genome.fa.s24.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  69  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10675329--10675383	28	2.0	28	96	0	101	30	21	10	36	1.88
10676462--10676493	13	2.4	14	85	15	50	59	0	6	34	1.23
10676974--10677010	17	2.2	17	90	0	56	35	0	0	64	0.94
10681922--10681989	28	2.4	28	76	14	66	58	2	0	38	1.13
10682022--10682088	27	2.5	28	76	11	68	53	2	0	43	1.16
10682138--10682175	19	2.1	18	90	5	58	78	0	0	21	0.74
10682138--10682175	15	2.4	16	91	4	60	78	0	0	21	0.74
10682390--10682441	2	27.0	2	78	7	54	51	7	0	40	1.30
10684698--10684749	5	10.2	5	83	4	59	61	0	32	5	1.20
10686566--10686590	2	12.5	2	100	0	50	48	0	0	52	1.00
10687680--10687967	153	1.9	153	96	0	531	37	19	13	28	1.90
10690909--10690950	22	1.9	22	85	0	57	21	14	7	57	1.61
10691883--10691941	26	2.3	26	88	2	84	49	1	1	47	1.21
10691899--10691950	26	2.0	26	88	3	79	42	0	1	55	1.10
10692965--10693007	15	3.0	15	80	19	56	46	11	0	41	1.40
10698296--10698345	20	2.5	20	90	0	73	22	6	12	60	1.53
10698347--10698417	20	3.8	19	70	22	62	33	7	9	49	1.63
10698335--10698442	35	3.1	35	90	0	162	33	4	10	51	1.56
10698340--10698397	15	3.6	15	73	22	55	32	6	10	50	1.63
10698455--10698592	20	7.1	20	74	14	85	32	5	11	50	1.60
10698558--10698602	10	4.5	10	77	0	54	35	4	4	55	1.40
10698569--10698660	35	2.7	35	78	9	100	29	3	9	57	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10703350--10703389	20	2.0	21	85	5	55	67	5	10	17	1.37
10706751--10706868	59	2.0	59	93	0	200	37	5	22	34	1.78
10706770--10706893	59	2.1	59	80	3	133	44	7	16	31	1.75
10711256--10711282	12	2.2	12	100	0	54	7	7	0	85	0.75
10717985--10718014	12	2.5	12	94	0	51	23	3	6	66	1.30
10734462--10734501	21	1.9	21	84	0	53	12	25	32	30	1.92
10735182--10735220	20	2.0	20	94	0	69	48	20	2	28	1.62
10735214--10735251	18	2.1	18	95	0	67	36	23	2	36	1.69
10750552--10750611	20	3.2	19	74	6	68	43	23	18	15	1.87
10754077--10754124	23	2.0	24	88	4	71	33	6	22	37	1.80
10754272--10754299	2	14.0	2	100	0	56	50	0	0	50	1.00
10756009--10756052	20	2.1	21	87	4	63	40	20	2	36	1.65
10756188--10756221	2	17.0	2	100	0	68	50	0	0	50	1.00
10777658--10777699	20	2.1	20	100	0	84	26	23	9	40	1.85
10780587--10780615	15	1.9	15	100	0	58	82	0	3	13	0.79
10785157--10785368	109	1.9	109	90	1	336	31	12	25	30	1.93
10785813--10786168	181	2.0	182	93	1	608	38	11	18	31	1.86
10793644--10793702	22	2.8	22	80	14	70	37	20	15	27	1.92
10793809--10793873	22	2.9	23	86	4	96	41	23	4	30	1.74
10793811--10793908	22	4.3	23	75	10	85	38	21	6	33	1.78
10793811--10793946	45	3.0	45	76	11	118	36	22	4	36	1.75
10793809--10793994	22	8.1	23	71	9	78	34	23	5	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10793931--10794001	24	3.0	24	76	12	74	30	19	8	40	1.81
10793917--10794007	46	2.0	45	81	12	105	32	19	6	40	1.78
10804930--10804998	28	2.4	29	75	15	72	50	14	0	34	1.43
10819661--10819709	16	3.0	16	81	3	53	55	4	12	28	1.55
10832942--10833028	41	2.2	40	81	4	102	44	8	6	40	1.61
10838441--10838466	6	4.3	6	100	0	52	19	0	19	61	1.35
10838554--10838583	13	2.3	13	94	0	51	0	10	0	90	0.47
10842080--10842145	17	3.9	17	68	11	55	37	1	10	50	1.47
10844108--10844210	52	2.0	52	86	0	143	30	20	8	40	1.82
10842720--10845086	929	2.6	922	83	3	2974	34	22	9	34	1.86
10846413--10846516	52	2.0	52	88	3	156	29	22	7	40	1.81
10850128--10850187	21	2.9	20	95	5	102	31	10	10	48	1.70
10863918--10864046	67	1.9	67	92	3	215	41	7	13	36	1.74
10866318--10866357	18	2.1	20	90	9	66	72	5	10	12	1.26
10868337--10868363	13	2.1	13	100	0	54	14	29	7	48	1.71
10875615--10875653	19	2.1	18	90	4	60	66	12	0	20	1.24
