genome.fa.s24.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  87  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13916123--13916361	41	5.8	41	89	3	356	36	23	17	21	1.95
13916123--13916346	123	1.8	123	96	0	412	36	23	18	21	1.95
13916346--13916376	15	2.1	15	93	0	53	38	25	16	19	1.92
13916305--13916417	56	2.0	56	93	3	192	38	23	17	21	1.94
13916367--13916448	41	2.0	41	95	0	146	40	18	18	23	1.91
13916264--13916443	97	1.9	96	89	4	281	38	22	16	22	1.93
13921529--13921557	6	4.8	6	100	0	58	68	13	0	17	1.20
13921592--13921895	61	5.0	62	82	7	370	31	13	6	48	1.68
13921592--13921895	123	2.5	121	86	4	414	31	13	6	48	1.68
13922979--13923113	8	17.6	8	69	27	57	63	2	1	31	1.18
13922980--13923126	56	2.6	57	74	15	135	64	3	1	30	1.18
13924382--13924489	44	2.4	44	85	1	135	41	21	15	21	1.90
13924551--13924637	45	2.0	45	90	2	140	44	19	13	21	1.85
13924885--13924925	20	2.0	20	85	0	55	29	14	17	39	1.89
13924855--13925049	106	1.8	106	81	4	239	32	17	14	34	1.90
13926362--13926443	9	9.6	8	73	22	53	9	14	1	74	1.13
13926379--13926415	17	2.2	17	90	0	56	8	13	0	78	0.96
13926369--13926430	27	2.4	27	89	7	94	8	9	1	80	0.97
13926369--13926421	10	5.5	10	82	15	67	7	11	1	79	1.01
13933802--13933924	3	42.7	3	77	16	111	69	1	1	26	1.06
13933802--13933924	26	4.4	28	75	22	107	69	1	1	26	1.06
13935993--13936027	2	17.5	2	93	0	61	51	0	2	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13937004--13937041	4	9.2	4	94	5	67	23	0	0	76	0.79
13937357--13937389	15	2.3	15	89	5	50	45	0	0	54	0.99
13937698--13937727	2	15.0	2	100	0	60	50	0	0	50	1.00
13938213--13938238	2	13.0	2	100	0	52	50	0	0	50	1.00
13943115--13943157	21	2.0	21	95	0	77	30	0	11	58	1.34
13943766--13943813	24	1.9	24	91	8	78	35	0	0	64	0.94
13943804--13943855	21	2.7	19	83	13	70	50	0	0	50	1.00
13943807--13943852	21	2.2	21	92	3	76	47	0	0	52	1.00
13950676--13950707	4	7.8	4	93	6	55	21	0	3	75	0.95
13962699--13962760	17	3.8	16	79	14	72	67	1	1	29	1.09
13970010--13970109	18	5.7	18	71	11	73	29	5	32	34	1.79
13970009--13970110	33	3.0	34	78	7	125	29	4	31	34	1.79
13970080--13970135	18	2.9	18	75	14	58	30	3	33	32	1.75
13970478--13970520	6	7.2	6	91	0	68	30	48	0	20	1.50
13973578--13973640	27	2.4	25	80	10	65	57	9	0	33	1.31
13973923--13973974	27	2.0	28	88	11	83	38	9	1	50	1.46
13974196--13974233	20	2.0	20	89	5	60	60	5	0	34	1.19
13974461--13974544	38	2.2	38	82	6	98	23	60	1	14	1.41
13974490--13974591	48	2.1	48	89	1	152	25	60	2	10	1.44
13974575--13974614	18	2.1	20	86	9	57	22	62	0	15	1.32
13975102--13975139	18	2.0	20	90	10	62	15	7	15	60	1.57
13976234--13976340	34	3.1	34	86	0	142	48	14	21	14	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13977702--13977750	25	1.9	26	87	4	73	44	4	10	40	1.57
13985702--13985741	13	3.0	13	88	3	53	35	0	30	35	1.58
13985708--13985743	13	2.8	13	91	0	54	25	0	30	44	1.54
13986447--13986507	28	2.2	28	84	0	77	21	26	19	32	1.97
13987271--13987298	8	3.5	8	100	0	56	0	0	10	89	0.49
13987338--13987379	3	14.0	3	100	0	84	33	0	0	66	0.92
13989595--13989636	12	3.6	12	78	15	52	33	0	0	66	0.92
13989578--13989638	31	1.9	32	87	12	90	34	0	0	65	0.93
13989580--13989638	23	2.6	23	86	10	77	33	0	0	66	0.92
13991593--13992254	138	5.0	134	79	9	795	29	22	14	33	1.94
13999175--13999238	20	3.0	22	78	19	73	56	7	6	29	1.52
13999176--13999226	23	2.2	22	80	13	59	58	7	5	27	1.49
13999235--13999326	27	3.2	28	73	21	91	59	6	4	29	1.42
13999214--13999266	7	7.3	7	77	8	52	62	5	3	28	1.35
13999204--13999320	33	3.7	32	77	18	113	57	7	5	29	1.49
