genome.fa.s24.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  78  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12371973--12372031	29	2.0	29	100	0	118	38	3	16	40	1.66
12372276--12372359	11	7.9	11	72	16	52	52	22	1	23	1.54
12373478--12373550	22	3.6	22	75	21	95	56	9	0	34	1.32
12373478--12373565	38	2.4	37	92	5	142	55	7	1	35	1.36
12374551--12374580	11	2.7	11	94	0	51	43	16	0	40	1.48
12374642--12374673	16	1.9	17	93	6	57	78	3	6	12	1.06
12375247--12375293	20	2.3	20	85	7	60	40	2	0	57	1.11
12377219--12377295	29	2.6	29	76	8	75	38	7	1	51	1.39
12377245--12377349	30	3.5	30	81	2	104	44	3	1	49	1.31
12377325--12377391	17	3.9	16	80	16	73	53	1	1	43	1.19
12377327--12377391	18	3.8	17	80	11	71	52	1	1	44	1.19
12384816--12384849	17	2.0	17	100	0	68	35	5	17	41	1.74
12386698--12386744	23	2.0	23	100	0	94	55	17	14	12	1.70
12392950--12392990	19	2.3	19	91	8	68	51	0	0	48	1.00
12392947--12392993	19	2.8	17	84	15	62	48	0	0	51	1.00
12392983--12393044	18	3.4	18	77	18	65	67	0	0	32	0.91
12392984--12393030	24	2.0	24	95	0	85	65	0	0	34	0.93
12394124--12394166	16	2.7	16	77	0	50	60	0	0	39	0.97
12394233--12394292	22	2.9	21	69	14	52	36	5	1	56	1.31
12394671--12394727	18	3.2	18	80	11	64	57	0	3	38	1.16
12394667--12394731	22	3.0	22	69	24	66	56	0	3	40	1.15
12394677--12394736	18	3.3	19	82	13	74	60	0	1	38	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12394915--12394976	33	1.9	32	90	3	97	41	1	1	54	1.19
12394907--12394981	33	2.4	29	80	18	96	44	1	1	53	1.17
12395795--12395832	2	19.5	2	89	5	60	52	0	0	47	1.00
12412926--12412957	2	16.0	2	100	0	64	50	0	0	50	1.00
12418640--12418715	32	2.4	32	86	4	100	64	2	2	30	1.21
12418709--12418760	18	2.8	18	85	5	68	71	5	0	23	1.07
12418708--12418760	19	2.8	19	80	8	63	71	5	0	22	1.06
12418708--12418783	38	2.0	39	82	5	93	69	3	0	26	1.05
12418739--12418802	30	2.2	29	83	8	76	68	4	0	26	1.09
12418836--12418888	22	2.4	22	87	0	70	60	3	1	33	1.26
12419632--12419656	13	1.9	13	100	0	50	76	0	0	24	0.80
12419826--12419872	2	24.0	2	86	4	69	44	0	4	51	1.21
12420727--12420778	10	5.0	10	75	9	50	53	0	1	44	1.11
12420700--12420778	20	3.9	20	82	11	81	54	1	5	39	1.30
12420728--12420778	21	2.4	21	87	9	77	54	0	1	43	1.11
12430946--12430997	25	2.1	25	96	0	95	28	15	17	38	1.90
12436485--12436512	2	14.0	2	100	0	56	50	0	0	50	1.00
12439467--12439536	6	10.5	6	74	18	50	78	1	2	17	0.94
12439474--12439531	9	6.1	10	78	13	61	79	1	1	17	0.90
12439467--12439535	20	3.4	19	82	15	77	78	1	2	17	0.95
12439467--12439536	27	2.6	26	78	17	72	78	1	2	17	0.94
12439467--12439536	8	8.1	8	72	20	52	78	1	2	17	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12440086--12440116	10	3.0	10	90	9	53	58	12	0	29	1.35
12445390--12445616	58	3.8	58	83	7	242	34	15	6	43	1.73
12445630--12445662	6	5.8	6	92	7	52	84	0	0	15	0.61
12445629--12445668	16	2.5	15	88	11	62	82	0	0	17	0.67
12448879--12449151	58	4.7	57	80	11	288	43	6	13	36	1.70
12448877--12449151	117	2.4	115	84	8	344	43	6	13	36	1.70
12450185--12450253	32	2.2	32	82	7	79	69	4	0	26	1.07
12450301--12450357	21	2.7	21	80	0	69	54	3	1	40	1.28
12451287--12451325	2	20.0	2	84	5	53	43	0	5	51	1.24
12451520--12451562	14	3.0	14	83	10	52	51	6	0	41	1.29
12452159--12452216	20	2.9	19	82	7	62	55	1	5	37	1.33
12452134--12452216	19	4.6	18	72	14	64	56	1	4	37	1.28
12453880--12453937	29	2.0	29	83	6	73	44	1	3	50	1.29
12454509--12454558	21	2.5	20	90	9	75	50	0	0	50	1.00
12459187--12459213	2	13.5	2	100	0	54	0	48	0	51	1.00
12471370--12471394	13	1.9	13	100	0	50	80	0	0	20	0.72
