genome.fa.s24.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  53  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7490573--7490606	2	17.0	2	87	0	50	50	5	0	44	1.26
7492957--7492986	6	5.0	6	100	0	60	16	0	0	83	0.65
7500065--7500150	42	2.0	42	93	0	145	56	13	10	18	1.65
7506944--7507000	30	1.9	30	82	13	73	54	8	21	15	1.68
7509847--7509934	14	7.4	11	70	26	56	72	2	5	19	1.15
7510893--7511000	3	35.7	3	87	3	146	62	2	1	33	1.21
7517888--7517933	18	2.4	19	82	17	60	60	0	0	39	0.97
7517891--7517939	21	2.3	20	82	6	53	61	0	0	38	0.96
7518574--7518619	24	1.9	24	90	0	74	28	45	4	21	1.71
7521986--7522029	22	2.0	22	82	8	54	40	0	0	59	0.98
7522685--7522725	10	4.1	10	87	0	55	12	14	17	56	1.68
7522690--7522733	10	4.4	10	88	0	52	13	11	20	54	1.69
7533133--7533227	48	2.0	48	93	0	163	35	18	10	34	1.86
7534094--7534492	197	2.0	197	89	0	602	41	9	15	33	1.80
7543641--7543846	108	1.9	107	82	6	256	53	16	15	15	1.74
7543839--7544026	35	5.3	35	76	5	173	45	16	22	15	1.85
7543937--7544042	35	3.0	35	70	4	97	48	13	20	17	1.81
7544124--7544222	35	2.8	36	72	3	94	54	17	13	15	1.71
7544070--7544257	70	2.7	69	68	10	157	48	16	18	16	1.81
7544337--7544556	35	6.2	35	73	6	140	50	15	18	15	1.79
7544673--7544909	36	6.7	36	72	8	157	49	14	17	18	1.79
7544656--7544753	36	2.8	35	75	6	90	50	13	19	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7544629--7544959	71	4.7	70	74	10	205	48	14	18	19	1.82
7544841--7544898	18	3.3	18	67	13	57	50	15	15	18	1.79
7544640--7544948	35	8.8	35	73	8	166	48	13	18	18	1.80
7544797--7544958	34	4.7	34	80	11	113	50	15	17	17	1.79
7544690--7545105	35	11.8	36	70	11	193	48	14	19	18	1.81
7546203--7546280	24	3.2	24	81	7	86	15	2	5	76	1.06
7558062--7558092	16	1.9	16	93	0	53	45	9	12	32	1.75
7563599--7563638	20	2.0	20	85	5	53	80	2	10	7	1.00
7563589--7563651	23	2.6	24	75	9	58	79	1	11	7	1.00
7563598--7563697	29	3.6	26	72	12	74	77	4	13	6	1.10
7563712--7563742	13	2.4	13	94	0	53	83	3	12	0	0.75
7565591--7566484	234	3.8	234	79	5	940	32	10	11	46	1.74
7566814--7566852	15	2.5	15	87	8	51	51	0	5	43	1.24
7566823--7566852	15	1.9	16	93	6	53	50	0	6	43	1.28
7569576--7569639	31	2.1	31	96	0	119	40	14	14	31	1.85
7571449--7571522	21	3.6	21	83	3	78	14	25	29	29	1.95
7576598--7577337	201	3.7	201	78	7	546	34	11	12	41	1.79
7576558--7577337	202	3.9	200	79	7	711	34	11	12	41	1.79
7578488--7578522	17	2.1	17	100	0	70	31	22	17	28	1.96
7584620--7584663	23	1.9	24	86	9	65	56	9	2	31	1.43
7598752--7599108	185	1.9	183	89	1	543	37	13	24	24	1.91
7602196--7602226	15	2.1	15	93	0	53	45	16	6	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7602465--7602537	19	3.7	20	78	12	71	49	0	6	43	1.29
7602708--7602732	11	2.3	11	100	0	50	68	0	0	32	0.90
7602738--7602794	29	2.0	29	86	10	82	64	5	0	29	1.15
7602704--7602852	45	3.3	44	74	10	122	62	2	1	34	1.15
7602791--7602850	19	3.1	19	81	13	77	65	0	3	31	1.09
7602720--7602860	8	16.9	8	69	19	67	62	2	1	34	1.16
7602791--7602850	20	3.0	20	80	4	77	65	0	3	31	1.09
7602716--7602858	46	3.2	44	71	19	118	62	2	1	33	1.15
7603180--7603258	9	8.3	9	72	14	52	30	1	6	62	1.28
7603180--7603268	19	4.7	18	75	17	65	32	1	6	59	1.31
7603216--7603258	10	4.6	9	86	11	59	23	2	9	65	1.34
7603900--7603924	2	12.5	2	100	0	50	52	0	0	48	1.00
7603924--7603970	2	23.5	2	93	0	76	53	0	44	2	1.12
7604998--7605026	14	2.1	14	100	0	58	51	6	0	41	1.28
7605004--7605030	12	2.2	12	100	0	54	51	7	0	40	1.30
