genome.fa.s556.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  13  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3661526--3661561	16	2.1	18	90	10	58	0	13	2	83	0.76
3665673--3665753	40	2.0	40	100	0	162	37	4	23	34	1.77
3665770--3665794	2	12.5	2	100	0	50	48	0	0	52	1.00
3665571--3666196	202	3.1	202	99	0	1238	36	8	19	36	1.82
3665875--3665955	40	2.0	40	100	0	162	37	4	23	34	1.77
3665571--3666194	200	3.1	200	99	0	1230	36	8	19	36	1.82
3666075--3666155	40	2.0	40	100	0	162	37	4	23	34	1.77
3666172--3666201	2	15.0	2	100	0	60	50	0	0	50	1.00
3670169--3670323	55	3.0	50	78	10	184	36	16	3	43	1.65
3670133--3670298	55	3.1	54	78	9	198	38	15	1	43	1.57
3670143--3670393	106	2.4	103	85	7	319	35	16	2	45	1.60
3678679--3678713	8	4.4	8	88	0	52	54	0	2	42	1.15
3679345--3679500	52	3.0	51	83	8	165	26	23	8	41	1.83
3679525--3679567	22	2.0	22	90	9	70	48	27	0	23	1.51
3679525--3679566	11	3.8	11	87	6	59	50	28	0	21	1.49
3679810--3679857	25	1.9	25	86	0	69	18	41	12	27	1.86
3680435--3680590	52	3.0	51	85	6	190	26	24	8	40	1.84
3680615--3680657	11	3.9	11	84	6	52	48	25	0	25	1.51
3680615--3680657	22	2.0	22	86	9	61	48	25	0	25	1.51
3684094--3684150	21	2.7	21	78	8	53	66	3	1	28	1.18
3684901--3684945	23	2.0	23	86	8	65	31	13	11	44	1.78
3684902--3684951	23	2.3	22	83	13	59	26	12	10	52	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3685070--3685109	22	1.9	22	90	10	66	80	0	20	0	0.72
3685111--3685169	9	6.4	9	76	20	52	74	1	1	22	1.00
3685111--3685169	18	3.2	19	75	13	61	74	1	1	22	1.00
3685340--3685524	99	1.9	99	86	6	268	43	19	9	27	1.81
3685340--3685524	50	3.7	50	81	8	211	43	19	9	27	1.81
3685452--3685575	63	2.0	64	91	1	205	43	20	8	28	1.80
3685516--3685876	49	7.4	50	84	5	416	41	18	10	29	1.84
3685516--3685873	195	1.8	196	86	4	517	41	18	10	29	1.84
3691230--3691384	43	3.6	43	73	13	147	23	12	16	46	1.82
3691350--3691420	29	2.4	29	80	0	79	25	15	9	49	1.75
3691692--3691748	5	11.4	5	82	14	57	19	0	1	78	0.83
3691685--3691726	16	2.7	16	85	10	52	19	0	0	80	0.70
3691685--3691747	20	3.1	19	82	11	72	20	0	1	77	0.85
3692757--3692783	8	3.4	8	100	0	54	88	0	0	11	0.50
3697962--3698034	26	2.8	27	73	8	71	57	0	1	41	1.07
3699743--3699808	25	2.8	23	73	21	57	50	12	3	34	1.55
3699847--3699938	18	5.1	18	72	16	75	53	7	3	35	1.46
3699871--3699938	18	3.7	18	75	16	77	54	7	1	36	1.37
3699876--3699932	16	3.3	16	73	17	60	54	7	1	36	1.38
3702633--3702694	5	10.7	6	80	13	60	48	1	0	50	1.10
3702635--3702673	19	2.1	18	95	4	69	53	0	0	46	1.00
3702629--3702755	46	2.7	46	77	11	127	49	0	2	47	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3702800--3702844	17	2.6	17	82	10	56	55	0	0	44	0.99
3702835--3702894	21	3.0	21	74	11	54	58	6	0	35	1.24
3705065--3705110	12	3.5	13	80	14	51	21	0	2	76	0.90
3705066--3705110	18	2.5	18	83	16	58	22	0	2	75	0.91
3705115--3705148	16	2.1	16	88	0	50	58	0	0	41	0.98
3711853--3711903	18	2.6	19	81	12	59	60	0	5	33	1.21
3713277--3713344	21	3.2	20	76	12	66	55	5	4	33	1.44
3713284--3713349	20	3.2	19	74	14	60	53	6	4	36	1.46
3713322--3713368	18	2.5	20	79	6	53	63	4	0	31	1.13
3713776--3713805	16	1.9	16	93	6	53	66	3	0	30	1.07
3712226--3714001	939	1.9	932	80	6	2048	51	5	10	32	1.60
3715025--3715072	10	4.8	10	81	0	51	37	4	10	47	1.57
3720010--3720057	24	2.0	24	83	0	60	60	2	0	37	1.09
3720338--3720868	216	2.4	215	78	6	521	53	6	8	31	1.57
3721135--3721640	225	2.3	219	79	7	511	52	6	10	31	1.59
