genome.fa.s556.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  62  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13097012--13097061	23	2.1	22	85	10	64	52	8	2	38	1.43
13101293--13101573	61	4.8	60	80	15	324	35	11	6	46	1.64
13101293--13101567	118	2.4	116	87	7	338	35	11	5	47	1.64
13101599--13101662	9	7.5	8	77	19	67	82	0	3	14	0.78
13101594--13101648	7	8.3	7	76	8	53	83	0	1	14	0.73
13101594--13101662	26	2.7	25	86	13	104	82	0	2	14	0.78
13101594--13101674	11	7.2	11	70	19	51	80	0	2	17	0.82
13101594--13101661	17	3.9	18	74	18	56	82	0	2	14	0.79
13102838--13103323	242	2.0	242	99	0	954	24	22	16	37	1.93
13104592--13104704	57	1.9	59	84	10	153	36	7	5	50	1.54
13104713--13104745	8	4.1	8	85	14	50	87	0	0	12	0.53
13104708--13104761	16	3.0	17	84	15	65	79	0	5	14	0.90
13104780--13104806	4	6.8	4	100	0	54	74	0	0	25	0.83
13105798--13105848	16	3.4	16	82	10	56	54	5	1	37	1.36
13105925--13105956	9	3.4	9	95	4	55	87	0	12	0	0.54
13106069--13106112	21	2.1	21	82	0	52	40	9	6	43	1.63
13106430--13106468	19	2.1	19	85	0	51	51	0	5	43	1.24
13107026--13107064	20	2.0	20	95	5	71	20	12	0	66	1.24
13108047--13108117	31	2.3	30	81	13	83	39	0	0	60	0.97
13108045--13108093	25	1.9	26	83	4	64	38	0	0	61	0.96
13108898--13108939	6	7.0	6	86	8	50	19	0	2	78	0.86
13108897--13108931	17	2.1	17	89	5	54	17	0	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13109895--13109940	22	2.1	22	84	8	58	69	2	2	26	1.11
13110318--13110374	19	3.0	18	76	19	62	47	3	0	49	1.18
13115427--13115451	13	1.9	13	100	0	50	32	8	20	40	1.81
13115987--13116053	34	2.0	34	87	0	98	25	13	13	47	1.79
13119527--13119565	17	2.3	17	100	0	78	46	20	23	10	1.81
13121594--13121640	22	2.1	22	84	0	58	46	0	2	51	1.13
13126362--13126428	2	33.5	2	96	0	125	47	0	1	50	1.10
13137017--13137102	41	2.1	41	93	0	145	43	18	8	30	1.79
13137179--13137264	41	2.1	41	88	0	127	45	16	5	32	1.71
13136984--13137452	162	2.9	158	93	1	796	41	12	9	37	1.75
13137336--13137421	41	2.1	41	93	0	145	44	17	6	31	1.75
13137639--13137703	29	2.2	30	81	10	80	49	1	0	49	1.10
13137635--13137708	29	2.8	26	75	16	71	50	1	0	48	1.09
13139812--13139913	36	2.8	35	83	7	123	37	12	4	45	1.64
13139849--13139902	18	3.0	18	71	10	56	31	12	5	50	1.64
13140551--13140605	24	2.3	24	74	0	56	29	25	7	38	1.83
13141104--13141297	6	34.8	5	69	21	72	21	8	1	69	1.21
13141132--13141202	29	2.4	29	86	4	90	25	5	2	66	1.27
13141151--13141261	29	3.8	29	77	17	97	19	9	1	68	1.27
13141183--13141291	54	2.1	50	78	15	116	18	11	0	70	1.15
13141184--13141294	17	6.4	17	74	17	86	18	10	0	71	1.14
13141212--13141294	34	2.3	35	84	13	100	18	9	0	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13144778--13144992	107	2.0	107	100	0	430	29	13	13	44	1.80
13158058--13158132	32	2.3	33	86	2	98	40	1	28	30	1.65
13160877--13160905	2	15.0	2	92	7	51	48	0	0	51	1.00
13161946--13162012	19	3.3	19	73	18	53	67	1	0	31	1.00
13161957--13162012	10	6.0	9	78	21	53	66	1	0	32	1.03
13162713--13162766	2	28.5	2	74	10	51	50	0	0	50	1.00
13162691--13162765	11	6.9	11	79	7	82	48	0	1	50	1.09
13164743--13164776	16	2.0	18	88	11	54	58	0	0	41	0.98
13164936--13164982	24	1.9	25	83	12	62	68	0	0	31	0.90
13164958--13164988	16	1.9	16	93	0	53	67	0	0	32	0.91
13166114--13166141	6	4.7	6	100	0	56	14	17	17	50	1.79
13172154--13172217	24	2.7	22	75	17	58	34	1	0	64	1.03
13172226--13172252	12	2.2	12	100	0	54	33	11	0	55	1.35
13189306--13189348	18	2.3	18	84	4	50	51	18	16	13	1.77
13200407--13200578	60	2.8	61	76	9	165	34	4	19	40	1.73
13203331--13203375	22	2.0	22	95	0	81	28	6	4	60	1.42
