genome.fa.s24.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  30  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4058274--4058326	26	2.0	26	92	0	88	28	22	20	28	1.99
4061554--4061606	26	2.0	26	92	0	88	30	22	20	26	1.98
4062135--4062187	26	2.0	26	96	0	97	28	28	16	26	1.97
4062450--4063228	400	1.9	399	90	1	1238	34	20	17	27	1.95
4064127--4064179	26	2.0	26	92	0	88	28	24	18	28	1.98
4065018--4065074	26	2.2	26	96	0	105	31	22	19	26	1.98
4063285--4065458	894	2.4	895	87	2	3101	25	24	24	25	2.00
4064629--4066303	845	2.0	841	88	2	2479	24	24	25	25	2.00
4065961--4067350	719	1.9	710	89	2	2158	26	23	23	26	2.00
4066736--4068328	825	1.9	823	87	2	2354	27	23	23	25	2.00
4068305--4068354	26	1.9	26	87	0	73	22	28	18	32	1.97
4068781--4068839	27	2.2	27	81	6	66	55	8	8	27	1.58
4069203--4069255	26	2.0	26	92	0	88	28	22	20	28	1.99
4070344--4070422	26	3.0	26	96	0	140	26	24	20	29	1.99
4071115--4071165	26	2.0	26	100	0	102	25	27	19	27	1.99
4070370--4071880	743	2.0	741	89	1	2269	27	23	22	26	2.00
4072015--4072065	26	2.0	26	100	0	102	27	25	19	27	1.99
4071956--4072366	226	1.8	226	87	1	617	18	28	27	26	1.98
4073136--4073188	26	2.0	26	96	0	97	26	28	20	24	1.99
4074039--4074091	26	2.0	26	89	7	81	30	24	18	26	1.98
4074942--4074994	26	2.0	26	100	0	106	26	26	20	26	1.99
4075844--4075896	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4072167--4077660	903	6.1	900	86	3	7198	25	24	24	25	2.00
4076744--4076796	26	2.0	26	96	0	97	32	26	15	26	1.95
4079461--4079511	26	2.0	26	100	0	102	25	27	19	27	1.99
4080189--4080239	26	2.0	26	92	0	84	29	25	19	25	1.99
4078745--4081632	728	3.9	732	92	2	4506	27	23	23	26	2.00
4080922--4080972	26	2.0	26	96	0	93	27	27	17	27	1.98
4081822--4081872	26	2.0	26	92	0	84	25	23	21	29	1.99
4082049--4082099	26	2.0	26	92	0	84	27	21	19	31	1.97
4081747--4082400	226	2.9	226	85	0	867	19	27	26	26	1.99
4083163--4083215	26	2.0	26	92	0	88	26	26	20	26	1.99
4082222--4085793	890	4.0	902	86	3	4556	25	24	24	25	2.00
4086620--4086670	26	2.0	26	100	0	102	25	27	19	27	1.99
4087990--4088047	26	2.2	26	81	9	64	60	8	10	20	1.55
4088214--4088249	12	3.0	12	95	0	63	2	63	25	8	1.36
4088430--4088480	26	2.0	26	100	0	102	25	27	19	27	1.99
4085801--4092705	905	7.7	899	85	4	8939	25	24	23	25	2.00
4092010--4092062	26	2.0	26	92	0	88	24	24	24	26	2.00
4094300--4094352	26	2.0	26	96	0	97	24	26	22	26	2.00
4095198--4095250	26	2.0	26	88	0	79	24	22	24	28	2.00
4096097--4096149	26	2.0	26	96	0	97	26	24	20	28	1.99
4093442--4096890	898	3.8	898	86	2	4668	26	24	23	25	2.00
4098311--4098364	26	2.0	27	96	3	101	25	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4096987--4099032	885	2.3	882	83	6	2605	27	24	22	24	2.00
4099036--4099075	20	2.0	20	95	0	71	5	42	30	22	1.75
4100739--4100791	26	2.0	26	92	0	88	24	24	22	28	2.00
4099882--4104194	900	4.8	881	85	5	5378	25	24	23	25	2.00
4102516--4102568	26	2.0	26	92	0	88	30	24	18	26	1.98
4103416--4103468	26	2.0	26	92	0	88	28	26	16	28	1.97
4104124--4104149	12	2.2	12	100	0	52	0	65	26	7	1.20
4104168--4104220	26	2.0	26	96	0	97	26	24	20	28	1.99
4103392--4107084	711	5.1	725	84	7	4105	26	23	23	26	2.00
4107217--4107269	26	2.0	26	85	0	70	26	22	24	26	2.00
4106335--4109456	906	3.5	881	85	5	3960	25	24	24	25	2.00
4109839--4109891	26	2.0	26	92	0	88	26	22	20	30	1.98
4110714--4110766	26	2.0	26	92	0	88	30	26	16	26	1.97
4109459--4112984	903	4.0	892	83	5	3928	26	23	23	26	2.00
4113960--4114012	26	2.0	26	85	0	70	26	26	18	28	1.98
4114155--4114185	12	2.6	12	100	0	62	12	29	19	38	1.89
