genome.fa.s24.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  24  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3281637--3284733	862	3.5	877	85	6	4117	24	24	24	26	2.00
3284732--3284777	15	3.5	15	67	32	50	17	54	15	13	1.71
3284731--3284776	24	1.9	24	100	0	92	17	54	15	13	1.71
3284349--3285194	461	1.8	462	92	0	1426	22	24	25	26	2.00
3286496--3286548	26	2.0	26	92	0	88	26	26	20	26	1.99
3288247--3288298	26	2.0	26	96	0	95	30	21	21	26	1.98
3289130--3289182	26	2.0	26	92	0	88	24	24	22	28	2.00
3287405--3290786	870	3.8	889	86	4	4444	25	24	23	25	2.00
3290026--3291489	712	2.1	712	90	2	2303	26	24	23	25	2.00
3291613--3291665	26	2.0	26	100	0	106	26	26	20	26	1.99
3290749--3293448	901	3.0	897	88	2	3955	25	24	24	25	2.00
3294885--3294934	26	1.9	26	100	0	100	24	26	20	30	1.98
3295780--3295832	26	2.0	26	96	0	97	26	24	20	28	1.99
3294043--3297416	901	3.8	896	88	3	4788	25	24	24	25	2.00
3297390--3297442	26	2.0	26	88	0	79	26	20	22	30	1.98
3296671--3298161	745	2.0	745	89	1	2294	26	24	23	25	2.00
3298294--3298346	26	2.0	26	85	0	70	30	24	18	26	1.98
3298927--3298976	26	1.9	26	95	0	91	22	26	20	32	1.98
3298131--3299373	631	2.0	631	88	1	1830	22	24	26	26	2.00
3299820--3299870	26	2.0	26	92	0	84	27	25	17	29	1.98
3301607--3301659	26	2.0	26	88	0	79	30	22	18	28	1.98
3298741--3303306	895	5.1	894	89	1	6327	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3302512--3302564	26	2.0	26	96	0	97	28	24	20	26	1.99
3302539--3304007	720	2.0	717	87	1	2073	27	24	23	25	2.00
3304134--3304186	26	2.0	26	85	0	70	26	22	20	30	1.98
3305484--3308745	864	3.7	864	85	4	4024	26	23	24	25	2.00
3316310--3317803	702	2.1	705	86	5	2063	26	24	23	26	2.00
3319638--3319688	26	2.0	26	92	7	86	27	25	19	27	1.99
3317046--3323980	902	7.9	880	83	6	8063	25	24	23	25	2.00
3320539--3320591	26	2.0	26	88	0	79	28	22	18	30	1.98
3323194--3323246	26	2.0	26	96	0	97	30	24	16	28	1.97
3324041--3324066	11	2.4	11	100	0	52	19	30	30	19	1.96
3323220--3324717	724	2.1	717	89	2	2286	26	23	24	25	2.00
3324821--3324873	26	2.0	26	92	0	88	24	24	20	30	1.99
3325713--3325765	26	2.0	26	96	0	97	28	26	18	26	1.98
3323934--3330589	892	7.4	899	86	4	8993	25	25	24	25	2.00
3328394--3328420	13	2.1	13	100	0	54	14	33	22	29	1.94
3329267--3329317	26	2.0	26	96	0	93	33	25	11	29	1.91
3330165--3330217	26	2.0	26	92	0	88	26	26	20	26	1.99
3329779--3331398	809	2.0	808	85	4	2189	23	25	25	25	2.00
3331873--3331925	26	2.0	26	96	0	97	28	26	18	26	1.98
3332753--3332831	26	3.0	26	86	0	122	30	25	16	27	1.97
3333672--3333724	26	2.0	26	92	0	88	28	22	20	28	1.99
3334574--3334626	26	2.0	26	92	0	88	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3335476--3335526	26	2.0	25	92	3	84	31	25	13	29	1.94
3336360--3336412	26	2.0	26	100	0	106	30	26	16	26	1.97
3339967--3340019	26	2.0	26	96	0	97	26	24	20	28	1.99
3342625--3342677	26	2.0	26	88	0	79	26	20	24	28	1.99
3344414--3344465	26	2.0	26	88	0	77	26	21	21	30	1.98
3345320--3345372	26	2.0	26	88	0	79	28	28	20	22	1.99
3346214--3346266	26	2.0	26	96	0	97	26	24	20	28	1.99
3330999--3347891	894	18.8	901	87	2	21719	25	24	23	25	2.00
3354869--3354921	26	2.0	26	96	0	97	26	24	22	26	2.00
3355790--3355842	26	2.0	26	96	0	97	28	26	18	26	1.98
3357098--3357150	26	2.0	26	92	0	88	28	22	22	26	1.99
3357124--3359000	718	2.6	716	89	2	2800	26	23	23	27	2.00
3360981--3361033	26	2.0	26	92	0	88	26	22	22	28	1.99
3361821--3361874	26	2.1	26	92	0	90	25	24	20	29	1.99
3362710--3362760	26	2.0	26	96	0	93	29	29	13	27	1.94
