genome.fa.s556.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  92  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18067464--18067508	16	2.7	16	93	6	72	22	0	0	77	0.76
18073983--18074030	21	2.2	21	88	3	69	31	6	0	62	1.20
18080319--18080349	2	15.5	2	100	0	62	51	0	0	48	1.00
18084869--18084901	16	2.0	17	88	5	50	0	30	0	69	0.88
18085377--18085409	6	5.7	6	85	7	50	30	3	0	66	1.06
18091635--18091665	14	2.2	14	94	0	53	77	0	3	19	0.90
18093441--18093495	27	2.0	27	100	0	110	29	3	14	52	1.58
18098187--18098302	21	5.6	21	74	7	85	37	1	10	50	1.47
18098698--18098846	22	6.8	22	76	9	115	37	9	6	46	1.63
18098666--18098809	66	2.2	66	77	2	146	40	9	7	43	1.65
18098698--18098806	44	2.5	44	83	3	130	40	11	6	42	1.66
18098922--18098968	22	2.2	21	82	14	60	40	10	0	48	1.38
18098952--18098982	16	2.0	15	93	6	53	41	6	0	51	1.27
18099021--18099105	44	1.9	45	88	7	129	35	9	4	50	1.56
18099501--18099536	7	4.9	7	90	10	54	41	0	2	55	1.14
18099501--18099542	15	2.8	15	89	7	59	42	0	2	54	1.13
18099502--18099554	22	2.4	22	83	3	61	41	1	1	54	1.22
18100225--18100326	22	4.7	21	73	7	80	36	5	9	48	1.61
18100225--18100339	22	5.3	21	74	8	79	35	7	10	46	1.67
18100358--18100410	11	4.8	11	76	0	52	41	9	3	45	1.54
18100362--18100750	22	18.2	21	67	14	100	35	9	4	50	1.54
18100354--18100463	44	2.5	44	84	8	147	40	8	4	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18100360--18100476	44	2.7	44	83	6	143	40	8	4	47	1.54
18100992--18101055	22	3.0	22	79	2	67	34	12	4	48	1.62
18101604--18101637	14	2.5	13	81	9	50	67	2	0	29	1.05
18103442--18103511	34	2.1	33	86	2	95	47	2	0	50	1.16
18104312--18104344	17	1.9	17	93	0	57	27	6	3	63	1.32
18104386--18104819	223	2.0	218	85	3	582	48	13	12	25	1.76
18108350--18108400	23	2.2	23	79	6	59	45	13	13	27	1.82
18109109--18109396	144	2.0	144	92	0	477	26	11	14	47	1.78
18116223--18116262	17	2.4	17	95	0	71	40	7	12	40	1.71
18122013--18122135	51	2.5	51	83	2	151	38	14	12	34	1.84
18123627--18123671	14	3.3	14	82	14	58	64	0	0	35	0.94
18123652--18123687	18	2.0	18	89	10	56	69	0	2	27	1.02
18123627--18123689	27	2.3	27	83	2	72	65	0	1	33	1.03
18126029--18126069	16	2.6	16	80	0	55	31	0	14	53	1.41
18127105--18127134	10	3.0	10	95	0	51	43	0	0	56	0.99
18131151--18131190	21	1.9	21	84	0	53	47	0	45	7	1.31
18141180--18141283	51	2.0	51	98	0	199	24	14	15	46	1.83
18147861--18147913	15	3.3	16	81	7	63	37	0	0	62	0.96
18148113--18148162	18	2.8	18	75	0	55	58	0	0	42	0.98
18150736--18150769	2	17.0	2	100	0	68	50	0	0	50	1.00
18152484--18152527	23	2.0	23	86	4	63	36	9	15	38	1.80
18152603--18152635	14	2.2	16	89	10	52	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18153490--18153720	59	3.8	60	88	5	342	33	15	8	42	1.77
18153490--18153724	119	2.0	120	92	2	393	33	14	8	43	1.76
18153840--18153948	57	1.9	58	86	5	159	33	13	7	44	1.72
18154031--18154085	8	7.1	8	89	6	62	87	5	0	7	0.68
18154035--18154085	16	3.5	15	86	7	70	88	5	0	5	0.64
18154339--18154380	19	2.2	20	86	4	59	0	42	0	57	0.99
18154412--18154450	19	2.0	20	95	5	71	35	20	15	28	1.93
18154503--18154572	31	2.2	32	80	16	85	25	18	22	32	1.97
18155388--18155464	1	77.0	1	81	0	91	1	0	7	90	0.49
18155358--18155464	29	3.9	27	80	9	110	7	0	6	85	0.72
18155389--18155464	30	2.6	29	89	8	118	1	0	7	90	0.50
18155472--18156083	41	14.9	42	86	8	824	37	21	18	22	1.94
18157097--18157169	8	9.2	8	83	8	96	9	16	0	73	1.07
18157097--18157169	15	4.6	16	85	10	96	9	16	0	73	1.07
18157109--18157169	23	2.6	24	87	10	90	9	14	0	75	1.04
18157119--18157168	7	6.7	7	84	13	64	10	14	0	76	1.03
