genome.fa.s24.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  11  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1732175--1732457	123	2.4	123	81	7	343	33	12	8	45	1.72
1732481--1732558	28	2.9	28	83	11	83	76	1	6	15	1.04
1732495--1732554	16	3.8	16	82	8	70	80	1	5	13	0.96
1732497--1732572	6	12.8	6	72	18	52	77	1	6	14	1.03
1732477--1732576	37	2.7	34	80	13	101	76	1	7	16	1.06
1732494--1732549	15	3.7	15	79	6	60	78	1	5	14	1.00
1732520--1732572	26	2.0	28	88	7	83	79	1	5	13	0.99
1732482--1732558	32	2.4	30	82	8	91	77	1	5	15	1.00
1732497--1732652	11	13.9	11	71	17	83	75	3	3	17	1.08
1732595--1732646	4	12.5	4	78	8	50	78	1	1	17	0.93
1732598--1732634	17	2.1	18	90	5	58	81	2	0	16	0.81
1733504--1733601	22	4.5	22	73	22	64	72	1	2	24	1.02
1733530--1733634	4	27.2	4	69	21	55	70	0	0	28	0.94
1733530--1733578	14	3.5	14	81	8	64	73	0	0	26	0.83
1733504--1733632	18	7.5	17	69	17	88	69	0	1	27	1.02
1733528--1733634	58	1.9	56	83	14	141	71	0	0	28	0.93
1733930--1733971	18	2.3	18	91	0	66	2	7	7	83	0.89
1734053--1734102	1	50.0	1	79	0	55	6	0	4	90	0.57
1734054--1734095	18	2.3	18	100	0	84	4	0	4	90	0.55
1734053--1734102	25	2.1	23	88	7	73	6	0	4	90	0.57
1733859--1734214	126	2.9	123	87	5	488	27	13	12	46	1.78
1734180--1734214	16	2.3	15	95	5	61	2	0	5	91	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1734218--1734461	42	5.9	41	90	4	364	34	22	18	23	1.96
1734218--1734461	82	2.9	83	91	2	375	34	22	18	23	1.96
1734447--1734475	14	2.1	14	100	0	58	34	6	27	31	1.83
1734390--1734707	180	1.8	173	82	12	402	33	23	18	23	1.96
1734406--1734517	56	2.0	56	89	3	172	35	16	20	26	1.94
1734462--1734551	42	2.1	42	93	0	153	34	21	17	26	1.95
1734366--1734551	98	1.9	96	91	4	302	34	19	19	26	1.96
1734526--1734579	28	1.9	28	92	0	90	29	33	14	22	1.94
1734484--1734689	69	3.0	69	97	0	376	32	27	16	23	1.96
1734595--1734648	28	1.9	28	92	0	90	29	35	12	22	1.91
1734623--1734707	41	2.0	42	93	2	145	32	24	17	24	1.97
1734929--1735042	43	2.6	43	78	15	119	35	16	11	36	1.85
1734962--1735043	43	1.9	42	88	11	123	35	15	9	39	1.81
1735227--1735285	22	2.7	22	81	7	66	33	20	6	38	1.79
1736357--1736411	9	6.1	9	79	8	67	7	14	0	78	0.96
1736366--1736438	19	3.7	19	81	15	94	6	17	0	75	1.02
1740348--1740686	57	5.7	57	84	9	439	33	12	7	45	1.71
1740348--1740686	59	5.7	58	84	9	443	33	12	7	45	1.71
1740348--1740687	124	2.8	120	84	10	462	33	12	7	45	1.71
1740712--1740805	6	15.7	6	74	17	54	76	1	6	15	1.04
1740712--1740787	16	4.8	16	82	4	84	77	1	5	15	1.01
1740712--1740799	32	2.7	33	84	7	108	76	1	6	15	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740712--1740819	10	9.8	11	71	15	64	75	0	5	17	1.04
1740751--1740804	27	2.0	28	89	10	85	77	1	7	12	1.05
1740957--1740982	10	2.6	10	100	0	52	0	30	42	26	1.56
1741758--1741839	28	3.0	26	80	15	87	75	1	1	21	0.94
1741763--1741878	4	30.0	4	70	19	68	73	0	0	25	0.89
1741766--1741939	24	7.3	23	67	21	85	71	2	2	23	1.08
1741768--1741924	18	8.9	17	68	19	76	71	1	1	24	1.03
1741770--1741871	28	3.7	27	75	10	91	72	0	0	26	0.91
1741767--1741876	54	2.0	56	82	13	138	73	0	0	25	0.89
1741697--1741878	59	3.1	57	77	12	140	71	1	2	25	1.04
1741891--1741925	11	3.1	12	88	12	56	80	0	0	20	0.72
1741783--1741916	73	1.9	70	83	10	173	69	2	1	26	1.09
1741768--1741927	12	12.5	12	68	20	60	71	1	1	25	1.03
1742265--1742317	26	2.0	26	96	0	97	26	28	20	24	1.99
1742291--1743755	715	2.1	706	89	1	2239	26	23	24	25	2.00
1744747--1744800	26	2.1	26	100	0	108	27	25	18	27	1.98
