genome.fa.s24.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  62  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9420432--9420712	81	3.4	81	89	5	397	22	17	22	37	1.94
9420433--9420712	123	2.3	123	95	0	499	22	17	22	37	1.94
9420945--9420993	16	2.7	19	78	15	59	32	0	6	61	1.21
9421458--9421511	25	2.2	25	83	6	65	38	5	18	37	1.74
9421521--9421591	31	2.3	32	85	11	103	28	21	23	26	1.99
9422127--9422472	57	5.8	58	88	8	518	44	8	12	34	1.73
9422124--9422482	116	3.0	117	88	8	541	46	8	12	33	1.71
9422257--9422345	27	3.2	27	65	20	74	41	6	14	37	1.72
9435017--9435135	21	5.5	21	77	18	104	52	10	4	33	1.54
9435030--9435137	21	5.0	21	83	10	137	49	11	4	35	1.59
9435021--9435130	44	2.6	41	85	9	141	50	10	4	33	1.58
9435157--9435190	15	2.4	14	90	5	50	52	8	5	32	1.56
9435275--9435308	10	3.4	10	87	0	50	82	5	2	8	0.93
9435304--9435361	24	2.4	25	75	16	59	72	1	12	13	1.20
9436242--9436290	25	1.9	25	87	4	71	73	4	2	20	1.10
9436726--9436838	50	2.3	50	83	6	131	38	11	11	38	1.78
9436742--9436822	17	4.8	17	75	13	69	39	11	13	35	1.80
9436882--9436915	17	1.9	18	94	5	61	41	5	11	41	1.66
9437172--9437239	22	3.0	24	76	10	79	42	14	10	32	1.80
9437172--9437338	45	3.7	47	79	9	175	39	13	9	37	1.77
9437266--9437308	22	2.0	22	81	9	52	37	13	4	44	1.65
9439088--9439121	17	2.0	17	88	0	50	41	11	2	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9454013--9454064	27	1.9	27	92	0	86	82	0	15	1	0.75
9454013--9454064	11	4.8	11	77	13	54	82	0	15	1	0.75
9454476--9454931	246	1.9	246	92	0	770	37	16	14	30	1.90
9455174--9455246	31	2.3	32	79	6	78	34	15	20	30	1.93
9455287--9455337	22	2.3	22	93	0	84	33	19	21	25	1.97
9455503--9455830	103	3.2	101	77	8	306	35	17	14	32	1.90
9455879--9455962	33	2.5	35	76	11	93	34	15	15	34	1.89
9455503--9456034	34	15.6	34	67	12	189	34	17	15	33	1.91
9456142--9456257	60	1.9	60	85	3	162	33	24	9	32	1.87
9456239--9456345	42	2.5	42	93	0	178	33	18	13	34	1.89
9456308--9456420	60	1.9	60	88	0	172	33	19	11	35	1.88
9456793--9456848	12	4.8	11	76	10	58	80	0	17	1	0.80
9456822--9456851	10	3.0	10	95	0	51	83	0	16	0	0.65
9457204--9457251	22	2.2	22	92	0	78	35	29	8	27	1.86
9457276--9457496	37	6.0	36	80	5	244	26	15	22	35	1.94
9457272--9457500	74	3.1	73	81	3	280	26	15	21	35	1.94
9457270--9457500	111	2.1	110	82	5	295	27	15	21	35	1.94
9458022--9458402	145	2.6	144	80	7	403	33	13	13	40	1.83
9463175--9463233	30	2.1	29	87	9	86	6	6	8	77	1.11
9463176--9463233	27	2.1	27	90	6	91	6	6	8	77	1.12
9475639--9475709	33	2.2	33	81	0	88	29	15	15	39	1.88
9475957--9476055	32	3.0	32	82	2	108	33	11	18	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9477954--9478086	53	2.5	54	89	3	200	47	6	9	36	1.62
9483137--9483187	21	2.4	21	80	6	59	70	7	0	21	1.12
9489416--9489442	7	3.9	7	100	0	54	14	0	40	44	1.46
9489859--9489918	31	2.0	31	90	3	95	45	11	15	28	1.81
9495508--9495537	13	2.3	13	94	0	51	26	6	10	56	1.57
9496721--9498762	162	12.7	161	75	7	1334	32	9	14	42	1.79
9496834--9498612	477	3.7	478	76	8	1278	32	9	15	42	1.79
9496716--9498783	321	6.4	323	80	5	1803	32	9	14	42	1.78
9498508--9498843	162	2.1	162	79	8	353	35	9	13	41	1.78
9510152--9510208	16	3.6	16	75	13	64	52	5	3	38	1.41
9510856--9510899	20	2.2	20	88	4	63	31	0	2	65	1.05
9511298--9511377	30	2.7	30	78	7	83	37	7	3	51	1.48
9511322--9511385	30	2.1	30	85	0	83	39	9	3	48	1.51
9514084--9514122	11	3.5	11	85	3	51	5	17	0	76	0.96
9514140--9514175	8	4.9	8	80	19	51	0	33	0	66	0.92
