genome.fa.s24.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  73  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11537820--11537878	18	3.2	17	85	9	64	44	0	0	55	0.99
11537779--11537873	21	4.4	21	67	14	59	46	2	0	51	1.12
11537910--11537970	28	2.2	28	82	5	70	36	4	1	57	1.30
11538009--11538054	22	2.0	23	84	12	60	58	4	0	36	1.18
11537983--11538056	22	3.4	20	70	23	51	54	4	0	41	1.19
11538508--11538541	3	11.3	3	100	0	68	35	0	0	64	0.94
11546578--11546640	9	6.8	9	74	18	58	14	12	0	73	1.11
11546599--11546640	20	2.0	21	90	4	68	11	11	0	76	1.03
11550962--11551007	24	1.9	24	100	0	92	36	30	15	17	1.91
11551707--11551744	20	1.9	20	94	0	67	28	15	7	47	1.74
11557498--11557548	23	2.3	23	75	3	59	23	5	15	54	1.63
11558139--11558197	21	2.8	21	84	10	84	0	50	0	49	1.00
11567819--11567866	25	1.9	25	82	0	60	27	2	2	68	1.11
11568040--11568070	15	2.1	15	93	0	53	54	0	0	45	0.99
11568785--11568818	16	2.1	16	88	0	50	26	0	23	50	1.50
11569523--11569586	33	2.0	32	90	3	101	45	1	1	51	1.20
11569626--11569685	30	1.9	33	83	10	81	45	0	0	55	0.99
11569678--11569732	23	2.5	22	80	16	60	32	3	1	61	1.24
11574570--11574735	49	3.4	49	83	6	178	32	9	15	43	1.77
11575272--11575317	24	2.0	24	86	4	67	19	4	13	63	1.46
11575710--11575769	12	5.0	11	75	20	50	16	1	0	81	0.77
11575711--11575770	26	2.3	26	83	8	70	18	1	0	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11575716--11575760	10	4.5	10	78	10	56	15	0	0	84	0.62
11575717--11575774	9	6.3	9	78	11	55	18	0	0	81	0.70
11575716--11575774	16	3.6	16	82	8	66	18	0	0	81	0.69
11575857--11575895	11	3.5	11	80	13	53	30	0	5	64	1.15
11575901--11575942	13	3.2	13	79	0	57	28	7	7	57	1.52
11584177--11584228	21	2.5	21	90	6	79	50	0	0	50	1.00
11584177--11584228	22	2.5	22	93	6	90	50	0	0	50	1.00
11584195--11584264	30	2.3	30	77	2	77	58	1	0	40	1.07
11586086--11586142	2	29.5	2	77	13	57	45	3	3	47	1.37
11586082--11586147	33	1.9	35	87	6	100	40	3	7	48	1.47
11586846--11586897	3	17.3	3	100	0	104	67	0	0	32	0.91
11587929--11587962	13	2.5	14	80	9	52	47	0	0	52	1.00
11588971--11589036	26	2.5	27	85	2	89	46	12	3	37	1.56
11589157--11589186	2	15.0	2	100	0	60	50	0	0	50	1.00
11591156--11591187	16	2.0	16	93	0	55	81	3	0	15	0.82
11592582--11592616	17	1.9	19	88	11	56	48	5	11	34	1.63
11595907--11595949	21	2.1	20	91	4	68	60	2	0	37	1.10
11597597--11597697	52	1.9	52	82	6	123	44	3	19	31	1.69
11599026--11599098	29	2.4	30	80	11	87	46	1	6	45	1.38
11605442--11605536	19	5.1	19	71	17	74	55	0	1	43	1.06
11605449--11605538	27	3.4	27	68	15	71	57	0	1	41	1.06
11607169--11607221	19	2.9	19	78	13	58	54	0	1	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11608501--11608530	2	15.0	2	100	0	60	0	0	50	50	1.00
11609857--11609888	17	1.9	16	93	6	55	53	0	0	46	1.00
11609857--11609888	8	3.9	8	92	8	55	53	0	0	46	1.00
11615633--11615947	152	2.1	154	91	2	510	40	15	11	32	1.83
11617061--11617332	137	2.0	137	91	1	447	19	16	10	53	1.71
11621559--11621603	21	2.1	21	87	0	63	68	2	0	28	1.01
11622036--11622087	26	2.0	26	88	3	77	1	1	23	73	1.04
11631110--11631136	14	1.9	14	100	0	54	33	0	7	59	1.25
11631564--11631601	14	2.9	13	88	7	51	57	7	2	31	1.41
11636079--11636227	30	5.0	30	80	3	158	17	2	30	49	1.58
11636133--11636179	14	3.2	14	77	11	58	10	0	29	59	1.31
11636605--11636631	3	9.0	3	100	0	54	33	0	0	66	0.92
11638086--11638125	15	2.8	13	82	17	53	0	2	10	87	0.63
11638067--11638124	11	5.1	11	81	8	62	1	6	6	84	0.84
11643628--11643665	15	2.6	15	83	4	51	73	7	0	18	1.06
11643745--11643805	30	2.0	31	96	3	115	39	18	13	29	1.88
