genome.fa.s24.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22966848

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   

This is table  42  of  129  ( 15374 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5695487--5700981	899	6.1	893	84	4	6681	25	24	24	25	2.00
5703679--5703730	26	2.0	26	96	0	95	30	25	17	26	1.97
5704141--5704197	26	2.2	26	83	0	69	56	14	8	21	1.65
5705492--5705886	57	6.7	57	86	7	533	33	12	8	45	1.72
5705492--5705905	117	3.5	116	87	5	580	33	12	8	45	1.72
5705925--5705987	16	3.9	15	76	12	63	77	3	6	12	1.07
5705951--5706004	27	2.0	28	85	3	74	75	3	9	11	1.15
5705923--5706070	15	9.6	15	67	22	67	73	4	4	16	1.17
5706927--5707020	18	5.2	18	72	11	50	72	2	2	23	1.06
5706945--5706997	22	2.4	22	80	0	61	73	1	0	24	0.93
5706973--5707013	15	2.8	15	85	10	50	80	4	0	14	0.87
5706947--5707047	52	1.9	53	82	11	127	71	1	0	26	0.97
5707060--5707094	11	3.1	12	88	12	56	80	0	0	20	0.72
5707062--5707096	6	5.8	6	90	10	54	80	0	0	20	0.72
5707460--5707506	1	47.0	1	82	0	58	0	0	8	91	0.42
5707256--5707486	104	2.3	98	80	14	288	27	13	12	45	1.80
5707460--5707504	17	2.6	17	92	3	72	0	0	8	91	0.43
5707460--5707506	21	2.2	21	92	3	76	0	0	8	91	0.42
5707357--5707605	123	2.0	123	90	3	394	25	12	13	48	1.78
5707612--5707722	42	2.7	42	94	1	188	32	25	18	23	1.97
5707725--5707810	41	2.1	42	93	2	147	32	23	18	25	1.97
5707655--5707791	69	2.0	70	94	1	240	32	27	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5708027--5708140	43	2.6	42	81	10	124	36	17	10	35	1.84
5708328--5708387	22	2.7	22	84	7	77	33	18	8	40	1.80
5709477--5709554	23	3.7	20	75	20	77	6	17	0	75	1.00
5709469--5709510	19	2.2	19	91	0	66	7	16	0	76	1.00
5713462--5713915	59	7.7	58	86	6	619	35	12	7	44	1.71
5713954--5714014	16	3.8	16	82	4	70	78	1	6	13	1.01
5713956--5714032	6	12.8	6	74	15	52	76	1	7	14	1.06
5713936--5714018	27	3.1	25	80	16	87	75	1	7	15	1.07
5713941--5714105	11	14.4	11	69	20	65	73	3	4	18	1.14
5713978--5714031	27	2.0	28	89	10	85	77	1	7	12	1.05
5714054--5714103	4	12.5	4	78	16	50	78	4	0	18	0.91
5713955--5714106	12	12.5	12	69	18	68	74	3	3	17	1.13
5714057--5714106	24	2.1	23	89	10	75	80	4	0	16	0.87
5713969--5714106	27	5.5	24	75	14	84	74	4	2	18	1.11
5714927--5715019	27	3.3	28	72	12	66	69	1	5	23	1.15
5714977--5715085	4	28.8	4	69	20	56	72	1	0	25	0.95
5715007--5715133	18	7.1	17	73	13	80	73	2	1	22	1.04
5714977--5715081	27	3.6	28	79	17	85	72	1	0	25	0.95
5714980--5715053	34	2.2	35	78	11	82	77	2	0	20	0.90
5715100--5715132	11	2.9	12	86	13	52	81	0	0	18	0.68
5715099--5715134	6	6.0	6	87	12	56	80	0	0	19	0.71
5715099--5715132	17	1.9	18	94	5	61	82	0	0	17	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5715472--5715524	26	2.0	26	92	0	88	30	24	18	26	1.98
5716634--5716692	26	2.2	27	82	8	68	57	8	10	23	1.59
5717801--5717853	26	2.0	26	96	0	97	28	26	18	26	1.98
5719583--5719661	26	3.0	26	98	0	149	27	26	18	26	1.98
5720506--5720586	26	3.1	26	92	1	126	23	25	20	29	1.99
5718705--5725846	928	7.8	923	84	4	8623	25	24	24	25	2.00
5721444--5721496	26	2.0	26	96	0	97	30	24	16	28	1.97
5722330--5722380	25	2.0	26	92	3	86	31	21	19	27	1.97
5723040--5723086	24	2.0	24	95	0	85	17	51	6	25	1.69
5723257--5723308	26	2.0	26	100	0	104	26	26	19	26	1.99
5724144--5724196	26	2.0	26	88	0	79	26	24	18	30	1.98
5725054--5725106	26	2.0	26	96	0	97	28	24	20	26	1.99
5725080--5726523	700	2.0	705	88	4	2167	26	23	23	25	2.00
5726654--5726703	26	1.9	26	91	0	82	26	28	18	28	1.98
5727942--5727994	26	2.0	26	88	0	79	26	24	18	30	1.98
5726980--5731297	871	4.9	868	84	4	5241	25	24	24	25	2.00
