genome.fa.s24.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  70  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11005957--11006005	25	2.1	24	82	14	59	30	12	12	44	1.78
11013094--11013151	28	2.0	29	96	3	109	36	20	6	36	1.80
11014822--11014966	70	2.1	70	82	2	175	26	14	15	42	1.86
11015773--11015847	22	3.3	23	70	19	68	37	2	14	45	1.59
11016101--11016151	16	3.1	17	74	5	59	33	19	5	41	1.76
11016162--11016333	34	5.1	33	75	3	110	37	13	9	39	1.78
11016233--11016276	17	2.6	17	88	0	70	31	15	6	45	1.73
11016222--11016333	17	6.6	17	73	9	68	37	16	8	37	1.80
11016429--11016480	18	2.9	18	77	11	61	34	9	11	44	1.73
11016382--11016489	18	6.0	17	69	20	51	32	16	11	39	1.84
11016772--11017119	171	2.0	171	96	1	644	24	8	5	61	1.46
11017594--11017647	24	2.3	23	78	15	56	20	0	9	70	1.14
11019514--11019892	189	2.0	189	100	0	758	47	9	10	32	1.69
11030257--11030294	15	2.5	15	91	0	58	44	5	7	42	1.56
11031304--11031509	96	2.1	96	94	0	367	38	17	18	25	1.93
11033481--11033518	19	2.0	20	84	5	51	65	10	0	23	1.23
11033764--11033804	9	4.9	9	77	17	52	51	0	0	48	1.00
11033962--11034003	22	1.9	22	85	9	59	40	4	2	52	1.35
11034388--11034440	8	7.1	8	74	23	53	64	0	3	32	1.12
11034613--11034646	16	2.0	18	88	11	54	58	0	5	35	1.22
11036850--11036883	15	2.3	15	89	0	50	38	0	11	50	1.39
11038574--11038600	14	1.9	14	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11039091--11039141	20	2.4	22	78	15	54	1	19	7	70	1.21
11043766--11043807	22	1.9	22	85	0	57	2	14	9	73	1.18
11052159--11052190	15	2.1	15	94	0	55	46	3	6	43	1.44
11053198--11053406	96	2.1	97	92	4	350	38	17	18	25	1.92
11055395--11055432	19	2.0	20	84	5	51	65	10	0	23	1.23
11055856--11055897	22	1.9	22	85	9	59	40	4	2	52	1.35
11056096--11056147	28	2.0	27	85	11	72	53	0	1	44	1.11
11056287--11056330	21	2.1	21	95	0	79	65	0	2	31	1.05
11056531--11056568	19	2.0	20	85	15	53	60	5	10	23	1.50
11060990--11061040	20	2.4	22	78	15	54	1	19	7	70	1.21
11070297--11070395	40	2.5	40	88	4	148	17	12	14	56	1.67
11070679--11070718	10	4.0	10	90	0	62	27	0	25	47	1.52
11070678--11070717	20	2.0	20	95	0	71	25	0	27	47	1.52
11073734--11074049	160	2.0	160	96	0	578	27	7	19	45	1.78
11074828--11075187	184	2.0	184	92	1	605	26	12	19	41	1.87
11081164--11081203	21	1.9	21	84	0	53	50	5	22	22	1.68
11082962--11083114	7	22.0	7	72	6	78	22	4	30	42	1.74
11082992--11083123	21	6.3	21	80	1	122	19	5	33	41	1.74
11082992--11083123	7	19.0	7	76	1	95	19	5	33	41	1.74
11085218--11085244	3	9.0	3	100	0	54	66	0	0	33	0.92
11085543--11085671	66	2.0	66	87	0	186	40	13	27	17	1.88
11085545--11085687	66	2.2	66	84	0	178	43	13	25	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11085733--11086073	122	2.8	122	77	4	280	41	14	23	20	1.89
11087320--11087464	66	2.2	66	86	0	191	39	13	28	17	1.89
11087456--11087850	122	3.3	122	79	4	327	40	15	23	20	1.90
11088762--11088803	3	14.0	3	100	0	84	66	0	0	33	0.92
11089102--11089246	66	2.2	66	81	4	159	40	12	28	18	1.87
11089238--11089632	122	3.3	120	80	2	380	41	15	23	19	1.89
11090391--11090439	18	2.8	18	84	9	57	4	16	4	75	1.11
11090402--11090439	18	2.2	18	95	4	69	5	13	5	76	1.13
11094627--11094672	16	2.7	17	80	12	51	73	6	2	17	1.14
11095554--11095595	3	14.3	3	90	5	68	66	2	0	30	1.04
11095561--11095597	17	2.2	17	100	0	74	64	0	0	35	0.94
11095550--11095621	23	3.1	23	83	15	78	62	1	4	31	1.23
11105128--11105192	26	2.6	25	76	11	71	56	7	3	32	1.43
11105264--11105501	99	2.3	103	79	7	263	44	7	9	39	1.65
11105370--11105686	165	1.9	162	82	6	390	40	8	10	40	1.70
11111339--11111364	7	3.7	7	100	0	52	88	0	0	11	0.52
