genome.fa.s24.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  15  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2195851--2195907	26	2.2	26	87	0	87	33	19	19	28	1.96
2198651--2198701	26	2.0	26	84	7	68	33	15	25	25	1.95
2197017--2205766	896	9.8	898	84	5	11002	25	24	24	25	2.00
2201298--2201350	26	2.0	26	89	7	81	32	16	20	30	1.95
2204845--2204897	26	2.0	26	88	0	79	28	16	24	30	1.97
2207099--2207448	159	2.2	158	82	1	412	22	28	29	20	1.98
2208122--2208174	26	2.0	26	96	0	97	26	18	26	28	1.98
2209013--2209065	26	2.0	26	88	0	79	28	16	24	30	1.97
2209152--2209183	14	2.1	16	88	11	50	18	34	15	31	1.93
2207262--2216461	903	10.4	900	84	5	10867	25	23	25	25	2.00
2213380--2213432	26	2.0	26	100	0	106	26	20	26	26	1.99
2215186--2215238	26	2.0	26	96	0	97	26	18	26	28	1.98
2216089--2216167	26	3.0	26	94	0	140	27	20	24	27	1.99
2216506--2216558	26	2.0	26	96	0	97	26	18	24	30	1.98
2218242--2218292	26	2.0	26	84	0	66	27	17	23	31	1.97
2219141--2219190	26	1.9	26	91	0	82	30	16	24	30	1.96
2219141--2219196	26	2.2	26	86	0	76	28	17	23	30	1.97
2220909--2220987	26	3.0	26	94	0	140	29	18	24	27	1.98
2223594--2223645	26	2.0	26	96	0	95	34	21	19	25	1.96
2217492--2227312	895	11.0	889	82	6	10380	25	23	24	26	2.00
2224489--2224541	26	2.0	26	96	0	97	26	22	26	24	2.00
2226554--2228055	760	2.0	758	86	3	2121	24	23	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2228779--2228831	26	2.0	26	96	0	97	26	18	26	28	1.98
2229679--2229731	26	2.0	26	92	0	88	26	20	26	26	1.99
2227314--2231377	903	4.5	902	86	2	5583	24	23	25	26	2.00
2230582--2230634	26	2.0	26	88	0	79	26	16	24	32	1.97
2232161--2232210	26	1.9	26	87	0	73	30	12	30	28	1.92
2232391--2232424	4	8.5	4	93	0	59	0	23	73	2	0.97
2233076--2233154	26	3.0	26	90	0	122	29	20	24	26	1.99
2232159--2234027	923	2.0	927	85	4	2524	25	24	24	25	2.00
2234460--2234512	26	2.0	26	92	0	88	30	20	22	26	1.98
2234540--2234847	171	1.8	171	85	1	438	21	26	31	20	1.98
2235523--2235572	25	2.0	25	92	0	82	32	16	24	28	1.96
2237297--2237349	26	2.0	26	92	0	88	24	20	24	30	1.99
2238202--2238254	26	2.0	26	96	0	97	28	20	24	26	1.99
2237079--2241805	905	5.3	890	83	6	5628	25	24	24	25	2.00
2240879--2240931	26	2.0	26	92	0	88	26	18	28	26	1.98
2242817--2242869	26	2.0	26	92	0	88	30	20	22	26	1.98
2244570--2244619	26	1.9	26	100	0	100	28	22	28	22	1.99
2242200--2245722	863	4.0	854	82	8	3771	25	24	24	25	2.00
2245470--2246124	325	2.0	324	81	5	770	25	25	30	19	1.98
2246700--2246752	25	2.1	26	92	3	90	28	18	24	28	1.98
2248434--2248486	26	2.0	26	92	7	90	26	16	26	30	1.97
2246164--2251824	902	6.4	863	80	10	5342	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2251123--2251175	26	2.0	26	92	0	88	26	16	26	30	1.97
2253270--2253320	26	2.0	26	92	0	84	29	21	19	29	1.98
2254017--2254069	26	2.0	26	88	0	79	26	28	22	22	1.99
2254904--2254955	26	2.0	26	92	0	86	28	28	17	25	1.97
2255785--2255837	26	2.0	26	92	7	90	30	26	16	26	1.97
2257542--2257594	26	2.0	26	92	0	88	26	22	20	30	1.98
2258449--2258527	26	3.0	26	92	0	122	34	18	20	26	1.96
2261097--2261149	26	2.0	26	81	0	61	26	28	20	24	1.99
2265513--2265562	26	1.9	26	100	0	100	24	28	20	28	1.99
2266404--2266456	26	2.0	26	96	0	97	26	24	20	28	1.99
2267286--2267338	26	2.0	26	96	0	97	28	26	18	26	1.98
2268007--2268059	26	2.0	26	96	0	97	26	24	20	28	1.99
2269373--2269424	26	2.0	26	88	0	77	53	15	9	21	1.70
2269804--2269856	26	2.0	26	100	0	106	26	26	20	26	1.99
2270471--2270533	26	2.4	26	94	0	108	26	26	17	28	1.98
2272174--2272228	26	2.1	26	96	0	101	27	25	18	29	1.98
