genome.fa.s556.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  78  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15811058--15811108	18	2.8	18	80	11	59	47	0	0	52	1.00
15811425--15811474	2	25.5	2	95	4	93	52	0	0	48	1.00
15811724--15811758	18	2.1	17	89	10	54	37	0	0	62	0.95
15813564--15813605	11	3.9	11	79	14	52	35	2	0	61	1.09
15813681--15813709	2	14.5	2	100	0	58	48	0	0	51	1.00
15813818--15813861	18	2.4	18	92	0	70	72	0	0	27	0.85
15814851--15814907	22	2.6	23	83	5	64	68	1	5	24	1.20
15814858--15814916	30	2.0	30	100	0	118	69	0	6	23	1.12
15814927--15814956	11	2.6	11	94	5	51	40	0	0	60	0.97
15815458--15815513	22	2.5	23	81	16	73	62	10	1	25	1.37
15815492--15815627	10	14.4	9	69	14	51	57	8	1	33	1.37
15815528--15815654	10	13.0	10	74	6	82	59	6	1	33	1.32
15815677--15815724	10	4.7	10	82	12	62	43	0	4	52	1.20
15815767--15815809	20	2.3	19	88	8	61	51	2	2	44	1.27
15815780--15815827	20	2.3	20	82	10	62	41	0	4	54	1.20
15815767--15815823	18	3.0	18	80	16	62	45	1	3	49	1.29
15816308--15816514	63	3.4	62	85	5	269	45	8	6	39	1.60
15816308--15816514	62	3.4	61	83	7	253	45	8	6	39	1.60
15817748--15817782	17	2.0	18	88	5	54	60	2	0	37	1.12
15819219--15819403	99	1.9	99	88	4	284	44	1	6	47	1.38
15819316--15819552	132	1.8	130	85	5	334	47	3	6	42	1.46
15819749--15819775	6	4.5	6	100	0	54	55	0	14	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15820395--15820426	15	2.1	15	94	0	55	46	0	3	50	1.17
15820233--15820475	131	1.9	126	88	5	369	46	2	5	46	1.37
15820241--15820513	131	2.1	127	82	7	329	46	1	5	45	1.38
15824076--15824109	2	17.5	2	93	6	61	47	0	0	52	1.00
15824255--15824304	21	2.4	22	76	10	59	52	0	8	40	1.31
15824882--15824920	19	2.1	19	90	9	62	69	0	30	0	0.89
15825189--15825222	3	11.7	3	93	6	61	29	0	0	70	0.87
15825254--15825291	6	6.5	6	81	6	51	21	2	0	76	0.91
15825318--15825586	59	4.7	57	84	5	319	46	5	11	36	1.64
15825465--15825498	17	2.0	17	94	0	59	50	0	0	50	1.00
15825465--15825495	16	1.9	16	93	0	53	48	0	0	51	1.00
15825317--15825590	116	2.4	115	87	3	372	45	5	10	37	1.64
15827121--15827197	22	3.5	22	98	0	145	19	31	16	32	1.94
15828822--15828877	28	2.0	29	85	3	78	35	0	8	55	1.31
15828834--15828890	28	2.1	26	84	12	71	36	0	7	56	1.27
15832295--15832348	11	4.9	11	80	14	58	33	0	0	66	0.92
15832299--15832373	12	6.3	12	76	13	50	33	0	0	66	0.92
15832422--15832452	2	15.5	2	100	0	62	48	0	0	51	1.00
15832562--15832605	18	2.4	18	80	0	52	68	0	4	27	1.09
15832597--15832646	21	2.4	22	76	10	59	52	0	8	40	1.31
15833608--15833664	22	2.6	23	83	5	64	68	1	5	24	1.20
15833615--15833673	30	2.0	30	100	0	118	69	0	6	23	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15833684--15833713	11	2.6	11	94	5	51	40	0	0	60	0.97
15833744--15833776	17	1.9	17	100	0	66	48	9	12	30	1.71
15834218--15834273	22	2.5	23	81	16	73	62	10	1	25	1.37
15834252--15834387	10	14.4	9	70	14	60	56	8	1	33	1.39
15834288--15834414	10	13.0	10	75	6	82	58	7	1	33	1.35
15834437--15834484	10	4.7	10	82	12	62	43	0	4	52	1.20
15835029--15835235	63	3.4	62	86	5	278	44	8	6	39	1.62
15836483--15836517	17	2.0	18	88	5	54	60	2	0	37	1.12
15837956--15838140	99	1.9	99	88	4	284	44	1	6	47	1.38
15838053--15838290	133	1.8	130	84	6	327	47	3	6	42	1.46
15838935--15839005	23	3.2	24	71	13	62	54	1	2	40	1.23
15839129--15839160	15	2.1	15	94	0	55	46	0	3	50	1.17
15838966--15839209	131	1.9	128	89	2	380	47	2	5	45	1.37
15838974--15839247	131	2.1	128	82	4	338	47	1	5	44	1.37
15842790--15842831	2	21.5	2	95	4	77	47	0	0	52	1.00
15842942--15842985	18	2.4	18	80	0	52	68	0	4	27	1.09