5732045--5732094	26	1.9	26	95	0	91	26	24	20	30	1.98
5733830--5733882	26	2.0	26	88	0	79	32	22	18	26	1.97
5731294--5734624	899	3.7	895	86	3	4629	26	24	23	25	2.00
5733856--5735339	719	2.1	718	90	1	2314	26	24	23	25	2.00
5735327--5735380	26	2.1	26	85	0	72	22	20	42	14	1.88
5736764--5736861	26	3.8	26	84	2	135	22	19	38	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5736822--5736871	26	1.9	26	83	0	64	22	18	42	18	1.90
5740311--5740363	26	2.0	26	96	0	97	28	26	18	26	1.98
5737644--5744675	899	7.8	903	87	2	9247	25	24	23	25	2.00
5741210--5741260	26	2.0	26	88	7	77	31	25	15	27	1.96
5742995--5743047	26	2.0	26	96	0	97	26	24	20	28	1.99
5743888--5743940	26	2.0	26	92	0	88	26	22	22	28	1.99
5746367--5746419	26	2.0	26	96	0	97	24	26	22	26	2.00
5744605--5750616	876	6.9	870	84	5	7326	25	24	23	25	2.00
5751398--5751450	26	2.0	26	96	0	97	26	24	20	28	1.99
5751509--5752862	681	2.0	675	88	3	2022	26	23	22	26	2.00
5752974--5753026	26	2.0	26	92	0	88	24	24	22	28	2.00
5753873--5753925	26	2.0	26	92	0	88	24	26	20	28	1.99
5752189--5755058	895	3.2	893	84	6	3511	24	24	24	25	2.00
5754782--5754834	26	2.0	26	100	0	106	26	26	20	26	1.99
5759104--5759156	26	2.0	26	88	0	79	30	24	16	28	1.97
5757312--5772474	880	17.0	891	77	10	12015	25	24	24	25	2.00
5763377--5763478	49	2.1	49	88	0	150	15	38	21	24	1.92
5765408--5765460	26	2.0	26	96	0	97	26	24	20	28	1.99
5767165--5767217	26	2.0	26	96	0	97	28	26	18	26	1.98
5768898--5768950	26	2.0	26	96	0	97	28	26	20	24	1.99
5769792--5769844	26	2.0	26	100	0	106	26	26	20	26	1.99
5770668--5770717	26	1.9	26	95	0	91	28	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5771567--5771619	26	2.0	26	100	0	106	26	26	20	26	1.99
5772598--5772911	161	2.0	161	91	2	515	25	23	23	27	2.00
5773293--5773675	159	2.4	159	82	4	425	23	26	26	22	2.00
5774497--5774549	26	2.0	26	100	0	106	26	26	20	26	1.99
5775314--5775369	26	2.2	26	93	0	94	28	21	21	28	1.99
5777120--5777172	26	2.0	26	92	0	88	28	24	20	26	1.99
5778012--5778064	26	2.0	26	96	0	97	28	26	18	26	1.98
5778902--5778954	26	2.0	26	92	0	88	28	24	20	26	1.99
5775759--5780560	892	5.4	890	88	2	6574	26	25	23	24	2.00
5782192--5782244	26	2.0	26	96	0	97	28	26	18	26	1.98
5783094--5783146	26	2.0	26	100	0	106	26	26	20	26	1.99
5781375--5783850	902	2.8	896	87	3	3395	25	24	23	26	2.00
5786433--5786485	26	2.0	26	88	0	79	28	20	20	30	1.98
5788916--5788968	26	2.0	26	88	0	79	30	24	16	28	1.97
5789047--5791764	718	3.8	714	89	2	3957	26	24	22	26	2.00
5792151--5792203	26	2.0	26	100	0	106	26	26	20	26	1.99
5792177--5794352	711	3.0	707	88	3	3180	27	23	22	26	2.00
5794482--5794534	26	2.0	26	96	0	97	26	20	20	32	1.98
5795366--5795418	26	2.0	26	100	0	106	26	26	20	26	1.99
5793605--5798039	894	5.0	894	86	3	5791	25	24	24	25	2.00
5796262--5796313	26	2.0	26	85	14	72	32	23	15	28	1.95
5797156--5797211	26	2.2	26	93	0	94	28	25	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5798172--5798225	26	2.1	26	96	0	99	25	25	20	27	1.99
5799876--5799928	26	2.0	26	96	0	97	26	20	20	32	1.98
5801209--5805915	876	5.3	871	84	5	5713	25	25	23	25	2.00
5804228--5804280	26	2.0	26	96	0	97	24	26	22	26	2.00
5805127--5805180	26	2.1	26	92	0	90	27	24	20	27	1.99
5807207--5807277	36	2.0	36	97	0	133	49	12	8	29	1.70
5807217--5807294	36	2.2	36	88	0	111	51	12	10	25	1.71
5807649--5807720	26	2.8	26	86	0	108	27	26	16	29	1.97
5809452--5809504	26	2.0	26	92	0	88	26	22	20	30	1.98
5810342--5810394	26	2.0	26	92	0	88	26	26	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129