3361972--3365843	869	4.3	896	85	4	5011	25	24	23	25	2.00
3365368--3365420	26	2.0	26	85	0	70	28	22	16	32	1.96
3366114--3366166	26	2.0	26	85	0	70	28	18	20	32	1.97
3365086--3366577	738	2.0	745	86	4	2112	21	26	26	25	2.00
3367003--3367055	26	2.0	26	92	0	88	28	24	18	28	1.98
3365840--3368749	894	3.3	890	86	2	3986	24	25	24	25	2.00
3369490--3369540	26	2.0	26	88	7	77	29	23	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3370383--3370433	26	2.0	26	96	0	93	29	29	13	27	1.94
3370034--3370935	453	2.0	445	83	2	1140	24	27	24	23	2.00
3371571--3371623	26	2.0	26	100	0	106	26	26	20	26	1.99
3371000--3375106	885	4.6	889	84	4	5097	26	24	23	25	2.00
3373347--3373399	26	2.0	26	92	0	88	26	22	20	30	1.98
3374239--3374291	26	2.0	26	96	0	97	26	24	20	28	1.99
3378243--3378295	26	2.0	26	96	0	97	24	26	22	26	2.00
3380010--3380062	26	2.0	26	92	0	88	28	26	16	28	1.97
3379139--3383376	892	4.8	892	87	3	5620	26	24	23	25	2.00
3381798--3381848	26	2.0	26	92	0	84	29	23	19	27	1.98
3383045--3383101	23	2.5	23	91	0	96	31	15	7	45	1.73
3383045--3383108	23	2.8	22	83	9	83	31	17	9	42	1.81
3383569--3383667	26	3.8	26	94	0	171	27	25	18	29	1.98
3386448--3386500	26	2.0	26	88	0	79	28	22	18	30	1.98
3385296--3388194	894	3.3	888	85	3	3876	25	24	24	25	2.00
3389482--3390382	453	2.0	445	84	1	1172	24	27	24	23	2.00
3390448--3394533	885	4.6	888	83	5	4744	26	24	23	25	2.00
3393691--3393743	26	2.0	26	92	0	88	28	24	18	28	1.98
3399459--3399511	26	2.0	26	92	0	88	28	26	16	28	1.97
3398587--3401280	898	3.0	893	87	2	3762	25	24	24	25	2.00
3401993--3402045	26	2.0	26	92	0	88	24	24	20	30	1.99
3402840--3402909	26	2.7	26	95	0	131	27	25	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3403768--3403820	26	2.0	26	88	0	79	28	22	18	30	1.98
3402381--3421848	902	21.4	903	77	9	15713	25	24	23	25	2.00
3404662--3404712	26	2.0	26	96	0	93	29	21	19	29	1.98
3406423--3406483	26	2.4	26	86	5	81	29	27	16	26	1.97
3408377--3408429	26	2.0	26	92	0	88	26	26	20	26	1.99
3408052--3421848	892	15.3	901	74	10	8999	25	24	24	25	2.00
3411079--3411131	26	2.0	26	100	0	106	26	26	20	26	1.99
3411979--3412050	25	2.8	26	89	4	119	29	26	18	26	1.98
3412898--3412950	26	2.0	26	96	0	97	28	26	20	24	1.99
3413792--3413844	26	2.0	26	100	0	106	26	26	20	26	1.99
3408052--3421840	898	15.2	892	78	9	11618	25	24	24	25	2.00
3408106--3416804	860	9.8	865	83	7	9114	25	25	24	25	2.00
3415515--3415567	26	2.0	26	96	0	97	26	24	20	28	1.99
3416405--3416455	26	2.0	26	92	0	84	29	25	15	29	1.96
3416625--3416980	176	2.0	177	91	0	579	27	23	18	31	1.97
3419261--3419311	26	2.0	26	96	0	93	29	25	17	27	1.98
3421049--3421101	26	2.0	26	92	0	88	26	26	18	28	1.98
3422570--3422833	142	1.9	142	81	3	325	21	30	25	22	1.99
3422809--3422859	26	2.0	26	96	0	93	29	19	23	27	1.98
3423704--3423753	26	1.9	26	95	0	91	24	26	22	28	1.99
3424544--3424593	26	1.9	26	100	0	100	24	26	20	30	1.98
3424096--3426716	889	2.9	885	85	4	3368	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3426330--3426379	26	1.9	26	91	0	82	28	26	18	28	1.98
3428039--3428091	26	2.0	26	92	0	88	28	24	18	28	1.98
3429619--3430039	183	2.3	184	86	2	596	23	28	27	20	1.99
3429961--3430008	25	1.9	25	100	0	96	25	29	20	25	1.99
3430867--3430920	26	2.1	26	89	0	81	27	22	20	29	1.98
3432630--3432682	26	2.0	26	96	0	97	26	24	22	26	2.00
3429986--3436979	889	7.9	876	82	6	8010	25	24	24	25	2.00
3435312--3435364	26	2.0	26	92	7	90	30	26	16	26	1.97
3436171--3438409	720	3.1	719	89	1	3344	26	24	23	25	2.00
3438521--3438573	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129