genome.fa.s24.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  103  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17093879--17094009	66	2.0	66	92	0	217	30	19	10	38	1.86
17095519--17095548	10	3.1	10	95	4	53	63	0	0	36	0.95
17097941--17098008	22	3.1	21	80	4	82	55	2	2	38	1.30
17098058--17098111	20	2.7	20	97	2	99	44	0	0	55	0.99
17098419--17098482	31	2.0	32	84	3	85	54	1	1	42	1.19
17098544--17098579	17	2.1	17	90	10	56	47	0	0	52	1.00
17099414--17099443	9	3.3	9	100	0	60	43	0	10	46	1.37
17099818--17099866	24	2.0	24	96	0	89	18	20	12	48	1.79
17103341--17103391	26	2.0	26	88	3	77	33	9	5	50	1.59
17103535--17103579	23	1.9	24	81	4	56	82	4	6	6	0.95
17103817--17103896	29	2.8	29	74	12	76	51	2	1	45	1.22
17105938--17105969	2	16.0	2	100	0	64	50	0	0	50	1.00
17106005--17106070	31	2.1	31	83	5	80	50	7	9	33	1.62
17106626--17106656	16	2.0	15	93	6	53	45	0	0	54	0.99
17106834--17107336	254	2.0	258	90	3	806	49	6	7	36	1.57
17107149--17107187	9	4.1	9	84	12	51	64	0	0	35	0.94
17107148--17107188	20	2.1	19	90	4	64	60	0	0	39	0.96
17109462--17109524	27	2.3	27	94	0	108	31	4	3	60	1.33
17112643--17112671	3	9.7	3	100	0	58	31	0	0	68	0.89
17115775--17115829	27	2.0	28	85	3	76	41	0	3	54	1.18
17116169--17116227	17	3.5	17	68	21	52	47	1	0	50	1.11
17116526--17116562	14	2.7	14	84	15	51	16	16	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17116526--17116572	12	3.6	13	81	15	53	12	12	2	72	1.21
17116557--17116612	26	2.2	26	83	0	67	7	5	7	80	1.02
17117693--17117741	15	3.2	15	77	5	53	10	10	2	77	1.07
17119452--17119486	15	2.3	15	90	0	52	14	40	14	31	1.86
17119965--17120005	22	1.9	22	85	5	57	53	0	0	46	1.00
17119968--17120011	14	3.1	15	87	6	65	52	0	0	47	1.00
17120562--17120600	19	2.0	20	85	5	53	53	0	0	46	1.00
17120575--17120638	24	2.5	26	73	14	62	54	0	0	45	0.99
17120594--17120635	20	2.0	21	90	4	68	54	0	0	45	0.99
17120602--17120882	143	2.0	143	92	2	467	50	3	4	41	1.40
17122715--17122817	53	2.0	53	86	5	147	42	7	21	28	1.80
17126708--17126810	53	2.0	53	86	5	147	42	7	21	28	1.80
17140682--17140728	9	5.4	9	82	7	62	48	0	6	44	1.28
17140744--17140785	19	2.2	19	91	0	66	61	4	0	33	1.17
17140743--17140795	18	2.9	17	78	15	52	60	3	0	35	1.15
17140801--17140848	18	2.6	19	83	6	71	75	2	0	22	0.91
17140774--17140846	27	2.7	25	79	14	65	69	4	1	24	1.13
17141022--17141099	25	3.0	27	77	11	81	34	0	6	58	1.23
17141061--17141127	33	2.0	33	83	11	84	38	0	1	59	1.06
17141109--17141159	20	2.6	20	84	3	68	45	0	1	52	1.12
17141143--17141199	10	6.0	9	76	10	51	38	1	5	54	1.33
17142219--17142258	2	20.5	2	94	5	73	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17145690--17145753	29	2.3	29	81	7	71	40	0	7	51	1.31
17145763--17145839	22	3.8	21	74	11	70	48	0	5	46	1.24
17151945--17152005	31	2.0	31	83	6	79	29	16	11	42	1.83
17152630--17152670	18	2.3	18	95	0	73	36	7	7	48	1.59
17153202--17153274	15	4.9	15	70	8	51	23	5	28	42	1.76
17153635--17153675	18	2.4	17	88	8	64	12	2	0	85	0.70
17153653--17153703	13	3.8	13	89	10	68	13	5	1	78	1.02
17153641--17153686	18	2.5	18	86	10	58	15	4	0	80	0.86
17155742--17156127	62	6.3	61	72	9	261	42	11	14	30	1.82
17155903--17156125	123	1.8	120	81	8	272	41	11	14	33	1.81
17156115--17156152	19	2.0	19	100	0	76	42	26	10	21	1.85
17156411--17156477	34	2.1	31	86	10	91	26	17	13	41	1.87
17158685--17158733	17	3.0	17	79	5	57	59	0	0	40	0.98
17160130--17160170	17	2.2	19	87	12	59	73	0	0	26	0.84
17160166--17160196	16	1.9	16	93	0	53	80	0	19	0	0.71
17163560--17163697	52	2.7	50	76	6	152	36	18	5	38	1.75