18164389--18164435	15	3.1	15	90	3	76	48	4	25	21	1.68
18167606--18168122	57	8.7	57	88	8	752	33	13	8	44	1.74
18167606--18168137	118	4.5	117	89	7	774	33	13	8	45	1.73
18168206--18168244	8	5.4	8	80	20	50	79	7	0	12	0.93
18168212--18168253	13	3.3	13	86	6	59	78	7	2	11	1.04
18168585--18168630	20	2.3	20	92	3	76	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18168688--18168754	32	2.1	33	83	10	86	29	19	25	25	1.98
18173513--18173578	30	2.2	30	82	12	75	19	1	30	48	1.58
18173543--18173627	30	2.8	29	80	7	89	20	1	31	47	1.58
18173601--18173640	21	1.9	21	84	0	53	15	0	35	50	1.44
18176716--18176804	27	3.2	27	62	20	65	37	14	6	41	1.72
18176413--18176988	117	4.9	115	90	6	811	33	13	8	45	1.73
18176413--18176989	60	9.7	58	87	8	806	33	13	8	45	1.73
18177070--18177108	8	5.4	8	80	20	50	79	7	0	12	0.93
18177076--18177117	13	3.3	13	86	6	59	78	7	2	11	1.04
18182373--18182438	30	2.2	30	82	12	75	19	1	30	48	1.58
18182444--18182657	30	7.4	29	71	10	109	23	0	28	48	1.55
18182578--18182657	7	10.9	7	73	12	54	20	0	35	45	1.51
18182581--18182649	37	1.9	35	91	5	111	21	0	31	46	1.52
18182594--18182657	29	2.2	30	91	2	103	20	0	32	46	1.51
18182605--18182761	14	10.9	14	73	12	104	24	1	27	46	1.60
18182605--18182702	43	2.3	42	86	8	135	22	1	28	47	1.58
18182618--18182762	59	2.5	59	77	14	158	24	1	28	45	1.61
18182634--18182758	29	4.4	28	77	9	119	24	1	26	48	1.61
18182616--18182758	73	2.0	72	86	4	198	23	1	27	46	1.61
18182849--18182902	21	2.5	22	90	6	83	57	9	9	24	1.59
18188952--18189002	25	2.0	25	100	0	102	29	19	19	31	1.97
18190472--18190496	12	2.1	12	100	0	50	32	8	36	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18197129--18197154	11	2.4	11	100	0	52	0	7	0	92	0.39
18200118--18200151	15	2.2	16	89	5	52	38	0	0	61	0.96
18202854--18202886	17	1.9	17	88	11	50	45	3	0	51	1.16
18202871--18202913	13	3.3	13	80	6	52	53	0	0	46	1.00
18202869--18202968	26	4.0	26	71	25	90	58	2	0	40	1.10
18203996--18204055	27	2.2	29	85	8	81	60	1	0	38	1.07
18204209--18204233	2	12.5	2	100	0	50	52	0	0	48	1.00
18213593--18213647	19	2.9	19	70	24	53	43	1	0	54	1.10
18214421--18214463	19	2.3	19	91	0	68	51	2	0	46	1.13
18214743--18214805	24	2.9	22	73	13	58	53	0	0	46	1.00
18216539--18216590	27	1.9	27	84	0	68	50	1	0	48	1.12
18219351--18219397	22	2.1	22	92	0	76	57	0	2	40	1.11
18230904--18230946	20	2.1	20	83	12	52	51	0	18	30	1.47
18233672--18233706	16	2.2	16	89	0	52	34	14	8	42	1.76
18236795--18236850	23	2.4	23	90	0	85	48	7	16	28	1.72
18237026--18237069	21	2.1	20	87	8	61	61	0	9	29	1.27
18237227--18237301	36	2.1	36	100	0	150	40	14	18	26	1.90
18237402--18238098	119	5.9	119	77	5	578	44	13	24	18	1.85
18237553--18237979	236	1.8	236	83	0	575	42	12	25	19	1.86
18246206--18246515	155	2.0	156	98	0	595	27	15	16	40	1.88
18247062--18247105	12	3.9	12	77	17	58	18	0	43	38	1.50
18252083--18252128	10	3.8	12	86	13	51	71	4	6	17	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18252097--18252158	17	3.6	16	78	18	63	72	1	3	22	1.08
18252097--18252163	5	13.2	5	73	20	59	73	1	2	22	1.06
18252966--18253004	3	13.7	3	84	10	55	61	0	2	35	1.10
18252966--18253043	15	5.1	15	77	18	65	56	0	6	37	1.25
18253081--18253126	19	2.6	18	80	16	51	47	10	0	41	1.38
18253021--18253128	56	1.9	56	80	12	123	49	7	3	39	1.49
18253472--18253510	20	2.0	20	100	0	78	30	20	2	46	1.64
18261685--18261745	31	2.0	31	96	0	113	42	14	4	37	1.68
18263004--18263040	10	3.8	10	85	7	58	29	0	24	45	1.53
18263087--18263141	28	2.0	28	82	3	67	32	7	16	43	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130