11117341--11117379	17	2.2	18	86	4	53	48	0	2	48	1.15
11121430--11121489	29	2.1	28	85	14	79	51	1	1	45	1.21
11122596--11122627	15	2.1	16	94	5	57	71	0	0	28	0.86
11123484--11123542	18	3.2	19	83	4	77	54	11	8	25	1.65
11123525--11123617	37	2.5	37	79	10	102	44	11	7	36	1.70
11123541--11123578	20	1.9	20	88	0	58	42	15	7	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11123647--11123738	23	4.0	23	77	5	87	48	14	5	31	1.66
11123647--11123758	23	4.7	24	72	8	77	50	12	6	31	1.65
11123834--11123904	22	3.1	22	78	10	72	42	15	9	32	1.80
11123834--11123945	46	2.4	46	82	2	127	40	15	10	33	1.82
11125079--11125130	18	2.9	18	75	11	52	11	17	0	71	1.15
11131690--11131780	29	3.1	29	75	7	94	15	3	32	48	1.61
11131661--11131726	22	3.0	23	82	8	75	15	1	31	51	1.52
11131690--11131786	30	3.3	30	76	4	99	15	3	36	45	1.62
11131668--11131826	8	21.4	8	67	19	51	16	3	33	45	1.65
11131706--11131822	59	2.0	59	91	3	191	17	4	34	44	1.68
11131715--11131826	30	3.8	30	78	4	129	16	4	35	42	1.69
11131769--11131869	46	2.2	47	87	8	145	16	5	36	40	1.73
11131710--11131933	106	2.1	106	84	9	289	18	5	33	42	1.74
11132380--11132436	24	2.3	25	76	11	64	77	1	1	19	0.95
11132381--11132441	19	3.2	18	77	13	61	77	1	3	18	0.99
11133831--11133889	3	19.3	3	96	3	109	66	0	0	33	0.92
11134130--11134172	12	3.5	12	84	6	59	62	16	2	18	1.43
11134119--11134172	12	4.3	13	79	9	58	59	22	1	16	1.47
11134139--11134190	12	4.2	12	80	4	50	59	11	3	25	1.49
11134119--11134172	25	2.2	25	89	0	81	59	22	1	16	1.47
11136425--11136473	19	2.6	19	80	0	53	16	6	28	48	1.69
11136496--11136563	19	3.6	19	78	4	57	20	8	26	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11138551--11138658	34	3.1	36	74	8	105	29	2	1	65	1.17
11140000--11140038	16	2.4	17	86	8	62	28	15	15	41	1.87
11143870--11144517	131	5.0	129	77	8	453	44	10	8	37	1.68
11144011--11144501	132	3.8	131	79	7	432	43	9	8	37	1.69
11147038--11147084	3	16.0	3	91	4	78	68	2	0	29	1.02
11147090--11147150	28	2.2	28	82	5	70	80	8	3	8	1.01
11147498--11147538	11	3.8	11	84	9	50	56	17	0	26	1.41
11148304--11148386	43	1.9	43	85	0	112	39	14	13	32	1.85
11148766--11148881	34	3.1	39	75	13	125	43	18	12	25	1.86
11153049--11153078	11	2.7	11	100	0	60	16	26	0	56	1.40
11158033--11158075	21	2.0	21	82	8	52	30	16	4	48	1.66
11160854--11160897	19	2.3	18	80	7	52	47	2	0	50	1.13
11161265--11161298	16	2.1	16	88	0	50	32	2	2	61	1.26
11161858--11161918	32	1.9	32	86	6	88	44	3	3	49	1.35
11162096--11162131	12	2.9	12	91	4	54	33	0	0	66	0.92
11165845--11165869	12	2.1	12	100	0	50	32	8	0	60	1.26
11167237--11167271	18	1.9	18	88	0	52	68	0	2	28	1.04
11171994--11172041	22	2.2	22	85	3	62	58	0	6	35	1.23
11172176--11172380	18	12.9	16	71	20	114	53	2	1	41	1.25
11172176--11172281	46	2.3	43	85	9	131	55	0	1	41	1.17
11172215--11172379	14	11.6	14	69	20	78	53	2	1	41	1.24
11172176--11172382	15	13.1	15	71	19	95	54	2	1	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11172171--11172410	99	2.5	95	77	9	247	55	2	1	40	1.23
11172339--11172412	12	7.0	10	73	19	53	60	2	0	36	1.11
11172443--11172553	17	7.1	15	74	16	84	50	0	0	49	1.00
11172440--11172571	31	4.2	31	82	13	128	50	0	0	49	1.00
11172473--11172582	32	3.5	31	83	10	134	48	0	0	51	1.00
11175936--11175996	33	1.9	32	86	6	88	77	6	0	16	0.98
11177035--11177061	3	9.0	3	100	0	54	33	0	0	66	0.92
11177255--11177327	23	3.2	22	83	9	76	31	17	21	28	1.97
11177313--11177496	88	2.1	88	86	0	251	37	15	22	23	1.93
11177475--11177518	22	2.0	22	90	0	70	27	18	27	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129