17164209--17164259	25	2.0	25	100	0	102	31	19	0	49	1.49
17167535--17167567	14	2.3	15	89	5	50	6	30	0	63	1.18
17170196--17170273	33	2.4	33	84	4	95	28	23	8	39	1.84
17170419--17170467	25	1.9	25	83	4	62	30	16	12	40	1.85
17170477--17170586	33	3.4	32	79	8	116	28	20	6	45	1.75
17170107--17170852	156	4.8	155	76	6	521	29	21	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17170652--17170715	33	1.9	33	90	0	101	26	28	14	31	1.95
17170789--17170852	33	1.9	33	84	6	85	31	15	6	46	1.71
17172538--17172582	5	9.2	5	85	4	65	37	0	2	60	1.09
17176585--17176621	19	1.9	19	88	0	56	48	2	0	48	1.15
17176639--17176711	35	2.1	35	94	0	128	42	8	5	43	1.57
17177034--17177072	15	2.6	15	79	0	51	48	0	0	51	1.00
17178563--17178588	13	2.0	13	100	0	52	61	0	7	30	1.24
17181399--17181426	7	4.0	7	100	0	56	28	0	42	28	1.56
17189681--17189721	20	2.0	20	86	13	57	34	0	0	65	0.93
17189701--17189771	30	2.3	30	85	2	88	40	0	1	57	1.07
17191289--17191315	3	9.0	3	100	0	54	0	33	0	66	0.92
17206718--17206770	3	17.7	3	92	0	88	0	30	0	69	0.88
17206732--17206782	24	2.1	24	81	0	57	3	29	1	64	1.22
17207633--17207659	14	1.9	14	100	0	54	55	0	0	44	0.99
17208495--17208524	5	6.2	5	96	3	53	0	16	0	83	0.65
17208625--17208909	151	1.9	150	88	2	437	46	8	7	37	1.64
17214787--17214812	4	6.5	4	100	0	52	53	0	0	46	1.00
17219011--17219106	49	2.0	49	87	0	138	34	11	19	34	1.88
17221597--17221648	27	2.0	27	88	11	81	44	1	0	53	1.11
17222218--17222250	17	1.9	17	88	11	50	60	6	3	30	1.36
17222442--17222479	19	2.0	19	85	10	51	60	7	5	26	1.46
17222442--17222483	20	2.2	20	86	4	59	61	7	4	26	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17223767--17223805	12	3.2	12	81	3	51	46	0	2	51	1.14
17224701--17224749	8	6.0	8	78	4	53	38	0	2	59	1.09
17225078--17225110	4	8.2	4	93	0	57	51	21	0	27	1.48
17225078--17225134	8	7.1	8	91	0	60	50	12	0	36	1.40
17225088--17225136	4	12.2	4	95	0	62	51	8	0	40	1.32
17225080--17225136	12	4.8	12	91	0	69	50	10	0	38	1.37
17227863--17227893	2	15.5	2	100	0	62	48	0	0	51	1.00
17228236--17228260	2	12.5	2	100	0	50	48	0	0	52	1.00
17230154--17230178	13	1.9	13	100	0	50	0	16	0	84	0.63
17239963--17240103	72	2.0	72	85	2	194	27	19	23	29	1.98
17247875--17247911	2	18.5	2	100	0	74	51	0	0	48	1.00
17247911--17247959	2	24.5	2	100	0	98	51	0	48	0	1.00
17265969--17266048	41	2.0	41	84	0	106	42	21	16	20	1.89
17276087--17276156	20	3.6	20	75	7	72	31	0	0	68	0.90
17276115--17276161	18	2.8	16	78	15	51	31	0	0	68	0.90
17276120--17276152	14	2.2	15	89	10	50	33	0	0	66	0.92
17276090--17276160	12	5.7	12	77	14	56	32	0	0	67	0.91
17276100--17276161	11	5.5	11	74	14	56	33	0	0	66	0.92
17276980--17277100	39	3.1	39	82	4	127	28	0	41	28	1.62
17277034--17277171	21	6.9	21	73	9	90	28	0	44	26	1.54
17277019--17277171	60	2.6	59	93	3	204	28	0	43	27	1.55
17280431--17280458	14	2.0	14	100	0	56	57	14	7	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17285174--17285215	19	2.2	20	82	4	50	38	0	2	59	1.10
17285231--17285274	12	4.1	12	77	22	53	50	0	0	50	1.00
17285268--17285329	23	2.7	22	87	9	63	59	8	0	32	1.26
17285283--17285338	23	2.7	20	86	13	62	57	7	0	35	1.26
17289313--17289379	33	2.0	33	94	0	116	44	16	13	25	1.84
17292914--17292951	16	2.3	17	86	4	60	52	0	0	47	1.00
17292923--17293016	29	3.2	29	74	17	86	52	1	0	46	1.07
17294876--17295052	88	2.0	88	100	0	354	42	6	13	36	1.71
17296918--17296954	16	2.5	14	87	12	56	40	0	0	59	0.97
17298507--17298545	12	3.1	12	79	13	51	79	0	2	17	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129