genome.fa.s24.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  31  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4183485--4183537	26	2.0	26	85	0	70	32	22	18	26	1.97
4179966--4196379	902	18.4	901	80	7	17396	25	24	24	25	2.00
4188920--4188972	26	2.0	26	92	0	88	32	20	15	32	1.93
4189761--4189813	26	2.0	26	92	0	88	30	24	18	26	1.98
4191552--4191602	26	2.0	26	96	0	93	29	29	13	27	1.94
4192441--4192493	26	2.0	26	88	0	79	28	22	20	28	1.99
4193297--4193349	26	2.0	26	92	0	88	30	22	18	28	1.98
4195086--4195138	26	2.0	26	92	0	88	28	22	20	28	1.99
4195993--4196043	26	2.0	26	88	0	75	31	21	17	29	1.96
4192739--4196379	905	4.1	901	87	3	5109	25	24	24	25	2.00
4196200--4196557	178	2.0	177	90	2	558	27	23	17	31	1.97
4197061--4197113	26	2.0	26	92	0	88	24	24	22	28	2.00
4197945--4197995	26	2.0	26	92	0	84	25	23	19	31	1.98
4200549--4200620	26	2.8	26	86	0	99	27	23	18	30	1.97
4202350--4202402	26	2.0	26	96	0	97	28	26	18	26	1.98
4203385--4203437	26	2.0	26	92	0	88	30	26	16	26	1.97
4203970--4204020	26	2.0	26	88	0	75	29	21	17	31	1.96
4205712--4205764	26	2.0	26	92	0	88	26	22	20	30	1.98
4206456--4206508	26	2.0	26	96	0	97	26	26	18	28	1.98
4207342--4207394	26	2.0	26	92	0	88	26	22	20	30	1.98
4206438--4210646	892	4.8	886	84	6	5144	25	24	23	25	2.00
4209975--4211470	823	1.8	821	87	1	2210	27	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4212293--4212345	26	2.0	26	100	0	106	26	26	20	26	1.99
4213193--4213245	26	2.0	26	96	0	97	28	26	18	26	1.98
4214534--4214588	26	2.2	25	87	9	76	34	23	14	27	1.94
4214563--4217856	876	3.8	877	90	1	4792	25	24	23	25	2.00
4219142--4219194	26	2.0	26	96	0	97	28	26	18	26	1.98
4217938--4220678	878	3.1	861	81	7	3272	25	25	23	24	2.00
4219946--4221465	706	2.2	697	87	3	2175	26	24	23	25	2.00
4223956--4224008	26	2.0	26	100	0	106	26	26	20	26	1.99
4225754--4225806	26	2.0	26	92	0	88	32	20	18	28	1.97
4223297--4227166	899	4.3	897	86	3	5284	26	24	23	25	2.00
4227326--4227381	26	2.2	26	93	0	94	32	25	16	26	1.96
4228146--4228198	26	2.0	26	96	0	97	28	26	18	26	1.98
4229046--4229098	26	2.0	26	96	0	97	28	26	18	26	1.98
4229944--4229995	25	2.0	26	96	3	97	26	25	21	26	1.99
4227687--4230430	897	3.1	894	86	3	3814	25	24	23	25	2.00
4230019--4230844	414	2.0	414	91	1	1345	25	22	23	28	1.99
4231226--4231278	26	2.0	26	85	7	72	28	22	16	32	1.96
4231226--4235683	901	4.9	894	83	7	5045	25	24	24	25	2.00
4234604--4234704	49	2.1	49	88	0	148	17	38	19	23	1.93
4238304--4238355	26	2.0	26	96	0	95	28	26	17	26	1.97
4235632--4239292	899	4.1	899	85	2	4936	25	25	24	25	2.00
4239212--4239264	26	2.0	26	85	0	70	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4240744--4240796	26	2.0	26	89	7	81	30	22	18	28	1.98
4239293--4247507	848	9.4	875	74	14	4922	26	24	23	25	2.00
4243323--4243401	26	3.0	26	92	0	131	29	27	16	26	1.97
4244202--4244254	26	2.0	26	92	0	88	32	24	15	28	1.95
4245957--4246009	26	2.0	26	96	0	97	28	26	16	28	1.97
4247615--4247665	26	2.0	26	92	0	84	23	25	19	31	1.98
4249396--4249448	26	2.0	26	92	0	88	28	24	18	28	1.98
4252917--4252969	26	2.0	26	89	7	81	32	24	15	28	1.95
4250379--4255540	901	5.8	897	87	3	6663	25	24	24	25	2.00
4253818--4253870	26	2.0	26	96	0	97	28	26	20	24	1.99
4247682--4255540	869	8.9	876	84	6	9089	25	24	24	25	2.00
4256292--4256344	26	2.0	26	96	0	97	26	24	20	28	1.99
4258744--4258796	26	2.0	26	92	0	88	26	26	22	24	2.00
4257013--4259534	876	2.8	882	84	4	3218	25	24	24	25	2.00
4258770--4260247	712	2.1	708	87	2	2160	26	24	23	26	2.00