12471363--12471435	21	3.5	20	78	17	69	80	0	4	15	0.85
12471358--12471442	5	16.8	5	71	16	59	80	0	4	15	0.88
12471384--12471443	30	2.1	27	85	14	77	83	0	5	11	0.80
12471365--12471435	10	6.6	10	84	9	79	81	0	2	15	0.80
12471353--12471431	20	3.4	25	72	22	66	79	0	5	15	0.89
12471466--12471514	25	1.9	26	83	4	64	79	4	6	10	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12472040--12472091	26	2.0	27	88	3	79	46	9	3	40	1.55
12479426--12479461	12	3.0	12	100	0	72	33	0	8	58	1.28
12481545--12481577	17	1.9	17	93	0	57	54	0	9	36	1.32
12487184--12487217	14	2.4	14	90	5	50	82	5	5	5	0.95
12487177--12487218	22	1.9	22	85	0	57	80	7	7	4	1.00
12488672--12489079	42	9.7	42	78	7	375	30	12	18	38	1.87
12488672--12489051	169	2.2	170	85	5	520	30	11	19	38	1.87
12488672--12489058	85	4.6	84	82	7	451	30	11	19	39	1.87
12489018--12489103	38	2.3	38	81	4	102	36	15	15	33	1.88
12489371--12489403	11	2.8	12	90	9	59	24	0	6	69	1.10
12489434--12489473	15	2.6	15	80	4	53	82	0	7	10	0.84
12490018--12490055	20	2.0	18	90	10	58	34	7	10	47	1.67
12490061--12490235	21	7.9	21	65	17	68	32	3	9	55	1.48
12490099--12490137	20	1.9	21	94	5	71	35	2	5	56	1.35
12490080--12490184	47	2.3	47	81	6	126	33	1	7	57	1.38
12490163--12490207	24	1.9	23	95	4	81	31	6	8	53	1.58
12490149--12490211	24	2.4	27	76	15	78	31	4	7	55	1.50
12490206--12490261	16	3.5	15	72	27	53	33	3	7	55	1.45
12490061--12490241	67	2.7	64	79	12	177	31	3	8	56	1.46
12490204--12490266	32	2.0	32	96	0	117	31	4	7	55	1.50
12490244--12490438	88	2.3	87	81	11	226	29	6	12	51	1.64
12490320--12490397	32	2.4	32	89	0	120	28	6	11	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12490358--12490464	56	1.9	56	84	1	144	29	6	12	51	1.64
12490479--12490566	33	2.7	33	78	3	90	29	6	11	52	1.63
12490541--12490592	20	2.6	20	90	6	79	30	7	13	48	1.71
12490679--12490734	24	2.3	24	85	8	78	33	3	8	53	1.49
12490863--12490941	20	4.2	19	69	18	58	35	5	10	49	1.59
12491816--12491848	2	16.5	2	100	0	66	48	0	51	0	1.00
12492650--12492690	20	2.0	20	85	9	55	26	2	9	60	1.40
12492631--12492698	29	2.3	30	82	5	75	26	4	10	58	1.49
12497564--12497609	13	3.1	15	78	15	51	76	2	6	15	1.09
12497942--12498053	40	2.8	39	82	9	136	43	14	11	30	1.81
12498780--12498915	45	3.0	45	84	5	177	58	2	21	16	1.51
12499789--12499871	39	2.1	40	90	2	132	18	19	8	54	1.68
12501477--12501525	22	2.1	24	82	17	59	51	2	0	46	1.12
12501504--12501541	20	1.9	20	88	0	58	47	0	0	52	1.00
12503783--12503856	23	3.2	23	69	11	62	44	2	0	52	1.15
12504099--12504157	21	2.8	20	75	7	55	44	1	1	52	1.21
12504336--12504410	21	3.4	22	77	18	84	45	2	2	49	1.30
12509802--12509840	20	2.0	19	85	5	51	41	2	2	53	1.28
12510355--12510409	13	4.4	13	78	13	53	50	1	0	47	1.11
12510355--12510436	21	3.5	24	78	15	73	46	1	0	52	1.08
12510357--12510436	11	6.9	11	78	13	81	46	1	0	52	1.08
12510479--12510512	14	2.4	14	90	0	50	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12510460--12510497	20	1.9	20	88	0	58	34	2	0	63	1.09
12513028--12513507	43	11.1	43	75	7	359	45	16	12	25	1.82
12513021--12513507	86	5.6	87	78	6	441	46	15	12	25	1.81
12513031--12513507	173	2.8	172	80	6	473	45	16	12	25	1.82
12513633--12513682	19	2.7	18	78	6	55	44	16	4	36	1.66
12513680--12513799	31	4.0	31	66	18	81	39	16	8	35	1.79
12513663--12513779	59	2.0	59	87	0	171	39	17	7	35	1.79
12513681--12513923	90	2.7	89	85	1	324	36	15	9	37	1.81
12513838--12513887	15	3.4	14	76	15	55	38	14	8	40	1.75
12513827--12513900	31	2.4	31	81	0	94	40	17	9	32	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129