13206828--13206886	18	3.4	17	75	13	57	76	0	10	13	1.02
13208255--13208361	43	2.4	46	80	11	118	29	11	13	45	1.77
13208675--13208855	44	4.1	43	81	8	177	33	9	16	40	1.81
13208713--13208827	21	5.3	20	72	12	86	30	10	18	40	1.84
13208865--13209121	89	2.9	89	87	1	363	32	10	11	45	1.73
13208946--13209007	28	2.2	28	82	5	81	33	12	11	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13209016--13209068	19	2.9	18	78	13	56	28	5	15	50	1.66
13209027--13209122	28	3.5	28	78	16	96	33	7	11	47	1.67
13208965--13209176	10	23.3	9	64	27	51	31	11	10	46	1.74
13209129--13209180	19	2.7	20	82	11	72	26	13	9	50	1.72
13209129--13209277	18	8.3	19	70	16	77	27	11	10	51	1.70
13209366--13209446	22	3.7	22	70	18	60	28	9	16	45	1.79
13209909--13209948	21	2.0	20	90	5	62	57	10	12	20	1.63
13211601--13212069	132	3.7	127	76	13	445	39	6	14	39	1.71
13211917--13212201	125	2.3	126	81	6	335	38	8	12	40	1.73
13214314--13214386	23	3.0	23	75	16	60	42	12	12	32	1.80
13219361--13219408	19	2.4	20	80	16	55	58	2	0	39	1.10
13220076--13220646	189	3.0	189	93	0	964	39	18	12	30	1.87
13223401--13223453	27	2.0	27	92	0	88	52	0	9	37	1.34
13224625--13224672	14	3.6	14	77	5	55	54	0	0	45	0.99
13225660--13225686	14	1.9	14	100	0	54	51	0	7	40	1.30
13229179--13229419	128	1.9	128	80	5	281	43	12	9	34	1.73
13229581--13229701	24	5.3	23	76	10	90	44	1	14	39	1.54
13229643--13229723	23	3.4	24	83	8	76	43	4	13	38	1.66
13231813--13231869	25	2.3	25	84	0	78	61	12	3	22	1.46
13235550--13235638	10	8.7	10	74	22	62	71	0	2	25	0.97
13235546--13235638	22	4.4	21	76	19	88	72	0	2	25	0.96
13235601--13235656	6	9.3	6	75	21	55	78	0	1	19	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13235552--13235638	32	2.7	32	76	21	85	71	0	2	26	0.98
13235550--13235652	54	1.9	54	80	7	120	71	0	2	25	0.99
13243631--13243668	3	12.3	3	88	5	58	60	0	0	39	0.97
13243631--13243673	22	1.9	23	95	4	79	58	0	2	39	1.11
13250725--13250756	13	2.4	14	94	5	57	84	0	3	12	0.74
13251982--13252101	35	3.4	35	75	8	111	14	22	13	50	1.77
13252082--13252202	36	3.4	35	78	9	113	16	18	12	52	1.74
13252289--13252347	19	3.2	17	83	11	64	81	11	1	5	0.93
13252318--13252347	14	2.1	14	93	0	51	86	10	0	3	0.67
13252715--13252773	31	1.9	31	86	10	86	67	1	3	27	1.16
13252810--13252855	14	3.5	13	75	24	51	73	0	13	13	1.09
13253371--13253405	1	35.0	1	100	0	70	100	0	0	0	0.00
13254394--13254428	18	1.9	18	88	11	54	71	14	11	2	1.25
13255190--13255241	22	2.5	22	72	27	58	34	0	1	63	1.06
13255174--13255232	29	2.1	28	81	9	66	32	0	5	62	1.17
13256522--13256613	14	6.9	14	70	8	50	54	20	2	22	1.55
13257635--13257659	7	3.6	7	100	0	50	72	0	0	28	0.86
13267332--13267854	262	2.0	260	89	3	791	25	18	18	37	1.93
13268341--13268382	15	2.8	15	88	0	66	50	19	21	9	1.75
13273492--13273522	3	10.3	3	92	0	53	35	3	0	61	1.12
13284201--13284315	19	5.9	19	68	10	63	56	13	8	20	1.64
13284216--13284303	29	3.1	28	74	9	90	52	17	10	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13305965--13306165	102	2.0	102	87	5	291	48	2	4	44	1.36
13307076--13307122	24	2.0	24	83	8	60	51	2	0	46	1.13
13307041--13307107	19	3.7	19	66	24	54	46	1	1	50	1.19
13307092--13307170	32	2.5	32	87	8	108	45	0	1	53	1.08
13307103--13307179	32	2.5	28	79	18	91	44	1	1	53	1.17
13307425--13307453	2	14.5	2	100	0	58	51	0	0	48	1.00
13308296--13308411	57	2.1	54	81	10	128	42	7	4	45	1.52
13309076--13309235	9	16.7	9	68	13	61	58	2	2	36	1.25
13309058--13309101	20	2.2	20	87	0	61	47	2	2	47	1.27
13309072--13309110	19	2.0	20	85	5	53	48	0	2	48	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130