genome.fa.s556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  1  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2732	7	390.3	7	99	0	5448	14	0	42	42	1.45
7703--7744	22	1.9	22	90	0	66	35	11	7	45	1.69
8010--8069	25	2.5	23	86	5	75	13	25	18	43	1.86
8243--8277	18	1.9	18	88	0	52	22	14	25	37	1.92
11664--11719	27	2.1	27	100	0	112	28	14	26	30	1.95
11745--11810	22	3.0	22	97	0	123	31	12	13	42	1.81
11894--11931	20	1.9	20	94	0	67	36	18	2	42	1.64
11889--11933	20	2.3	19	85	7	63	33	17	2	46	1.61
11934--11990	21	2.5	21	83	11	69	19	14	8	57	1.62
15746--15811	22	3.0	22	93	0	114	34	10	10	43	1.74
15953--15996	23	2.0	23	90	4	72	15	15	9	59	1.61
17876--17927	2	26.0	2	100	0	104	0	50	0	50	1.00
20695--20766	35	2.1	35	91	0	117	58	4	15	22	1.54
22289--22316	3	9.3	3	100	0	56	0	0	64	35	0.94
22371--22409	17	2.2	18	86	4	53	7	2	82	7	0.94
22603--22646	6	7.2	6	89	5	52	9	0	75	15	1.05
39962--40028	29	2.3	28	80	12	82	61	1	5	31	1.29
41459--41508	16	3.1	16	82	0	64	46	0	0	54	1.00
42159--42242	28	3.0	28	76	10	75	53	1	0	45	1.08
43459--43492	16	2.1	16	89	10	52	0	23	2	73	0.97
45943--46005	26	2.4	27	76	10	69	41	0	0	58	0.98
45974--46025	19	2.6	19	80	14	52	36	1	0	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46120--46182	29	2.3	28	78	10	69	36	3	3	57	1.31
46197--46275	27	2.8	29	74	14	83	46	1	2	49	1.23
46507--46592	24	3.7	22	74	20	77	45	4	1	48	1.30
50212--50249	18	2.2	18	85	4	51	28	15	0	55	1.41
50864--50890	2	13.5	2	100	0	54	51	0	0	48	1.00
52841--52891	23	2.2	24	82	3	59	43	3	0	52	1.19
52848--52901	23	2.2	26	83	12	78	44	1	1	51	1.22
52911--52966	22	2.4	24	79	8	71	41	5	1	51	1.35
52911--52981	23	3.0	24	80	10	76	42	4	2	50	1.36
52945--53000	23	2.5	23	81	13	64	44	1	3	50	1.29
52969--53027	23	2.6	22	76	10	57	44	3	1	50	1.28
53372--53466	47	2.0	49	81	8	115	57	6	3	32	1.39
53431--53480	22	2.3	21	86	3	64	68	2	0	30	1.01
53431--53507	20	3.9	20	73	17	63	66	3	1	28	1.17
53657--53715	20	2.8	21	76	7	66	57	5	1	35	1.31
53647--53725	42	1.9	41	85	12	108	56	5	3	34	1.39
53752--53821	22	3.1	22	83	4	86	57	1	4	37	1.27
54061--54102	15	2.7	16	75	17	52	52	2	4	40	1.35
66147--66201	28	1.9	29	82	10	69	45	3	1	49	1.30
71148--71207	10	6.2	10	73	13	54	65	1	1	31	1.13
71162--71204	22	2.0	22	86	9	61	67	0	0	32	0.91
71427--71459	17	2.0	17	88	5	50	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71805--71836	15	2.0	17	88	11	50	31	0	3	65	1.08
81894--81956	32	2.0	31	87	3	90	34	0	4	60	1.18
86732--86766	16	2.2	16	89	0	52	25	8	0	65	1.21
87429--87465	8	4.6	8	86	0	56	43	0	0	56	0.99
87429--87483	16	3.6	16	80	11	62	47	0	0	52	1.00
90031--90078	19	2.5	19	93	3	78	77	0	0	22	0.78
90836--91015	60	3.1	57	77	9	168	35	9	4	51	1.55
90836--91015	57	3.1	58	79	6	150	35	9	4	51	1.55
92469--92507	20	2.0	20	94	0	69	43	5	0	51	1.24
93058--93096	13	2.9	13	88	3	51	76	0	10	12	1.01
98532--98561	3	10.0	3	100	0	60	66	0	33	0	0.92
119249--120155	355	2.6	354	85	3	1236	36	11	14	36	1.84
120218--120256	17	2.3	17	90	0	60	0	10	0	89	0.48
120228--120254	11	2.5	11	100	0	54	0	7	0	92	0.38
120511--120540	15	1.9	16	93	6	53	53	20	6	20	1.67
131628--131676	2	24.5	2	87	0	71	48	4	2	44	1.33
134944--134985	16	2.6	17	85	11	61	26	2	0	71	0.98