11644466--11644543	38	2.1	37	90	4	122	57	7	6	28	1.51
11648633--11648670	20	1.9	20	88	0	58	63	0	7	28	1.23
11648710--11648744	12	2.9	12	91	0	52	85	0	5	8	0.73
11653165--11653575	144	2.9	143	80	2	423	31	15	12	39	1.85
11667994--11668075	38	2.2	38	84	4	105	31	13	19	35	1.90
11667905--11668129	89	2.5	89	84	9	296	34	15	15	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11668031--11668279	50	5.0	50	79	8	272	36	15	15	33	1.89
11668031--11668279	98	2.5	102	82	5	319	36	15	15	33	1.89
11668521--11668564	22	2.0	21	83	12	54	22	9	25	43	1.82
11668379--11668678	146	2.0	147	84	1	388	30	14	15	39	1.87
11668891--11669019	56	2.4	54	83	6	147	37	13	10	37	1.81
11669040--11669173	68	2.0	68	95	0	241	35	12	18	33	1.89
11669251--11669294	14	3.1	14	80	6	54	81	6	11	0	0.86
11669801--11670317	145	3.6	145	81	5	505	32	13	11	42	1.80
11674509--11674596	45	2.0	45	97	0	167	30	5	21	42	1.76
11682468--11682513	22	2.0	22	87	4	65	71	0	2	26	0.97
11684012--11684049	18	2.2	18	85	4	51	42	10	13	34	1.78
11684021--11684057	18	2.1	18	89	0	56	45	10	8	35	1.69
11684219--11684292	18	4.2	18	70	13	55	41	10	14	32	1.81
11684490--11684586	47	2.1	46	82	3	115	46	15	9	28	1.77
11684513--11684563	25	2.0	25	81	7	59	49	13	5	31	1.66
11684536--11684621	22	4.0	21	67	14	59	48	11	6	32	1.66
11686102--11686174	7	9.7	7	79	16	76	2	16	0	80	0.82
11686103--11686185	23	3.7	23	73	16	84	4	18	0	77	0.95
11686117--11686185	16	4.4	14	81	17	59	4	18	0	76	0.94
11690845--11690902	28	2.1	28	100	0	116	13	10	17	58	1.62
11696232--11696353	46	2.6	48	75	13	128	53	17	9	20	1.70
11696430--11696509	25	3.2	24	76	15	65	31	5	30	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11696735--11696784	26	1.9	26	88	8	75	20	6	36	38	1.77
11697353--11697392	19	2.1	19	90	0	62	62	20	7	10	1.50
11699228--11699316	24	3.8	24	73	5	83	47	13	7	31	1.71
11699270--11699437	90	1.9	91	81	5	207	39	16	7	36	1.77
11699267--11699439	46	3.8	46	76	7	165	39	16	7	36	1.77
11700749--11700809	16	3.6	16	81	16	70	3	14	0	81	0.80
11700761--11700812	21	2.5	20	84	3	68	1	15	0	82	0.75
11700749--11700817	8	8.2	8	73	24	54	2	15	0	81	0.81
11700745--11700810	6	10.5	6	75	15	62	3	15	0	81	0.80
11700749--11700818	20	3.6	19	80	12	72	2	17	0	80	0.84
11710832--11710952	46	2.6	48	75	12	126	52	17	9	20	1.71
11711196--11711241	18	2.5	18	85	3	56	19	0	36	43	1.51
11711334--11711383	26	1.9	26	88	8	75	20	6	36	38	1.77
11714962--11714989	7	4.0	7	100	0	56	14	0	0	85	0.59
11719434--11719476	16	2.6	17	78	7	54	46	0	0	53	1.00
11719940--11720002	31	2.0	32	81	9	76	55	3	1	39	1.25
11721699--11721755	29	2.0	29	89	0	87	38	21	7	33	1.80
11724931--11724980	24	2.1	24	92	0	82	22	26	8	44	1.80
11729258--11729694	7	66.0	6	66	18	87	22	2	29	45	1.63
11729323--11729397	33	2.3	33	82	13	93	20	1	33	45	1.59
11729258--11729694	13	33.0	13	71	11	133	22	2	29	45	1.63
11729355--11729698	20	17.1	20	74	8	148	22	1	28	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11729338--11729589	119	2.1	119	89	0	378	23	1	28	46	1.62
11729374--11729516	73	2.0	73	81	5	173	21	0	29	48	1.55
11729447--11729554	46	2.3	47	81	7	132	24	0	27	47	1.58
11729355--11729698	7	51.4	7	68	10	119	22	1	28	46	1.62
11731003--11731309	143	2.1	143	79	4	307	40	14	13	31	1.85
11736370--11736405	18	2.0	18	88	0	54	22	16	16	44	1.86
11736814--11736889	22	3.5	22	71	7	64	35	26	13	25	1.92
11737322--11737393	28	2.6	28	76	10	76	19	5	4	70	1.23
11738173--11738211	20	1.9	21	89	5	62	56	0	28	15	1.40
11738702--11738910	94	2.2	95	82	7	239	42	12	7	37	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129