3721349--3721774	214	2.0	220	79	7	469	52	5	10	31	1.59
3722142--3722193	22	2.4	21	80	3	59	50	3	1	44	1.31
3727486--3727614	28	5.0	25	74	6	64	46	24	4	24	1.71
3727501--3727630	28	4.9	27	77	8	92	47	22	3	26	1.68
3727567--3727635	28	2.5	28	88	4	95	50	23	2	23	1.62
3727583--3727649	28	2.4	28	78	9	73	49	22	7	20	1.74
3728131--3728572	186	2.4	186	82	4	536	40	13	13	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3728735--3729419	186	3.7	185	80	6	767	38	12	12	35	1.81
3728702--3729419	372	1.9	372	85	2	985	39	12	12	35	1.81
3735834--3735913	35	2.3	34	76	6	81	40	13	10	36	1.79
3735925--3736048	34	3.7	34	80	1	115	37	10	13	37	1.80
3736150--3736193	23	1.9	23	85	0	61	63	9	4	22	1.42
3737972--3738054	43	2.0	43	87	2	123	31	8	12	48	1.70
3738856--3738897	21	1.9	22	90	9	68	26	2	0	71	0.98
3738944--3739142	110	1.9	107	82	9	253	44	9	8	37	1.68
3740518--3740711	93	2.1	92	93	2	327	42	6	7	44	1.57
3744012--3744230	64	3.4	64	92	0	330	37	15	15	31	1.89
3744059--3744158	31	3.2	31	65	16	78	35	20	15	30	1.93
3744090--3744191	33	3.2	33	66	20	97	37	15	16	30	1.90
3758294--3758324	2	15.5	2	100	0	62	0	0	48	51	1.00
3762002--3762033	2	16.0	2	93	0	55	46	0	3	50	1.17
3764479--3764507	12	2.4	12	100	0	58	13	41	6	37	1.72
3765411--3765441	15	2.0	16	93	6	55	51	0	0	48	1.00
3765878--3765920	17	2.4	17	84	7	50	30	20	0	48	1.50
3766568--3766823	129	2.0	130	85	6	353	43	6	4	45	1.48
3766589--3766868	129	2.2	128	80	7	273	45	6	3	44	1.47
3767673--3767713	22	1.9	21	90	5	64	39	0	0	60	0.96
3774020--3774047	2	14.0	2	100	0	56	50	0	0	50	1.00
3779555--3779581	10	2.7	10	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3782025--3782053	2	14.5	2	100	0	58	51	0	0	48	1.00
3787803--3787912	54	2.0	54	87	0	157	59	2	6	31	1.37
3790559--3790616	24	2.4	24	82	0	71	44	1	12	41	1.51
3793225--3793277	26	2.0	27	82	7	65	60	5	0	33	1.20
3794163--3794241	25	3.2	26	73	10	67	35	8	36	18	1.83
3794163--3794288	50	2.6	50	82	5	132	33	8	35	22	1.85
3794212--3794264	25	2.1	25	89	0	79	32	7	37	22	1.82
3795274--3795319	20	2.3	21	79	17	53	54	0	0	45	0.99
3795377--3795431	28	2.0	28	85	0	74	50	3	1	43	1.30
3795620--3795694	21	3.7	21	76	11	68	54	2	0	42	1.14
3795658--3795713	24	2.3	24	84	6	69	57	3	3	35	1.34
3795652--3795724	21	3.4	20	75	15	56	50	4	2	42	1.35
3795655--3795764	43	2.6	42	80	11	100	52	2	2	41	1.30
3799239--3799390	74	2.1	74	98	1	297	52	5	1	40	1.32
3799239--3799427	74	2.6	74	89	3	222	51	5	1	40	1.35
3799700--3799734	3	11.7	3	100	0	70	31	0	0	68	0.90
3800276--3800316	21	1.9	21	85	5	55	39	4	2	53	1.35
3802283--3802316	9	3.8	9	100	0	68	47	23	29	0	1.52
3812969--3812998	3	10.0	3	92	0	51	63	0	36	0	0.95
3816113--3816141	2	14.5	2	100	0	58	51	0	0	48	1.00
3827411--3827450	14	2.7	14	84	7	53	42	0	0	57	0.98
3828520--3828553	17	2.1	16	88	5	50	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3833668--3833714	18	2.6	17	83	6	58	8	10	8	72	1.29
3840681--3840926	114	2.1	117	93	3	421	35	36	5	22	1.78
3841584--3841638	24	2.3	24	90	3	85	43	5	1	49	1.36
3848086--3848122	18	2.1	18	89	0	56	37	5	51	5	1.48
3852426--3852455	13	2.3	13	94	0	51	60	0	0	40	0.97
3852428--3852466	19	2.1	19	85	9	53	61	0	0	38	0.96
3853741--3853774	3	11.3	3	100	0	68	32	0	0	67	0.91
3869294--3869325	16	2.0	16	93	0	55	15	6	28	50	1.68
3869555--3869604	26	1.9	25	84	15	66	50	4	2	44	1.32
3872408--3872489	22	3.7	22	72	15	71	51	2	0	46	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130