136489--136523	2	17.5	2	87	0	52	42	0	0	57	0.99
138473--138521	16	3.3	15	80	8	55	10	0	38	51	1.36
138518--138608	29	3.1	29	79	6	85	26	3	21	48	1.66
138532--138609	29	2.7	29	84	9	97	25	2	23	48	1.63
138697--138751	14	3.9	13	77	13	56	18	1	30	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138672--138746	30	2.5	29	82	6	80	21	2	29	46	1.65
140526--140789	134	2.0	134	87	3	379	46	14	18	20	1.83
140925--140995	34	2.1	34	89	0	106	46	12	23	16	1.82
140622--142888	171	13.3	170	80	4	2197	46	12	19	22	1.82
140657--142872	342	6.5	342	84	2	2714	46	12	19	22	1.82
140622--142925	683	3.4	680	85	2	2996	46	12	19	22	1.82
143579--143674	41	2.3	42	85	5	142	34	13	16	35	1.88
143767--143806	18	2.2	18	86	0	53	37	12	22	27	1.90
144012--144041	15	2.0	15	100	0	60	46	13	20	20	1.83
149881--149932	23	2.3	23	79	0	59	26	3	25	44	1.71
150125--150204	14	5.5	14	72	12	72	20	0	31	48	1.49
150507--150565	24	2.6	22	87	10	91	50	11	0	37	1.39
150516--150564	24	2.0	24	100	0	98	48	12	0	38	1.41
151331--151377	11	4.3	11	77	20	53	12	10	53	23	1.70
151477--151518	16	2.7	15	82	10	57	4	2	4	88	0.71
157332--157368	6	6.3	6	93	6	67	16	48	18	16	1.81
168983--169028	3	15.7	3	84	13	60	63	0	2	34	1.07
171260--171294	2	17.5	2	100	0	70	0	48	0	51	1.00
171294--171324	2	15.5	2	100	0	62	48	0	0	51	1.00
173636--173661	3	8.7	3	100	0	52	69	0	30	0	0.89
174570--174669	49	2.0	50	92	1	166	37	16	8	39	1.78
177500--177537	17	2.2	18	85	4	51	0	18	10	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186052--186102	2	26.0	2	92	4	86	47	0	1	50	1.12
189300--189330	5	6.2	5	96	0	53	19	38	0	41	1.51
190973--191010	2	19.0	2	100	0	76	50	0	50	0	1.00
191657--191681	4	6.2	4	100	0	50	24	76	0	0	0.80
197396--197427	2	16.0	2	100	0	64	50	0	0	50	1.00
204596--204633	2	19.0	2	100	0	76	50	0	0	50	1.00
205260--205297	2	19.0	2	89	10	60	50	0	2	47	1.15
206378--206417	2	20.5	2	94	5	73	50	0	50	0	1.00
209344--209394	26	2.0	26	96	0	93	25	11	15	47	1.80
209409--209440	16	2.1	16	88	11	50	56	18	0	25	1.42
213323--213347	6	4.2	6	100	0	50	32	0	0	68	0.90
215092--215149	26	2.2	26	81	6	64	27	1	1	68	1.08
215159--215206	23	2.1	23	92	7	80	77	4	10	8	1.12
220797--220830	2	17.0	2	87	0	50	50	0	0	50	1.00
223653--223689	2	18.5	2	100	0	74	51	0	0	48	1.00
227241--227334	46	2.0	46	95	0	170	38	6	17	38	1.75
234164--234207	2	22.0	2	100	0	88	50	0	50	0	1.00
242304--242335	12	2.7	12	100	0	64	37	25	6	31	1.81
242393--242447	20	2.7	21	80	5	67	58	23	3	14	1.52
246542--246593	25	2.3	24	84	15	67	44	0	0	55	0.99
246546--246594	20	2.6	19	76	23	50	44	0	0	55	0.99
256803--256828	12	2.2	12	100	0	52	15	38	0	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266841--266873	17	1.9	17	88	11	50	33	3	0	63	1.10
267315--267349	2	18.0	2	94	5	63	51	0	0	48	1.00
272369--272393	3	8.3	3	100	0	50	32	32	0	36	1.58
278380--278405	2	13.0	2	100	0	52	50	0	0	50	1.00
280897--280945	22	2.2	22	100	0	98	53	0	0	46	1.00
280935--280975	8	5.2	8	85	2	57	58	0	2	39	1.11
283940--283977	6	6.3	6	96	0	67	15	65	0	18	1.27
284082--284138	29	2.0	27	86	6	78	49	0	0	50	1.00
287719--287781	32	1.9	34	83	6	85	42	3	4	49	1.39
287769--287836	15	4.6	16	69	22	51	48	1	0	50	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130