genome.fa.s24.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  26  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3577994--3578046	26	2.0	26	92	0	88	30	24	18	26	1.98
3578897--3578949	27	2.0	27	92	7	90	26	24	18	30	1.98
3580641--3580719	26	3.0	26	100	0	158	26	26	20	26	1.99
3581570--3581622	26	2.0	26	88	0	79	28	22	18	30	1.98
3583321--3583373	26	2.0	26	96	0	97	28	26	18	26	1.98
3584250--3586432	717	3.1	712	89	2	3310	26	24	23	26	2.00
3586546--3586598	26	2.0	26	96	0	97	30	24	16	28	1.97
3587448--3587500	26	2.0	26	92	0	88	28	22	20	28	1.99
3585685--3591844	902	6.9	901	87	2	8276	25	24	24	25	2.00
3589251--3589303	26	2.0	26	92	0	88	26	26	18	28	1.98
3591078--3593285	717	3.1	717	89	2	3322	27	24	22	26	2.00
3592922--3595040	857	2.4	856	85	4	2652	26	24	23	25	2.00
3596744--3596796	26	2.0	26	88	0	79	28	24	18	28	1.98
3594985--3597222	883	2.5	865	84	5	2751	26	24	23	26	2.00
3597230--3597282	26	2.0	26	92	0	88	22	22	20	33	1.97
3598129--3598181	26	2.0	26	89	7	81	24	24	20	30	1.99
3599021--3599071	26	2.0	26	92	0	84	21	27	23	27	1.99
3597230--3599816	903	2.9	898	85	3	3600	26	24	23	26	2.00
3600605--3600657	26	2.0	26	100	0	106	26	22	20	30	1.98
3603965--3604014	26	1.9	26	91	0	82	24	28	18	30	1.97
3604863--3604912	26	1.9	26	91	0	82	24	28	18	30	1.97
3603090--3624149	896	23.9	898	84	6	24085	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3605765--3605817	26	2.0	26	92	0	88	24	20	22	32	1.98
3606620--3606672	26	2.0	26	96	0	97	28	26	18	26	1.98
3607517--3607567	26	2.0	26	96	0	93	31	27	13	27	1.94
3609315--3609365	26	2.0	26	96	0	93	23	27	21	27	1.99
3610176--3610228	26	2.0	26	96	0	97	26	20	20	32	1.98
3613685--3613737	26	2.0	26	89	7	81	28	24	18	28	1.98
3614583--3614635	26	2.0	26	88	0	79	24	22	24	28	2.00
3615475--3615527	26	2.0	26	88	0	79	24	22	24	28	2.00
3617553--3617596	19	2.3	19	100	0	88	29	18	22	29	1.97
3619020--3619072	26	2.0	26	92	0	88	24	24	22	28	2.00
3623354--3623406	26	2.0	26	88	0	79	28	26	18	26	1.98
3625341--3625464	59	2.1	59	81	1	160	33	11	8	45	1.71
3625242--3625465	122	1.8	121	86	5	326	33	12	8	45	1.72
3625502--3625564	16	3.9	15	76	12	63	77	1	6	14	1.03
3625497--3625582	6	14.3	6	73	17	54	76	1	6	15	1.05
3625528--3625581	27	2.0	28	89	10	85	77	1	7	12	1.05
3625506--3625656	11	13.5	11	71	16	73	74	3	4	17	1.13
3625605--3625654	4	12.5	4	78	16	50	78	2	2	18	0.95
3625505--3625657	12	12.5	12	68	19	61	74	3	4	17	1.12
3626548--3626636	4	23.0	4	76	17	55	66	1	2	30	1.11
3626569--3626630	22	2.8	22	77	2	61	69	1	1	27	1.07
3626649--3626677	11	2.5	12	94	5	51	79	3	0	17	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3626934--3626979	10	4.8	10	84	15	62	2	6	4	86	0.75
3626934--3626980	9	4.8	10	76	12	53	2	6	4	87	0.74
3626934--3626983	18	2.7	18	93	6	82	2	6	4	88	0.70
3626934--3626983	19	2.6	19	87	9	75	2	6	4	88	0.70
3626956--3627189	101	2.2	103	89	5	355	26	14	12	46	1.80
3627203--3627516	41	7.5	42	86	6	417	37	23	16	22	1.94
3627203--3627516	83	3.8	83	86	4	420	37	23	16	22	1.94
3627456--3627655	70	2.9	69	91	3	312	34	28	15	22	1.94
3627567--3627620	28	1.9	28	92	0	90	29	35	12	22	1.91
3627595--3627679	41	2.1	41	93	0	143	32	24	16	25	1.96
3627877--3628012	43	3.2	42	74	14	125	33	16	13	36	1.87
3628193--3628250	22	2.7	22	81	10	66	34	17	8	39	1.80
3630688--3630740	26	2.0	26	92	0	88	28	18	24	28	1.98
3631591--3631643	26	2.0	26	96	0	97	26	20	24	28	1.99
3629814--3636990	867	8.0	901	83	6	7881	25	23	24	26	2.00
3633360--3633412	26	2.0	26	88	0	79	28	20	24	26	1.99