2273067--2273114	25	1.9	25	91	0	78	22	27	22	27	1.99
2274868--2274918	26	2.0	26	96	0	93	29	23	19	27	1.98
2275771--2275823	26	2.0	26	92	0	88	26	26	20	26	1.99
2276673--2276725	26	2.0	26	96	0	97	28	22	20	28	1.99
2277577--2277629	26	2.0	26	92	0	88	26	24	24	24	2.00
2271327--2291622	902	22.5	899	80	7	20067	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2279379--2279431	26	2.0	26	96	0	97	26	24	20	28	1.99
2280270--2280322	26	2.0	26	92	0	88	26	22	22	28	1.99
2282948--2282998	26	1.9	27	88	4	77	25	27	17	29	1.98
2283847--2283899	26	2.0	26	92	0	88	26	22	22	28	1.99
2284956--2285008	26	2.0	26	96	0	97	28	26	20	24	1.99
2284787--2291622	891	7.7	887	83	5	7653	25	24	24	25	2.00
2287657--2287708	25	2.0	26	88	3	79	26	21	23	28	1.99
2292754--2292806	26	2.0	26	100	0	106	26	26	20	26	1.99
2293656--2293708	26	2.0	26	96	0	97	24	26	22	26	2.00
2291618--2297211	890	6.3	890	84	4	6785	25	24	24	25	2.00
2291651--2297211	887	6.2	884	84	5	6384	25	24	24	25	2.00
2296302--2296354	26	2.0	26	88	0	79	32	22	15	30	1.94
2296960--2297371	159	2.6	159	82	2	443	18	27	29	24	1.98
2297345--2297397	26	2.0	26	92	0	88	26	22	20	30	1.98
2297371--2298850	717	2.1	713	88	2	2153	26	24	23	25	2.00
2298961--2299013	26	2.0	26	85	7	72	30	20	18	30	1.97
2298252--2299955	886	1.9	883	88	1	2574	26	25	23	24	2.00
2300996--2302193	616	1.9	617	89	1	1857	27	21	22	28	1.99
2304529--2304581	26	2.0	26	92	0	88	28	18	24	28	1.98
2304962--2305016	26	2.2	26	83	6	69	29	5	14	50	1.65
2305427--2305476	26	1.9	26	95	0	91	28	20	26	26	1.99
2306123--2306175	26	2.0	26	88	0	79	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2307675--2307727	26	2.0	26	85	0	70	30	16	24	28	1.97
2306625--2307908	654	2.0	653	86	3	1809	26	26	24	22	2.00
2308568--2308619	26	2.0	26	92	0	86	32	19	15	32	1.93
2310221--2310273	26	2.0	26	92	0	88	28	22	20	28	1.99
2309915--2315489	907	6.3	868	81	8	5849	26	23	24	25	2.00
2312828--2312880	26	2.0	26	88	0	79	30	18	22	28	1.98
2314609--2314660	26	2.0	26	88	0	77	26	19	28	25	1.98
2315035--2315091	26	2.2	26	80	0	60	24	5	8	61	1.46
2315515--2315567	26	2.0	26	96	0	97	26	22	24	26	2.00
2317207--2317259	26	2.0	26	92	7	90	26	16	26	30	1.97
2318101--2318152	26	2.0	26	92	0	86	28	21	25	25	1.99
2315688--2322444	905	7.6	901	85	4	8690	25	23	24	25	2.00
2319913--2319963	26	2.0	26	96	0	93	25	19	27	27	1.99
2321692--2321741	26	1.9	26	95	0	91	32	22	22	24	1.98
2321946--2322955	514	2.0	498	89	3	1527	27	21	21	30	1.98
2323857--2323912	26	2.2	26	96	0	103	26	21	25	26	1.99
2325186--2325236	26	2.0	26	96	0	93	27	17	27	27	1.98
2324858--2327684	891	3.2	879	84	6	3492	26	24	24	25	2.00
2326954--2327006	26	2.0	26	88	0	79	30	18	22	28	1.98
2328567--2328619	26	2.0	26	89	7	81	28	16	24	30	1.97
2329465--2332060	899	2.9	890	86	3	3524	25	23	24	26	2.00
2332953--2333005	26	2.0	26	92	0	88	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2333383--2333431	19	2.6	19	96	0	89	22	18	12	46	1.82
2335620--2335671	26	2.0	26	85	7	70	23	23	26	26	2.00
2334756--2345534	902	12.0	902	81	7	11160	25	23	24	25	2.00
2340055--2340105	26	2.0	26	96	0	93	25	15	31	27	1.96
2343709--2343761	26	2.0	26	88	0	79	28	16	26	28	1.97
2346971--2347023	26	2.0	26	88	0	79	26	15	28	30	1.96
2347870--2347941	26	2.8	26	93	0	126	27	19	26	26	1.99
2348797--2348849	26	2.0	26	100	0	106	26	20	26	26	1.99
2346230--2357711	901	12.8	900	83	5	13044	25	23	24	25	2.00
2349698--2349749	26	2.0	26	96	0	95	28	19	25	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129