4114830--4114883	26	2.1	26	92	0	90	27	22	18	31	1.97
4113299--4122300	894	10.1	893	85	5	11077	25	24	23	25	2.00
4118380--4118432	26	2.0	26	85	0	70	26	20	20	32	1.98
4119282--4119334	26	2.0	26	89	7	81	30	24	16	28	1.97
4120173--4120225	26	2.0	26	96	0	97	26	24	20	28	1.99
4121072--4121124	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4121958--4122010	26	2.0	26	88	0	79	30	24	16	28	1.97
4122625--4129295	900	7.4	901	88	2	9026	25	24	24	25	2.00
4126196--4126248	26	2.0	26	92	0	88	30	24	20	24	1.99
4127095--4127147	26	2.0	26	92	7	90	30	22	20	26	1.98
4128884--4129699	410	2.0	405	85	7	1111	22	22	27	27	1.99
4132340--4135036	716	3.8	709	89	2	4038	26	23	23	27	2.00
4134959--4135251	159	1.8	159	80	2	347	20	27	29	22	1.98
4135299--4135351	26	2.0	26	92	0	88	30	26	16	26	1.97
4136204--4136256	26	2.0	26	92	0	88	26	26	20	26	1.99
4137112--4137161	25	2.0	26	92	4	84	30	24	16	30	1.96
4135118--4138057	907	3.3	901	86	2	3999	25	25	24	24	2.00
4138002--4138054	26	2.0	26	96	0	97	26	24	20	28	1.99
4137914--4138232	174	1.8	174	87	0	476	22	30	24	23	1.99
4138176--4138228	26	2.0	26	92	0	88	30	26	16	26	1.97
4139078--4139130	26	2.0	26	96	0	97	26	28	18	26	1.98
4140863--4140910	25	1.9	25	95	0	87	25	22	20	31	1.98
4141036--4141088	26	2.0	26	96	0	97	26	24	20	28	1.99
4141934--4141986	26	2.0	26	81	0	61	26	22	18	32	1.97
4143819--4143871	26	2.0	26	96	0	97	28	26	18	26	1.98
4143351--4145168	887	2.0	895	83	5	2328	25	24	24	25	2.00
4146821--4146873	26	2.0	26	88	0	79	26	24	20	28	1.99
4147718--4147771	27	2.0	27	96	3	101	29	25	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4147955--4150634	876	3.1	860	83	7	3414	26	24	23	25	2.00
4150155--4151142	517	1.9	518	89	2	1529	26	22	24	27	2.00
4153296--4153348	26	2.0	26	88	0	79	26	20	20	32	1.98
4151546--4153910	887	2.7	880	85	5	3155	26	23	23	25	2.00
4154208--4156743	897	2.8	898	87	2	3687	25	25	24	25	2.00
4156279--4156328	26	1.9	26	95	0	91	24	26	20	30	1.98
4156892--4156944	26	2.0	26	85	7	72	32	22	18	26	1.97
4156918--4157228	172	1.8	172	86	5	450	19	25	31	23	1.98
4157129--4157383	132	1.9	132	88	3	379	17	23	34	24	1.96
4157936--4158285	159	2.2	159	86	1	477	22	28	27	21	1.99
4158259--4158311	26	2.0	26	92	0	88	30	26	16	26	1.97
4158285--4158620	172	2.0	172	87	1	494	20	26	31	22	1.98
4158483--4158744	132	2.0	132	85	1	355	18	26	32	22	1.97
4161015--4161066	25	2.0	26	88	3	79	28	25	17	28	1.97
4159438--4163183	899	4.2	890	85	3	4843	25	24	23	26	2.00
4162796--4162848	26	2.0	26	100	0	106	26	22	20	30	1.98
4164423--4164475	26	2.0	26	85	0	70	28	20	18	32	1.97
4165324--4165376	26	2.0	26	92	0	88	26	22	20	30	1.98
4166216--4166268	26	2.0	26	85	0	70	28	24	18	28	1.98
4167118--4167170	26	2.0	26	89	7	81	32	26	16	24	1.97
4163725--4168804	893	5.7	893	87	3	6887	26	24	23	25	2.00
4168008--4168060	26	2.0	26	88	0	79	28	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4169634--4171107	712	2.1	715	88	3	2211	26	24	23	25	2.00
4171220--4171272	26	2.0	26	92	0	88	24	28	20	26	1.99
4170343--4176951	876	7.4	896	84	5	7939	25	24	24	25	2.00
4173894--4173946	26	2.0	26	85	7	72	28	20	22	28	1.99
4174775--4174827	26	2.0	26	88	0	79	26	24	18	30	1.98
4172276--4176951	899	5.3	878	84	4	5480	25	24	23	25	2.00
4177343--4177395	26	2.0	26	88	0	79	26	26	18	28	1.98
4176953--4179814	879	3.2	887	85	6	3572	25	25	24	24	2.00
4180803--4180855	26	2.0	26	88	0	79	30	26	18	24	1.98
4182583--4182632	26	1.9	26	91	0	82	26	28	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129