9514141--9514171	14	2.2	14	100	0	62	0	32	0	67	0.91
9515659--9515709	22	2.3	22	80	6	59	29	19	23	27	1.98
9515927--9516006	33	2.4	33	82	0	106	37	17	13	31	1.89
9515985--9516042	23	2.5	23	82	0	71	34	20	17	27	1.95
9516031--9516107	33	2.3	33	86	0	100	32	15	23	28	1.95
9516469--9516549	41	2.0	41	87	0	117	34	14	17	33	1.90
9516511--9516571	32	1.9	32	86	0	86	31	16	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9516408--9516801	185	2.1	186	81	5	456	33	14	19	33	1.91
9518076--9518373	147	2.0	145	86	1	409	20	16	8	54	1.68
9518013--9518442	147	2.9	144	76	11	399	21	17	9	52	1.72
9517992--9518459	150	3.1	147	78	10	438	20	17	8	54	1.69
9520761--9520828	34	2.0	34	94	0	118	38	20	5	35	1.77
9525191--9525223	17	1.9	17	93	0	57	24	9	12	54	1.66
9527511--9527548	18	2.1	18	85	14	51	31	5	0	63	1.17
9528458--9528510	12	4.3	12	76	4	52	1	18	0	79	0.83
9528458--9528518	15	4.4	14	80	17	65	1	21	0	77	0.86
9528588--9528661	32	2.4	30	86	10	98	25	2	5	66	1.27
9528710--9528739	13	2.3	13	94	0	51	10	0	13	76	1.01
9529610--9529663	28	1.9	28	85	14	76	38	1	0	59	1.08
9529630--9529664	12	2.9	12	86	0	52	37	2	0	60	1.12
9529620--9529663	13	3.1	15	75	24	51	40	2	0	56	1.11
9532304--9532365	32	2.0	31	83	3	79	38	3	9	48	1.52
9533736--9533768	16	2.1	16	100	0	66	30	45	18	6	1.73
9535588--9535636	25	1.9	26	84	12	66	44	2	0	53	1.12
9535589--9535642	25	2.2	25	80	12	58	42	3	0	53	1.18
9537598--9537655	21	2.9	21	87	5	75	50	8	5	36	1.56
9539408--9539457	18	2.9	17	85	8	75	26	12	26	36	1.91
9539389--9539487	34	2.9	34	77	10	112	27	16	23	33	1.95
9539498--9539558	17	3.6	17	78	8	61	31	9	19	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9539858--9539904	22	2.2	22	92	3	78	55	14	0	29	1.40
9539783--9539911	44	2.9	44	77	9	111	45	14	3	36	1.61
9539844--9539973	69	1.9	69	85	0	179	48	15	4	31	1.65
9539927--9539980	22	2.5	21	79	5	63	51	18	5	24	1.67
9540878--9541007	65	2.0	65	98	0	251	33	23	7	34	1.84
9545843--9545871	14	2.1	14	93	6	51	48	13	6	31	1.69
9545856--9545927	18	3.9	18	70	5	63	52	12	5	29	1.61
9545936--9545974	20	2.0	20	100	0	78	53	10	5	30	1.56
9559469--9561068	357	4.5	356	86	1	2035	35	12	15	36	1.85
9571464--9571505	14	3.2	13	86	10	50	83	4	9	2	0.88
9571456--9571493	20	1.9	20	94	0	67	81	2	13	2	0.90
9571456--9571502	20	2.3	20	85	3	58	80	4	12	2	0.94
9571464--9571505	13	3.2	13	86	6	50	83	4	9	2	0.88
9583137--9583222	42	2.0	42	95	0	154	41	17	3	37	1.66
9583644--9583702	6	9.8	6	86	0	73	47	1	6	44	1.39
9583644--9583702	8	7.4	8	90	0	73	47	1	6	44	1.39
9583644--9583702	14	4.2	14	86	0	73	47	1	6	44	1.39
9584438--9584462	13	1.9	13	100	0	50	28	0	0	72	0.86
9585766--9585816	17	2.8	17	77	11	57	47	0	0	52	1.00
9586296--9586329	16	2.1	16	88	0	50	79	2	2	14	0.97
9588782--9588861	32	2.5	31	80	8	81	47	0	1	51	1.08
9597255--9597321	26	2.5	27	80	9	75	52	29	0	17	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9598937--9598976	16	2.5	15	88	8	53	90	2	5	2	0.62
9598939--9598977	11	3.5	11	92	3	60	89	2	5	2	0.63
9598935--9598984	14	3.5	14	81	13	57	86	2	4	8	0.78
9607262--9607302	19	2.1	20	86	4	57	14	0	63	21	1.30
9607277--9607369	31	2.8	33	85	8	136	10	0	66	22	1.22
9607281--9607332	17	3.2	17	71	18	56	9	0	69	21	1.17
9607296--9607347	23	2.3	21	76	20	52	9	0	71	19	1.13
9607569--9607606	20	2.0	20	89	5	60	34	0	5	60	1.19
9607828--9607876	25	1.9	26	91	4	82	46	2	10	40	1.49
9611252--9611303	27	1.9	27	88	7	79	25	5	38	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129