7605484--7605577	36	2.6	36	81	6	111	48	5	13	31	1.65
7606725--7606763	14	2.7	14	88	4	51	30	0	12	56	1.37
7606868--7606892	4	6.2	4	100	0	50	24	0	24	52	1.48
7609935--7609964	6	5.0	6	100	0	60	16	0	0	83	0.65
7617053--7617138	42	2.0	42	93	0	145	56	13	10	18	1.65
7623688--7623781	45	2.1	44	86	11	129	42	12	17	27	1.85
7628009--7628058	25	2.0	25	88	7	75	52	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7628012--7628065	25	2.2	25	83	6	65	53	1	1	42	1.22
7628583--7628620	19	2.0	19	85	10	51	57	2	5	34	1.35
7634082--7634114	3	11.0	3	100	0	66	33	0	0	66	0.92
7635891--7635936	20	2.3	20	88	3	67	23	4	2	69	1.17
7637359--7637413	27	2.0	27	92	0	92	41	40	1	16	1.59
7639892--7639927	10	3.6	10	92	0	54	44	22	0	33	1.53
7642367--7642471	51	2.1	51	94	0	183	32	12	20	34	1.90
7643624--7643679	21	2.7	20	76	15	60	42	35	1	19	1.62
7643647--7643715	7	9.6	7	75	12	59	43	36	2	17	1.64
7646568--7646860	84	3.5	82	79	3	289	37	12	18	31	1.89
7647164--7647209	23	2.0	23	83	8	58	47	8	17	26	1.76
7650961--7650999	20	1.9	21	84	5	53	51	10	12	25	1.71
7652448--7652477	13	2.2	14	94	5	53	50	10	6	33	1.62
7652557--7652605	3	16.0	3	87	4	71	67	2	0	30	1.02
7652558--7652657	9	10.8	9	78	9	51	71	5	2	22	1.16
7653091--7653128	18	2.1	18	85	9	51	57	23	5	13	1.56
7655195--7655239	22	2.1	21	87	4	63	17	4	8	68	1.32
7658384--7658431	12	4.0	12	81	7	53	16	0	37	45	1.48
7658424--7658487	26	2.5	26	81	0	65	25	0	29	45	1.54
7658384--7658461	7	12.3	7	72	20	64	17	0	35	46	1.49
7658524--7658564	19	2.2	19	86	4	57	19	2	29	48	1.61
7658572--7658646	26	2.9	26	78	7	89	16	4	36	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7661629--7661696	19	3.8	18	74	16	61	64	8	1	25	1.30
7661629--7661697	18	3.8	18	75	7	61	65	8	1	24	1.30
7662411--7662477	34	2.0	34	85	5	91	52	8	0	38	1.33
7663806--7663862	7	8.0	7	80	9	53	66	0	0	33	0.92
7663785--7663864	40	2.0	41	82	9	101	62	1	0	36	1.03
7663783--7663864	35	2.4	34	84	8	105	62	1	0	36	1.03
7666643--7666691	25	1.9	26	91	4	82	46	2	10	40	1.49
7668662--7668691	15	2.0	15	100	0	60	46	0	0	53	1.00
7669228--7669266	12	3.2	12	100	0	78	38	10	7	43	1.67
7670616--7670643	14	2.0	14	100	0	56	35	14	0	50	1.43
7671908--7671940	13	2.8	12	90	9	50	72	9	6	12	1.26
7672458--7672494	17	2.2	17	100	0	74	59	0	10	29	1.31
7672628--7672672	22	2.0	22	100	0	90	13	33	0	53	1.40
7673388--7673430	15	2.8	16	92	3	70	37	6	9	46	1.63
7673877--7673930	27	2.0	27	82	7	65	5	31	1	61	1.30
7678938--7678966	6	4.8	6	100	0	58	48	0	0	51	1.00
7685780--7685832	24	2.1	26	89	6	83	32	3	9	54	1.50
7685935--7686359	213	2.0	212	89	1	654	31	9	18	40	1.83
7690281--7690315	16	2.2	16	94	0	61	28	11	11	48	1.74
7691427--7691463	19	1.9	19	94	0	65	27	10	10	51	1.70
7692952--7693002	21	2.4	21	90	0	75	27	25	17	29	1.98
7692952--7693016	21	3.1	21	86	4	69	27	21	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7698085--7698119	16	2.2	16	94	0	61	31	14	11	42	1.81
7698737--7698813	38	2.0	38	90	5	120	27	10	31	31	1.90
7699756--7699832	30	2.6	30	93	2	129	28	32	7	31	1.85
7701101--7701193	36	2.6	34	80	16	93	61	8	2	27	1.37
7701293--7701407	44	2.7	40	75	17	124	54	2	2	40	1.28
7701312--7701409	23	4.5	22	81	12	98	54	2	2	41	1.23
7701656--7701742	20	4.3	21	70	12	67	45	21	5	26	1.74
7705585--7705633	23	2.1	24	85	11	75	28	0	0	71	0.86
7706838--7706874	8	4.6	8	86	0	56	56	0	0	43	0.99
7707067--7707107	3	13.7	3	100	0	82	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129