10876182--10876220	11	3.5	11	80	13	53	51	10	10	28	1.68
10876180--10876221	22	1.9	22	95	0	75	50	11	9	28	1.70
10877698--10877851	77	2.0	77	97	0	290	50	13	8	27	1.71
10880070--10880104	17	2.0	18	94	5	63	5	0	48	45	1.26
10880065--10880111	24	1.9	25	86	4	69	8	0	44	46	1.33
10880065--10880155	13	6.9	14	71	16	59	12	1	39	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10880090--10880140	26	1.9	27	92	4	86	13	0	37	49	1.43
10880094--10880176	41	2.0	41	83	4	105	15	2	36	45	1.60
10880212--10880269	24	2.3	26	85	8	75	12	3	37	46	1.58
10881689--10882021	145	2.3	144	81	4	357	43	13	11	31	1.79
10881760--10882169	144	2.9	143	77	7	379	43	13	11	30	1.80
10883522--10883550	14	2.1	14	93	6	51	89	6	0	3	0.57
10889834--10889881	10	5.2	9	78	12	53	72	0	0	27	0.84
10889835--10889879	3	14.7	3	82	13	56	71	0	0	28	0.87
10889966--10890066	13	7.7	13	75	9	89	54	19	3	21	1.60
10889966--10890066	26	3.9	25	83	11	114	54	19	3	21	1.60
10889966--10890085	52	2.3	53	79	11	124	55	20	5	20	1.62
10890313--10890359	15	3.1	16	87	6	62	72	2	0	25	0.96
10890540--10890581	19	2.2	20	87	12	61	69	4	4	21	1.26
10893083--10893164	17	4.8	17	70	14	53	50	1	0	48	1.08
10899381--10899414	6	5.7	6	86	13	52	14	0	0	85	0.60
10901125--10901165	17	2.4	17	87	0	55	36	17	14	31	1.90
10902549--10902656	58	1.9	56	86	3	153	18	17	8	55	1.66
10909118--10909160	19	2.3	19	83	0	50	39	0	25	34	1.56
10915921--10915949	2	14.5	2	100	0	58	48	0	0	51	1.00
10918482--10918511	14	2.1	14	100	0	60	80	0	6	13	0.91
10927516--10928189	298	2.3	286	81	7	704	35	14	12	38	1.83
10928303--10928400	49	2.0	49	97	0	187	29	6	20	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10930869--10930937	21	3.1	21	62	18	50	42	17	21	18	1.90
10930880--10930949	21	3.2	21	62	18	52	44	18	20	17	1.87
10932768--10932794	14	1.9	14	100	0	54	44	0	7	48	1.31
10932804--10933020	109	2.0	109	95	0	389	41	6	7	44	1.58
10940152--10940246	48	2.0	48	91	0	154	43	15	18	22	1.88
10944730--10944819	45	2.0	45	100	0	180	37	22	11	28	1.88
10944748--10944818	22	3.2	22	61	11	54	36	26	8	28	1.86
10946351--10946546	103	1.9	103	85	2	268	40	10	9	39	1.72
10948494--10948524	16	1.9	16	93	0	53	54	6	12	25	1.62
10954171--10954204	16	2.1	16	88	0	50	52	23	0	23	1.47
10960753--10960838	41	2.1	41	89	2	129	36	16	11	36	1.85
10964326--10964355	13	2.3	13	94	0	51	60	6	0	33	1.23
10966960--10966998	20	1.9	20	84	5	51	12	10	15	61	1.56
10967599--10967955	112	3.2	109	79	4	349	29	11	17	41	1.85
10967599--10968020	112	3.8	112	78	6	297	29	11	16	42	1.84
10969527--10969558	2	16.5	2	93	6	57	46	0	0	53	1.00
10971016--10971046	16	1.9	16	100	0	62	67	19	0	12	1.22
10971215--10971262	24	1.9	24	87	8	69	47	4	2	45	1.33
10972254--10972470	108	2.0	108	98	0	416	38	9	10	41	1.72
10972989--10975563	647	4.0	644	88	2	3627	38	14	15	32	1.87
10977497--10977564	32	2.1	32	94	0	118	39	7	22	30	1.81
10979679--10979721	13	3.6	12	87	9	61	76	0	20	2	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10996455--10996599	70	2.1	70	82	2	175	28	14	15	42	1.86
10997102--10997324	78	2.9	78	93	0	367	34	9	13	42	1.77
10997440--10997549	45	2.4	45	77	10	116	35	6	13	44	1.69
10997823--10998023	17	12.2	17	69	10	78	33	12	10	42	1.78
10997830--10997860	16	1.9	16	93	0	53	32	12	9	45	1.75
10997874--10997938	34	1.9	34	90	0	103	35	7	12	44	1.71
10997926--10998029	51	2.0	51	81	3	120	34	14	10	40	1.80
10997960--10998059	17	5.9	17	71	4	67	39	14	10	37	1.79
10998093--10998204	54	2.1	55	83	5	138	32	14	11	41	1.81
10998082--10998190	18	6.0	18	74	14	80	32	15	11	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129