Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  114  of  129  ( 15374 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19163081--19163105
13
1.9
13
100
0
50
52
0
0
48
1.00
19163041--19163109
31
2.3
30
85
12
88
53
0
2
43
1.15
19167419--19167460
20
2.1
20
82
8
50
80
4
2
11
0.95
19167563--19167640
29
2.5
31
81
12
97
56
1
0
42
1.07
19167618--19167660
12
3.6
12
81
9
52
65
0
0
34
0.93
19171047--19171156
46
2.4
45
90
3
166
23
22
20
33
1.97
19178669--19178793
6
20.7
6
73
17
73
17
6
0
76
1.00
19178678--19178763
28
2.8
31
81
10
97
18
6
0
74
1.04
19178679--19178794
11
10.7
11
71
18
66
18
6
0
74
1.04
19178701--19178842
70
2.1
70
81
15
163
21
6
1
70
1.17
19178933--19178965
4
8.2
4
87
12
50
21
0
3
75
0.93
19178915--19178965
12
4.5
11
80
11
59
21
1
1
74
1.02
19179770--19179868
16
6.1
15
71
16
56
15
7
1
76
1.04
19179785--19179868
5
16.8
5
73
15
50
13
7
1
78
1.01
19179785--19179868
35
2.4
33
81
16
91
13
7
1
78
1.01
19179864--19180107
60
4.0
60
86
5
303
45
6
13
34
1.68
19179874--19180107
122
1.9
121
86
4
328
47
5
14
33
1.66
19180063--19180130
34
2.0
35
91
2
111
42
2
22
32
1.68
19183555--19183585
7
4.4
7
95
0
53
90
0
9
0
0.46
19185225--19185727
41
12.1
40
88
7
620
23
16
22
36
1.94
19185225--19185727
82
6.1
81
89
3
686
23
16
22
36
1.94
19185227--19185715
166
3.0
166
85
5
670
23
16
22
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19185898--19185985
6
14.7
6
72
17
58
15
5
1
77
1.02
19185897--19185952
26
2.2
25
87
6
85
12
3
1
82
0.88
19185899--19186024
11
11.5
11
69
12
80
19
5
0
74
1.06
19185899--19186023
17
6.9
17
71
17
74
18
5
0
75
1.05
19186145--19186196
22
2.4
22
84
12
63
19
1
3
75
1.06
19186977--19187079
4
25.0
4
72
20
54
20
3
3
71
1.17
19187030--19187082
15
3.4
15
80
14
63
15
5
0
79
0.91
19186977--19187083
16
6.5
16
69
18
67
19
3
3
72
1.15
19187030--19187113
32
2.6
31
83
12
98
13
7
1
78
1.01
19187110--19187412
119
2.5
118
88
8
427
46
6
12
34
1.68
19187110--19187412
60
5.1
57
88
7
401
46
6
12
34
1.68
19188411--19188527
55
2.1
57
85
6
159
35
10
6
47
1.64
19189388--19189445
11
5.2
11
74
12
55
62
1
5
31
1.27
19189449--19189517
24
2.9
24
77
10
79
56
1
4
37
1.28
19189388--19189517
48
2.8
47
81
10
142
58
1
5
34
1.30
19189765--19189945
44
4.2
44
76
6
181
43
20
13
22
1.87
19189781--19189974
44
4.5
44
75
7
137
43
19
13
22
1.86
19198031--19198079
21
2.3
22
96
3
91
8
12
8
71
1.31
19201012--19201208
55
3.6
54
84
4
270
36
12
8
43
1.73
19201157--19201297
68
2.1
68
87
2
203
36
8
4
50
1.55
19202153--19202267
48
2.4
47
84
7
144
57
1
6
33
1.36
19202159--19202268
24
4.6
24
75
13
109
56
1
7
34
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19202289--19202337
4
12.5
4
83
12
66
73
2
2
22
1.04
19202229--19202324
23
4.2
22
75
16
79
64
2
2
31
1.16
19207112--19207208
48
2.0
48
97
0
185
38
6
21
34
1.79
19209338--19210019
341
2.0
342
92
0
1125
31
14
14
39
1.87
19214562--19214604
17
2.7
16
89
7
61
67
2
4
25
1.22
19214570--19214671
52
2.0
52
92
0
168
51
4
12
30
1.61
19215436--19215540
52
2.0
52
87
3
149
40
6
21
30
1.79
19215442--19215694
134
1.9
134
90
3
402
43
5
19
32
1.74
19222766--19222790
2
12.5
2
100
0
50
52
0
0
48
1.00
19224030--19224076
22
2.2
22
96
3
87
51
0
0
48
1.00
19224071--19224126
18
3.3
18
80
12
64
55
0
0
44
0.99
19230746--19230821
34
2.2
35
83
6
102
46
6
5
42
1.52
19231949--19231990
2
21.5
2
95
4
77
50
0
0
50
1.00
19232209--19232234
2
13.0
2
100
0
52
50
0
0
50
1.00
19246192--19246303
30
3.8
30
80
6
106
36
5
0
57
1.28
19246331--19246365
18
2.0
