19	76	18	62	55	3	6	34	1.44
19438125--19438172	16	3.0	16	81	6	53	50	4	10	35	1.56
19438199--19438285	30	3.0	30	75	14	101	57	0	0	42	0.98
19438204--19438308	34	2.9	37	80	11	119	55	0	0	43	1.06
19438205--19438308	23	4.4	23	80	9	111	55	0	0	43	1.06
19438205--19438291	15	6.0	15	72	22	78	56	0	0	43	0.99
19438334--19438424	19	5.2	18	71	18	66	47	1	1	50	1.15
19438331--19438425	34	2.7	36	79	10	92	46	1	1	51	1.15
19438351--19438426	16	4.4	16	71	17	55	48	0	0	51	1.00
19438586--19438614	14	2.1	14	93	6	51	41	6	0	51	1.28
19442366--19442400	16	2.2	16	89	0	52	34	20	28	17	1.95
19448160--19448196	15	2.5	15	86	4	58	56	2	0	40	1.13
19448408--19448445	20	1.9	20	94	0	67	47	0	0	52	1.00
19448406--19448448	20	2.4	17	75	20	50	51	0	0	48	1.00
19448426--19448477	26	1.9	28	84	7	72	59	0	0	40	0.97
19448477--19448545	31	2.2	31	87	7	104	42	4	0	53	1.20
19449098--19449146	23	2.1	23	81	7	55	42	2	6	48	1.39
19449418--19449467	25	2.0	25	88	11	77	46	8	10	36	1.67
19449436--19449515	39	2.0	41	86	11	114	42	6	11	40	1.66
19456465--19456572	2	54.0	2	81	0	108	43	4	6	45	1.50
19456466--19456572	16	6.7	16	78	8	119	42	4	6	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19464664--19464991	172	1.9	172	84	6	439	45	14	14	25	1.83
19470026--19470065	2	20.0	2	100	0	80	50	0	0	50	1.00
19471722--19471774	27	2.0	26	82	10	63	54	5	0	39	1.24
19474849--19474888	18	2.2	18	90	0	62	50	0	0	50	1.00
19476270--19476328	29	2.0	29	90	0	91	50	0	8	40	1.33
19477510--19477548	2	19.5	2	100	0	78	51	0	0	48	1.00
19484212--19484251	21	1.9	21	85	10	55	65	0	7	27	1.20
19485381--19485424	23	1.9	23	85	0	61	6	22	2	68	1.25
19497600--19497640	17	2.4	17	87	4	55	68	17	12	2	1.31
19498134--19498168	14	2.5	14	90	0	52	62	0	0	37	0.95
19498505--19498540	11	3.4	11	84	7	56	72	2	0	25	0.98
19506963--19507000	13	3.0	13	81	18	53	71	0	0	28	0.87
19506969--19506998	11	2.6	11	94	5	51	73	0	0	26	0.84
19514984--19515039	26	2.2	26	93	0	94	48	0	0	51	1.00
19521934--19522225	96	3.1	94	63	22	219	28	11	6	53	1.62
19521920--19522267	191	1.8	191	95	0	633	31	10	5	52	1.58
19522664--19522708	14	3.0	16	75	15	51	28	0	2	68	1.01
19522906--19522941	18	1.9	19	88	5	56	36	0	0	63	0.94
19523262--19523300	20	1.9	21	84	5	53	61	0	7	30	1.24
19523490--19523561	29	2.5	29	76	17	78	45	0	1	52	1.09
19523538--19523580	22	2.0	22	81	9	52	48	0	2	48	1.14
19524487--19524520	15	2.3	15	89	0	50	47	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19524795--19524947	49	3.1	50	67	16	136	52	11	15	20	1.74
19524914--19524977	29	2.2	30	88	2	94	51	15	17	15	1.77
19525762--19525790	13	2.1	14	93	6	51	79	0	10	10	0.94
19532644--19532678	18	1.9	18	88	0	52	37	20	2	40	1.67
19537634--19537671	19	2.0	19	89	0	58	52	0	0	47	1.00
19538211--19538269	23	2.5	24	86	5	77	50	3	0	45	1.18
19538218--19538249	16	1.9	17	93	6	57	50	0	0	50	1.00
19538278--19538306	13	2.1	14	93	6	51	58	0	0	41	0.98
19538294--19538331	19	2.0	20	94	5	69	65	0	2	31	1.06
19544527--19544680	54	2.9	52	83	3	200	40	6	9	43	1.63
19560017--19560051	16	2.2	16	89	0	52	77	8	8	5	1.13
19561197--19561248	23	2.2	24	82	3	61	65	1	1	30	1.14
19561557--19561623	13	4.8	13	72	13	53	49	26	4	19	1.67
19561619--19561677	7	8.1	7	76	12	57	54	20	0	25	1.45
19561621--19561676	15	3.9	14	77	20	53	57	17	0	25	1.41
19561636--19561679	16	2.9	15	87	12	56	56	22	0	20	1.42
19561704--19561742	16	2.4	17	86	4	53	51	20	0	28	1.48
19563747--19563777	13	2.5	12	94	5	53	90	3	6	0	0.55