13999195--13999326	60	2.2	61	85	10	175	59	6	4	29	1.44
14007106--14007157	21	2.4	22	75	21	56	59	0	1	38	1.08
14013980--14014010	14	2.2	14	100	0	62	54	9	6	29	1.57
14017409--14017759	177	2.0	176	92	1	578	36	19	7	36	1.81
14018381--14018446	16	4.1	16	73	11	55	48	1	3	46	1.26
14018395--14018468	32	2.3	32	80	11	82	51	2	1	44	1.24
14018511--14018641	60	2.1	61	86	5	176	50	8	5	35	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14018887--14018933	15	3.2	15	79	11	53	63	0	2	34	1.06
14018887--14018919	14	2.3	15	89	5	50	66	0	0	33	0.92
14035739--14035864	52	2.4	52	88	3	182	38	8	24	27	1.85
14035991--14036040	25	2.0	25	100	0	100	16	4	40	40	1.67
14041583--14041618	8	4.5	8	96	0	63	36	50	2	11	1.53
14047139--14047204	27	2.6	25	80	9	62	53	1	1	43	1.19
14047740--14047771	13	2.4	13	94	5	55	28	28	21	21	1.99
14050351--14050402	24	2.0	24	85	10	68	48	0	0	51	1.00
14050388--14050434	14	3.4	14	77	11	53	57	0	0	42	0.98
14050625--14050661	19	1.9	19	94	0	65	70	0	0	29	0.88
14051217--14051267	9	5.3	9	78	17	50	37	1	0	60	1.08
14051218--14051265	10	4.6	10	78	17	53	37	2	0	60	1.09
14051217--14051265	20	2.3	21	89	6	73	36	2	0	61	1.08
14051594--14051674	25	3.3	25	81	13	105	37	1	2	59	1.19
14051732--14051784	18	2.8	19	83	8	65	47	0	0	52	1.00
14055584--14055626	2	21.5	2	95	0	59	51	6	0	41	1.29
14055917--14055965	22	2.2	22	78	7	55	46	4	2	46	1.33
14058720--14058764	21	2.1	22	83	4	56	37	4	0	57	1.19
14064524--14064561	18	2.1	18	85	9	51	26	2	2	68	1.16
14064691--14064731	20	2.2	19	91	8	66	43	2	0	53	1.13
14065831--14065883	19	2.8	19	82	2	63	45	3	0	50	1.19
14067202--14067270	35	2.0	35	97	2	131	56	2	5	34	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14067601--14067660	29	2.1	29	83	0	75	55	13	10	21	1.67
14067719--14067766	25	1.9	24	91	4	69	60	6	4	29	1.40
14068518--14068568	24	2.1	24	82	7	59	54	1	1	41	1.22
14068604--14068636	17	1.9	17	88	11	50	69	3	0	27	1.03
14069065--14069104	21	2.0	20	85	5	53	52	2	0	45	1.14
14069303--14069374	29	2.5	28	80	15	85	77	1	13	6	1.03
14069303--14069377	28	2.7	28	77	22	79	77	1	14	6	1.04
14069303--14069380	14	5.5	13	74	17	59	76	1	15	6	1.04
14069303--14069375	15	4.9	14	74	12	58	78	1	13	6	1.02
14069862--14069886	6	4.2	6	100	0	50	68	0	0	32	0.90
14084933--14084957	2	12.5	2	100	0	50	52	0	0	48	1.00
14084957--14084985	2	14.5	2	100	0	58	51	0	48	0	1.00
14087500--14087581	30	2.7	30	81	3	76	46	2	1	50	1.22
14087625--14087676	19	2.7	18	75	21	52	34	3	0	61	1.14
14087582--14087684	54	1.9	54	84	7	138	37	3	0	58	1.17
14088744--14088783	11	3.5	11	81	18	55	30	2	0	67	1.04
14094578--14094614	17	2.2	17	90	9	58	0	27	8	64	1.21
14094819--14094884	33	2.0	34	85	8	91	43	6	4	45	1.49
14099076--14099124	19	2.4	20	83	10	55	22	10	0	67	1.20
14099076--14099132	21	2.8	20	79	12	53	22	8	0	68	1.17
14118562--14118638	23	3.3	23	94	0	127	32	19	20	27	1.97
14120649--14120682	2	17.0	2	100	0	68	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14122526--14122613	29	3.0	28	75	9	86	38	6	5	48	1.53
14122537--14122621	30	2.9	30	79	8	102	41	8	4	45	1.55
14126315--14126345	15	2.1	15	100	0	62	32	0	54	12	1.38
14128489--14128525	12	3.2	12	88	11	51	32	0	0	67	0.91
14128504--14128547	18	2.6	17	89	10	72	34	0	0	65	0.93
14128508--14128586	22	3.3	26	81	13	82	43	0	0	56	0.99
14135525--14135556	12	2.8	12	95	4	57	25	0	0	75	0.81
14136535--14136605	28	2.5	29	78	15	69	47	2	2	46	1.31
14142651--14142713	31	2.0	31	100	0	126	22	23	12	41	1.88
14145936--14145991	24	2.4	23	82	8	60	73	0	8	17	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129