4260350--4260402	26	2.0	26	96	0	97	24	22	20	32	1.98
4261851--4263970	735	2.9	721	86	4	2813	27	22	23	26	1.99
4263284--4263336	26	2.0	26	92	0	88	33	24	15	26	1.95
4264344--4264394	26	2.0	26	92	0	84	23	27	19	29	1.98
4266049--4266101	26	2.0	26	92	0	88	33	28	11	26	1.91
4268661--4268713	26	2.0	26	89	7	81	26	24	18	30	1.98
4267794--4273877	898	6.9	893	85	4	7882	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4269560--4269610	26	2.0	26	92	0	84	25	25	15	33	1.95
4270454--4270506	26	2.0	26	92	0	88	26	26	18	28	1.98
4271970--4273851	899	2.1	901	87	2	2681	24	25	24	25	2.00
4273110--4274560	702	2.0	707	87	2	2083	26	23	23	26	2.00
4275528--4275580	26	2.0	26	92	0	88	30	26	18	24	1.98
4273822--4277053	844	3.8	850	82	6	3564	26	24	23	25	2.00
4273799--4277154	843	3.9	844	81	8	3816	26	24	23	25	2.00
4277269--4278347	540	2.0	539	90	0	1676	28	24	20	26	1.99
4278521--4278572	26	2.0	26	92	0	86	25	25	19	30	1.98
4282858--4282910	26	2.0	26	96	0	97	26	24	20	28	1.99
4283802--4284701	455	2.0	457	89	0	1365	27	22	23	27	1.99
4287799--4287874	26	2.9	26	100	0	152	23	26	22	27	1.99
4284259--4289400	903	5.7	900	86	2	6719	25	24	23	25	2.00
4289410--4292652	899	3.6	901	93	3	5375	25	24	24	25	2.00
4293418--4293470	26	2.0	26	89	7	81	26	24	20	28	1.99
4293764--4293816	26	2.0	26	96	0	97	26	24	20	28	1.99
4293323--4293837	173	3.0	172	88	1	726	19	29	28	22	1.98
4295497--4295549	26	2.0	26	92	7	90	30	26	16	26	1.97
4296348--4296400	26	2.0	26	96	0	97	26	28	20	24	1.99
4296531--4296583	26	2.0	26	100	0	106	26	26	20	26	1.99
4299149--4299201	26	2.0	26	96	0	97	26	28	20	24	1.99
4297406--4299915	883	2.8	884	88	2	3676	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4299891--4299941	26	2.0	26	92	0	84	29	25	15	29	1.96
4299120--4300646	726	2.1	730	87	3	2188	26	23	23	26	2.00
4300777--4300829	26	2.0	26	96	0	97	26	24	22	26	2.00
4302556--4302606	26	2.0	26	100	0	102	27	25	19	27	1.99
4302805--4307123	717	6.0	717	84	4	5597	26	24	22	26	2.00
4308122--4308174	26	2.0	26	96	0	97	28	26	18	26	1.98
4309875--4309927	26	2.0	26	100	0	106	26	26	20	26	1.99
4307124--4311258	884	4.7	886	83	6	4862	25	24	23	25	2.00
4310759--4310811	26	2.0	26	96	0	97	28	26	18	26	1.98
4311354--4311406	26	2.0	26	96	0	97	28	26	18	26	1.98
4313832--4313883	25	2.0	26	92	3	88	26	21	23	28	1.99
4314731--4314782	25	2.0	26	92	3	88	26	23	21	28	1.99
4315632--4315690	26	2.3	26	91	5	95	27	28	20	23	1.99
4315765--4315797	11	3.0	11	100	0	66	18	27	36	18	1.94
4312970--4317335	899	4.9	895	87	3	5775	25	24	24	25	2.00
4316537--4316588	25	2.0	26	88	3	79	26	21	23	28	1.99
4318129--4318178	26	2.0	26	92	4	84	26	30	18	26	1.98
4319029--4319078	26	1.9	26	100	0	100	26	26	20	28	1.99
4319925--4319977	26	2.0	26	92	0	88	30	26	16	26	1.97
4320824--4320876	26	2.0	26	88	0	79	28	22	18	30	1.98
4317854--4325121	898	8.2	897	85	5	9268	25	25	24	25	2.00
4324351--4324403	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4325095--4325147	26	2.0	26	89	7	81	30	24	16	28	1.97
4325973--4326025	26	2.0	26	92	0	88	28	24	18	28	1.98
4327752--4327804	26	2.0	26	100	0	106	26	26	20	26	1.99
4328632--4328682	26	2.0	26	92	0	84	27	27	17	27	1.98
4329536--4329588	26	2.0	26	92	0	88	28	24	18	28	1.98
4325084--4330329	904	5.9	898	85	5	6490	25	24	23	25	2.00
4332026--4332078	26	2.0	26	96	0	97	28	26	20	24	1.99
4332928--4332979	26	2.0	26	100	0	104	26	26	19	26	1.99
4330285--4333689	901	3.9	890	85	5	4432	25	24	23	25	2.00
4334499--4334551	26	2.0	26	100	0	106	26	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129