19565139--19565209	4	17.8	4	77	11	65	23	21	2	52	1.60
19565139--19565209	32	2.2	32	89	0	106	23	21	2	52	1.60
19566822--19566864	1	43.0	1	83	0	50	90	2	4	2	0.59
19566822--19566864	14	3.3	13	87	9	61	90	2	4	2	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19567040--19567081	18	2.3	18	91	0	66	28	14	14	42	1.84
19568060--19568097	14	2.5	15	83	12	51	73	0	18	7	1.06
19568038--19568086	23	2.1	23	85	7	64	75	2	18	4	1.06
19568438--19568476	6	6.5	6	85	11	53	87	0	2	10	0.65
19568964--19569103	63	2.2	64	82	6	160	34	19	14	32	1.91
19569048--19569266	33	6.7	33	73	6	133	31	20	15	32	1.94
19569955--19570013	22	2.7	22	79	7	57	33	23	10	32	1.88
19569834--19570079	132	1.9	132	82	5	318	24	20	15	39	1.91
19570072--19570254	74	2.5	74	77	8	210	15	24	14	45	1.83
19570023--19570255	37	6.3	37	70	15	115	16	23	14	45	1.84
19570543--19570777	118	2.0	118	98	0	452	26	43	11	19	1.84
19572203--19572274	29	2.4	29	80	15	85	54	23	0	22	1.45
19572203--19572276	8	10.0	7	70	21	53	52	25	0	21	1.47
19572225--19572276	23	2.3	23	86	3	70	53	26	0	19	1.45
19583924--19583971	2	24.0	2	82	0	60	41	0	8	50	1.33
19583933--19583980	22	2.2	22	92	0	78	37	0	12	50	1.41
19583925--19583980	26	2.2	26	90	0	94	39	0	10	50	1.37
19584960--19585064	54	1.9	54	98	0	201	46	11	8	33	1.70
19589953--19590051	51	1.9	51	87	0	144	39	19	25	16	1.91
19593663--19593695	16	2.1	16	88	11	50	51	0	6	42	1.26
19593937--19593994	22	2.6	22	71	17	57	46	1	1	50	1.22
19595952--19596226	138	2.0	138	92	1	453	28	18	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19596526--19596574	18	2.7	19	76	17	50	48	4	0	46	1.20
19600391--19600434	2	22.0	2	95	0	79	47	2	50	0	1.13
19601852--19601893	15	2.7	15	85	10	50	64	2	0	33	1.07
19610082--19610121	20	2.0	20	85	4	55	37	0	0	62	0.95
19610120--19610163	11	3.8	11	80	11	52	27	4	2	65	1.23
19612602--19612632	16	1.9	16	100	0	62	9	19	12	58	1.62
19612884--19612970	28	3.0	28	85	8	95	44	0	1	54	1.07
19612900--19612951	14	3.8	14	73	12	54	48	0	0	51	1.00
19612884--19612950	35	1.9	35	82	11	84	46	0	0	53	1.00
19612947--19612983	18	2.0	19	94	5	67	35	0	5	59	1.20
19613030--19613080	27	1.9	26	84	4	66	50	5	0	43	1.26
19618100--19618137	2	19.5	2	83	5	51	47	5	0	47	1.24
19620026--19620081	23	2.5	22	80	11	60	23	3	3	69	1.20
19621868--19621900	17	2.1	16	88	11	50	45	0	0	54	0.99
19621949--19622003	18	2.9	19	78	13	69	41	1	0	56	1.10
19621959--19622040	31	2.6	31	84	5	103	45	0	0	54	0.99
19630929--19630957	6	4.8	6	100	0	58	13	68	0	17	1.20
19632320--19632354	2	18.0	2	94	5	63	48	0	0	51	1.00
19632531--19632582	21	2.5	21	90	6	79	50	0	0	50	1.00
19632531--19632582	22	2.5	22	93	6	90	50	0	0	50	1.00
19634853--19634938	22	4.0	22	76	15	74	60	0	0	39	0.97
19634877--19634939	31	2.0	31	84	9	83	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19634890--19634944	26	2.2	25	83	9	67	65	0	0	34	0.93
19635464--19635540	34	2.3	33	78	10	84	64	0	0	35	0.93
19635489--19635539	16	3.4	16	79	20	74	68	0	0	31	0.90
19635485--19635539	28	1.9	29	96	3	103	69	0	0	30	0.89
19635483--19635545	12	5.4	12	82	16	71	66	0	0	33	0.92
19636513--19636573	31	2.0	31	81	12	72	42	1	0	55	1.09
19636551--19636599	22	2.3	21	86	10	64	48	0	0	51	1.00
19636893--19637071	18	10.9	17	67	22	80	54	3	0	41	1.23
19636910--19636952	16	2.8	15	86	6	68	58	4	0	37	1.19
19636893--19637059	49	3.4	49	73	15	141	55	2	0	41	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129