17
88
5
52
37
0
5
57
1.23
19246344--19246415
29
2.4
30
82
13
87
50
1
5
43
1.34
19246344--19246428
29
2.9
28
81
8
73
55
2
4
37
1.34
19246579--19246615
2
19.0
2
88
5
58
48
0
0
51
1.00
19256660--19256759
52
1.9
52
89
0
155
58
2
12
28
1.45
19263048--19263110
31
2.0
31
96
0
117
31
23
6
38
1.80
19270110--19270155
22
2.1
22
84
11
60
30
4
2
63
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19272655--19272701
7
6.9
7
76
13
53
17
8
0
74
1.05
19277315--19277353
16
2.4
17
83
12
55
28
0
5
66
1.12
19277422--19277452
10
3.0
10
95
4
53
0
9
0
90
0.46
19277422--19277449
11
2.5
11
100
0
56
0
7
0
92
0.37
19278450--19278527
17
4.6
16
75
16
68
14
5
2
78
1.03
19278450--19278517
22
3.1
21
74
19
59
13
5
2
77
1.06
19278544--19278987
57
7.7
58
75
9
385
44
5
12
37
1.65
19278545--19278988
114
3.9
114
83
6
538
44
5
12
38
1.65
19287613--19287651
19
1.9
19
90
10
60
82
0
5
12
0.83
19288643--19288918
41
6.7
41
89
0
401
24
15
22
38
1.92
19289194--19289237
6
7.2
6
87
10
54
29
0
2
68
1.02
19289191--19289231
7
6.1
7
94
5
68
29
0
0
70
0.87
19289194--19289242
13
3.8
13
86
7
64
28
0
2
69
1.00
19289191--19289242
20
2.7
19
88
8
70
28
0
1
69
0.99
19289253--19289293
15
2.6
15
88
7
55
26
2
2
68
1.15
19289311--19289338
10
2.8
10
100
0
56
0
7
0
92
0.37
19289370--19289410
12
3.6
12
78
21
52
24
7
7
60
1.48
19289424--19289469
23
2.0
23
82
0
56
21
2
2
73
1.04
19289435--19289468
9
3.6
9
88
11
50
17
0
0
82
0.67
19290264--19290306
11
4.1
10
85
8
59
11
2
2
83
0.83
19290265--19290348
37
2.3
36
84
8
109
14
3
2
79
0.96
19290345--19290751
57
7.1
56
71
11
216
44
7
10
37
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19290345--19290635
56
5.1
54
73
13
208
45
6
10
37
1.64
19290365--19290749
115
3.3
115
81
7
415
44
7
11
36
1.68
19290366--19290753
172
2.2
173
85
4
489
44
7
11
36
1.69
19291312--19291342
6
5.0
6
96
4
53
80
0
3
16
0.83
19292447--19292536
26
3.6
26
67
17
73
36
6
7
48
1.58
19292448--19292546
48
2.1
48
86
1
137
35
6
11
47
1.64
19294426--19294479
20
2.6
21
80
8
67
29
9
11
50
1.69
19294430--19294568
58
2.4
58
80
3
165
33
6
11
48
1.65
19294426--19294537
20
5.7
20
68
13
61
34
7
9
48
1.64
19294530--19294575
22
2.1
22
83
0
56
30
6
13
50
1.66
19294504--19294612
38
3.0
36
84
9
139
32
7
11
48
1.67
19294504--19294612
36
3.0
36
80
7
130
32
7
11
48
1.67
19294888--19294928
19
2.2
19
86
0
55
24
9
9
56
1.62
19294952--19295024
22
3.3
22
84
0
101
38
8
8
45
1.64
19295471--19295548
16
4.6
16
73
14
59
50
0
1
48
1.09
19295477--19295566
18
5.2
17
78
13
78
52
0
1
46
1.07
19295528--19295566
19
2.1
18
90
4
60
53
0
2
43
1.14
19295598--19295626
15
1.9
15
100
0
58
34
3
0
62
1.12
19295617--19295661
22
2.0
22
83
8
56
33
2
6
57
1.37
19295599--19295678
18
4.6
17
73
15
67
36
5
3
55
1.40
19295863--19295889
14
1.9
14
100
0
54
44
3
0
51
1.19
19295863--19295896
14
2.3
15
90
10
52
47
5
2
44
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19297814--19297857
21
2.2
20
83
4
52
29
9
15
45
1.77
19297817--19297954
58
2.4
57
80
8
149
32
7
12
47
1.70
19297916--19297961
22
2.1
22
83
0
56
30
6
13
50
1.66
19297890--19298010
36
3.3
36
81
10
138
32
8
13
46
1.72
19298048--19298117
19
3.7
19
71
7
61
25
11
12
50
1.74
19298048--19298123
38
2.0
38
81
0
89
26
11
13
48
1.76
19298274--19298314
19
2.2
19
86
0
55
24
9
9
56
1.62
19298338--19298407
22
3.2
22
84
8
97
38
8
10
42
1.69
19298863--19298952
18
5.2
17
75
13
69
52
0
2
45
1.13
19298914--19298952
19
2.1
18
90
4
60
53
0
2
43
1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129