3632484--3636990	899	5.0	891	80	8	4676	25	23	24	26	2.00
3635163--3635234	26	2.8	26	91	0	117	27	18	25	29	1.98
3629814--3636990	903	8.0	893	82	7	7137	25	23	24	26	2.00
3638677--3638729	26	2.0	26	96	0	97	28	20	24	26	1.99
3639553--3639605	26	2.0	26	92	0	88	26	20	26	26	1.99
3641330--3641382	26	2.0	26	89	7	81	28	18	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3642232--3642284	26	2.0	26	88	0	79	24	22	24	28	2.00
3637040--3643909	903	7.7	896	85	4	8511	25	24	24	25	2.00
3643126--3643178	26	2.0	26	96	0	97	26	20	24	28	1.99
3643378--3644467	559	2.0	558	91	1	1781	27	21	22	28	1.99
3644586--3644638	26	2.0	26	88	0	79	28	15	28	28	1.96
3646359--3646410	26	2.0	26	84	0	68	32	15	25	26	1.95
3646200--3646570	185	2.0	185	83	3	469	25	26	27	19	1.99
3647263--3647314	26	2.0	26	96	0	95	25	19	28	26	1.98
3648160--3648212	26	2.0	26	92	0	88	26	16	24	32	1.97
3646356--3649952	897	4.0	897	84	5	4486	25	23	25	25	2.00
3650086--3650137	26	2.0	26	88	0	77	30	15	26	26	1.96
3649927--3650297	185	2.0	185	87	2	530	22	27	29	20	1.98
3651760--3651816	26	2.2	26	96	0	105	28	19	24	28	1.98
3653273--3653325	26	2.0	26	92	0	88	30	20	20	28	1.98
3654913--3654963	26	2.0	26	96	0	93	27	19	23	29	1.98
3653458--3655039	734	2.1	733	87	4	2215	25	23	25	25	2.00
3655817--3655868	26	2.0	26	96	0	95	26	17	26	28	1.97
3654197--3664715	904	11.9	900	83	6	12571	25	23	24	26	2.00
3656721--3656773	26	2.0	26	96	0	97	26	22	26	24	2.00
3659328--3659380	26	2.0	26	96	0	97	26	22	24	26	2.00
3660228--3660279	26	2.0	26	96	0	95	26	17	26	28	1.97
3658063--3664715	901	7.5	899	84	5	8122	25	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3661132--3661184	26	2.0	26	100	0	106	26	20	26	26	1.99
3662900--3662952	26	2.0	26	88	0	79	24	16	28	30	1.97
3664663--3664741	26	3.0	26	96	0	140	27	20	24	27	1.99
3664715--3665063	159	2.2	159	80	3	371	22	26	28	22	1.99
3665744--3665796	26	2.0	26	85	0	70	30	20	22	26	1.98
3666633--3666684	25	2.0	26	88	3	79	26	21	23	28	1.99
3664874--3667556	896	3.0	893	85	3	3637	25	24	24	25	2.00
3668881--3668933	26	2.0	26	85	0	70	28	20	22	28	1.99
3668907--3669271	159	2.3	159	83	0	435	22	27	28	21	1.99
3670277--3670329	26	2.0	26	92	0	88	30	20	24	24	1.99
3671764--3671814	26	2.0	26	92	0	84	33	25	13	27	1.94
3672657--3672707	26	2.0	26	96	0	93	23	27	21	27	1.99
3671542--3679330	895	8.8	893	84	5	9240	25	24	24	25	2.00
3674431--3674483	26	2.0	26	96	0	97	26	20	20	32	1.98
3671790--3679330	900	8.5	874	83	6	8642	25	24	24	25	2.00
3677938--3677990	26	2.0	26	85	7	72	30	24	16	28	1.97
3678838--3678890	26	2.0	26	92	0	88	24	24	22	28	2.00
3681668--3681720	26	2.0	26	92	0	88	26	22	22	28	1.99
3682374--3683765	734	1.9	735	88	1	2123	27	22	22	26	1.99
3683980--3684032	26	2.0	26	96	0	97	26	24	20	28	1.99
3683008--3688256	899	5.9	901	85	4	6698	26	24	24	25	2.00
3687551--3687603	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3688633--3688662	14	2.1	15	93	6	53	26	23	13	36	1.92
3689457--3689734	59	4.7	59	80	8	316	33	12	8	45	1.72
3689457--3689733	123	2.3	121	82	7	338	33	12	8	45	1.71
3689770--3689831	16	3.9	15	76	16	63	79	1	4	14	0.98
3689765--3689849	6	14.3	6	75	15	61	77	1	5	15	1.01
3689768--3689922	22	7.1	21	69	21	88	74	3	3	18	1.10
3689774--3689927	11	13.9	11	71	17	74	75	3	3	17	1.09
3689790--3689851	26	2.4	26	79	15	74	79	1	4	14	0.98
3689872--3689921	4	12.5	4	78	16	50	78	2	2	18	0.95
3689773--3689928	12	12.9	12	69	18	69	75	3	3	17	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129