1746526--1746578	26	2.0	26	85	7	72	28	24	18	28	1.98
1747391--1749412	711	2.8	708	88	3	2940	27	23	22	26	2.00
1749623--1749675	26	2.0	26	96	0	97	26	26	18	28	1.98
1750521--1750572	26	2.0	26	92	0	86	30	26	15	26	1.96
1748780--1753253	888	5.1	887	85	4	5873	25	24	24	25	2.00
1751408--1754487	888	3.5	887	75	12	3082	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1753175--1753224	26	1.9	26	95	0	91	24	24	22	30	1.99
1754027--1754079	26	2.0	26	92	0	88	28	24	18	28	1.98
1755632--1755684	26	2.0	26	92	0	88	28	24	18	28	1.98
1754762--1757235	891	2.7	893	86	3	3300	26	24	23	25	2.00
1757312--1757386	26	2.9	26	91	0	123	28	26	17	28	1.98
1758241--1758293	26	2.0	26	92	0	88	28	24	18	28	1.98
1757338--1760157	905	3.1	896	86	4	3825	26	24	23	25	2.00
1759146--1759222	26	3.0	26	98	0	145	24	28	19	27	1.99
1760394--1760446	26	2.0	26	85	0	70	26	22	20	30	1.98
1761285--1761337	26	2.0	26	88	0	79	26	20	20	32	1.98
1762128--1762180	26	2.0	26	88	0	79	26	28	20	24	1.99
1762975--1763027	26	2.0	26	88	0	79	28	26	18	26	1.98
1763145--1763196	26	2.0	25	92	3	86	28	23	19	28	1.98
1764930--1764982	26	2.0	26	96	0	97	28	26	18	26	1.98
1766568--1766619	26	2.0	26	88	0	77	28	23	17	30	1.97
1767456--1767506	26	2.0	26	96	0	93	27	23	19	29	1.98
1765819--1768619	886	3.1	883	84	5	3599	25	24	24	25	2.00
1768889--1768944	26	2.2	26	100	0	112	28	25	19	26	1.99
1770483--1770535	26	2.0	26	96	0	97	26	28	20	24	1.99
1771599--1771650	26	2.0	26	96	0	95	30	23	21	25	1.99
1775144--1775191	24	2.0	23	88	8	69	31	20	18	29	1.97
1776030--1776079	26	1.9	26	100	0	100	24	26	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1776882--1776934	26	2.0	26	92	0	88	28	24	18	28	1.98
1778487--1778539	26	2.0	26	92	0	88	28	24	18	28	1.98
1777617--1780089	891	2.7	900	86	3	3492	26	24	23	25	2.00
1780166--1780240	26	2.9	26	93	0	132	28	28	17	26	1.98
1781095--1781147	26	2.0	26	92	0	88	28	24	18	28	1.98
1780192--1783009	903	3.1	892	85	5	3734	26	24	23	25	2.00
1781997--1782073	26	3.0	26	98	0	145	24	28	19	27	1.99
1781095--1782979	929	2.0	930	86	3	2663	26	24	23	25	2.00
1782927--1782979	26	2.0	26	89	7	81	26	24	20	28	1.99
1784127--1784179	26	2.0	26	92	0	88	28	24	18	28	1.98
1784948--1785000	26	2.0	26	96	0	97	30	28	16	24	1.97
1785803--1785855	26	2.0	26	85	0	70	30	26	16	26	1.97
1785973--1786024	26	2.0	25	92	3	86	26	23	19	30	1.98
1789393--1789444	26	2.0	26	88	7	79	32	23	13	30	1.93
1791127--1791177	26	2.0	26	92	0	84	31	19	17	31	1.95
1791567--1791619	26	2.0	26	100	0	106	26	26	20	26	1.99
1791427--1792823	711	2.0	698	86	3	1980	25	22	24	26	2.00
1793165--1793217	26	2.0	26	96	0	97	30	28	16	24	1.97
1794282--1794333	26	2.0	26	96	0	95	30	23	21	25	1.99
1793995--1794403	226	1.8	226	90	1	658	18	29	28	24	1.98
1794207--1795954	893	2.0	894	87	3	2521	25	24	24	25	2.00
1795200--1796678	712	2.1	711	88	3	2222	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796784--1796834	26	2.0	26	100	0	102	27	25	19	27	1.99
1796708--1797132	226	1.9	226	88	0	652	17	29	28	24	1.97
1797036--1799865	723	4.0	716	87	3	4025	26	23	23	26	2.00
1800049--1800101	26	2.0	26	92	0	88	28	26	20	24	1.99
1800936--1800988	26	2.0	26	100	0	106	26	26	20	26	1.99
1801990--1802042	26	2.0	26	96	0	97	26	24	20	28	1.99
1802879--1802931	26	2.0	26	92	0	88	30	26	16	26	1.97
1800962--1804716	882	4.2	881	83	7	4614	24	25	24	24	2.00
1804473--1804846	163	2.3	160	85	5	486	18	28	29	23	1.98
1804820--1804870	26	2.0	26	96	0	93	25	25	19	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129