15842977--15843026	21	2.4	22	76	10	59	52	0	8	40	1.31
15843604--15843644	19	2.2	19	91	8	66	70	0	29	0	0.87
15843608--15843651	15	2.9	15	78	15	54	72	0	27	0	0.85
15843977--15844010	6	5.7	6	85	0	50	17	2	0	79	0.86
15843980--15844021	18	2.3	18	88	8	59	21	2	2	73	1.06
15844041--15844294	59	4.4	58	83	3	280	47	5	9	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15844017--15844294	116	2.4	115	81	7	310	47	6	8	37	1.59
15844190--15844228	15	2.5	15	88	12	53	43	2	0	53	1.14
15846085--15846151	28	2.4	29	77	7	75	41	0	7	50	1.30
15846995--15847338	173	2.0	170	94	1	607	27	21	21	29	1.98
15849595--15849634	11	3.7	11	87	12	57	37	0	0	62	0.95
15849584--15849646	30	2.1	31	83	13	80	39	0	0	60	0.97
15849714--15849769	2	28.5	2	96	3	105	48	0	0	51	1.00
15849881--15849924	18	2.4	18	80	0	52	68	0	4	27	1.09
15849916--15849996	21	3.6	22	71	17	60	51	0	7	40	1.30
15850727--15850768	17	2.4	18	76	11	52	64	2	0	33	1.07
15851030--15851068	17	2.3	17	90	0	60	48	5	7	38	1.54
15851445--15851687	128	1.9	125	86	5	344	46	2	5	45	1.37
15851610--15851787	100	1.8	97	86	9	263	43	2	6	47	1.42
15852770--15852801	15	2.1	15	94	0	55	46	0	3	50	1.17
15854137--15854180	21	2.1	21	83	8	54	45	4	2	47	1.35
15854464--15854494	2	15.5	2	100	0	62	51	0	0	48	1.00
15856502--15856547	2	23.5	2	95	4	85	47	0	0	52	1.00
15856660--15856703	18	2.4	18	80	0	52	68	0	4	27	1.09
15856695--15856744	21	2.4	22	76	10	59	52	0	8	40	1.31
15857509--15857542	17	2.0	17	88	11	52	67	2	0	29	1.05
15858252--15858329	21	3.6	21	77	16	70	64	6	3	25	1.35
15858344--15858460	10	11.9	10	70	11	55	54	5	1	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15858393--15858460	20	3.4	19	82	8	73	51	7	0	41	1.30
15858354--15858443	19	4.8	18	73	15	74	56	6	1	35	1.33
15858393--15858454	29	2.1	29	85	5	81	53	8	0	38	1.31
15858582--15858624	10	4.6	9	80	8	50	53	2	2	41	1.26
15858633--15858660	9	3.1	9	100	0	56	25	0	0	75	0.81
15858789--15858861	26	2.8	26	74	12	69	61	4	6	27	1.40
15859120--15859275	62	2.5	64	77	6	174	46	7	7	37	1.61
15862212--15862454	127	1.9	126	86	6	348	46	2	5	45	1.38
15862376--15862555	99	1.8	98	87	9	267	42	2	7	47	1.43
15863348--15863398	22	2.3	21	75	15	50	49	1	3	45	1.32
15863538--15863569	15	2.1	15	94	0	55	46	0	3	50	1.17
15867638--15867693	28	2.0	29	85	3	78	35	0	8	55	1.31
15867650--15867703	28	2.0	27	85	10	74	38	0	5	55	1.23
15868446--15868484	18	2.2	18	86	13	55	41	2	0	56	1.13
15869492--15869549	29	2.0	30	86	3	82	39	3	1	55	1.27
15869614--15869700	43	2.0	43	90	0	138	41	5	9	43	1.60
15873705--15873741	18	2.0	18	89	5	56	18	2	5	72	1.15
15881143--15881174	2	16.5	2	93	6	57	50	0	0	50	1.00
15882260--15882299	22	1.9	20	85	10	53	62	0	2	35	1.09
15882366--15882402	9	4.0	9	93	6	65	43	0	0	56	0.99
15885735--15885779	15	3.1	15	93	3	74	46	4	24	24	1.71
15887293--15887344	27	2.0	26	88	3	77	48	11	0	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15887503--15887549	21	2.3	21	88	3	69	38	6	6	48	1.54
15887603--15887656	16	3.5	14	81	18	63	74	7	3	14	1.18
15889765--15889804	22	1.9	20	85	10	53	7	15	0	77	0.98
15889861--15889917	30	1.9	30	86	13	82	1	29	0	68	1.00
15891634--15891674	6	7.2	6	91	5	50	78	0	0	21	0.76
15891754--15891804	26	2.0	26	84	0	66	37	15	19	27	1.92
15892174--15892207	17	1.9	18	94	5	61	20	0	0	79	0.73
15892603--15892644	17	2.4	17	80	15	50	23	2	9	64	1.35
15892659--15892774	46	2.6	44	75	5	108	36	19	10	33	1.86
15892869--15893285	50	8.3	49	76	7	279	44	14	7	33	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130