genome.fa.s556.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  41  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9863047--9863185	35	3.9	33	73	13	93	53	16	12	16	1.72
9863099--9863262	36	4.7	35	75	13	140	54	14	14	15	1.71
9863278--9863375	36	2.7	35	82	3	97	48	11	17	22	1.78
9863102--9863413	140	2.2	140	79	8	321	51	13	16	19	1.76
9863102--9863447	143	2.5	141	78	7	344	51	13	16	19	1.76
9863385--9863467	35	2.3	35	85	6	114	53	10	15	20	1.72
9863193--9863447	107	2.4	108	78	7	279	49	12	17	20	1.79
9864412--9864505	46	2.0	49	83	6	122	15	11	11	60	1.58
9870337--9870390	15	2.9	21	69	30	66	29	33	9	27	1.88
9870203--9870547	183	1.9	183	98	0	663	31	21	13	33	1.93
9874660--9874704	12	3.4	14	80	20	53	68	8	0	22	1.16
9875729--9875901	39	4.4	39	86	3	222	39	19	12	28	1.88
9875715--9875903	79	2.4	79	82	2	236	40	19	14	26	1.89
9876135--9876220	40	2.2	40	87	8	124	43	18	11	26	1.84
9888252--9888288	12	3.1	12	92	0	56	18	2	0	78	0.87
9892793--9893062	144	1.9	144	79	4	303	45	11	10	32	1.74
9898769--9898802	17	2.0	17	88	11	52	0	14	11	73	1.10
9899924--9899972	21	2.3	21	78	0	53	18	10	14	57	1.65
9900130--9900217	40	2.2	41	82	8	110	32	11	14	40	1.82
9904424--9904457	18	1.9	17	88	5	50	73	5	14	5	1.21
9906432--9906588	33	4.7	33	81	4	136	24	17	10	47	1.78
9907548--9907596	26	1.9	25	87	4	71	22	2	2	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9907859--9907907	22	2.3	21	76	10	55	65	16	4	14	1.42
9907871--9907914	22	2.1	21	83	8	54	65	18	2	13	1.36
9914861--9914887	3	9.0	3	100	0	54	66	0	0	33	0.92
9916702--9916825	29	4.2	29	77	7	110	16	9	4	70	1.30
9917066--9917101	18	1.9	19	94	5	65	58	11	5	25	1.54
9918802--9918838	19	2.1	17	90	10	56	40	37	5	16	1.71
9920255--9920300	21	2.1	22	88	8	67	47	4	19	28	1.68
9920346--9920851	40	12.6	40	78	5	389	38	14	11	36	1.82
9920348--9920558	79	2.6	78	80	7	228	36	17	11	34	1.87
9920866--9921031	22	7.6	22	73	10	99	33	25	12	28	1.92
9920886--9921116	44	5.3	42	72	9	135	32	25	12	28	1.93
9920930--9921116	22	8.5	22	73	12	107	33	25	12	28	1.93
9923341--9923404	21	3.0	20	77	8	56	43	31	3	21	1.68
9923458--9923520	18	3.3	18	75	6	54	30	20	7	41	1.81
9924827--9924962	72	1.9	71	83	4	175	48	6	7	37	1.57
9925709--9925743	6	5.8	6	87	12	54	68	0	2	28	1.04
9925709--9925751	12	3.4	13	84	15	63	67	0	4	27	1.10
9925709--9925744	18	2.1	17	94	5	63	69	0	2	27	1.02
9925708--9925766	24	2.5	23	81	10	66	69	0	6	23	1.12
9926628--9926656	3	9.7	3	100	0	58	68	0	0	31	0.89
9926695--9926721	14	1.9	14	100	0	54	62	7	0	29	1.22
9927036--9927156	60	2.0	60	88	0	179	42	17	20	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9927335--9927384	17	2.9	17	81	0	64	40	14	12	34	1.82
9928160--9928403	120	2.0	119	81	7	280	41	12	23	22	1.88
9929142--9929179	20	1.9	20	88	0	58	5	13	0	81	0.85
9929552--9929589	7	5.4	7	87	12	60	10	15	0	73	1.09
9933974--9934050	25	3.2	24	80	10	68	70	3	6	19	1.26
9934523--9934566	22	2.0	22	86	8	63	43	27	6	22	1.78
9934925--9934972	20	2.4	20	82	6	62	56	12	4	27	1.54
9935399--9935638	73	3.3	72	89	3	342	46	4	10	38	1.60
9935399--9935681	73	3.9	73	86	5	337	46	4	9	38	1.58
9935401--9935864	72	6.5	71	79	6	224	46	5	10	37	1.62
9935401--9935864	143	3.2	143	78	6	391	46	5	10	37	1.62
9935937--9936079	73	2.0	72	81	1	169	42	4	10	41	1.60
9936116--9936203	37	2.4	37	82	3	106	47	4	4	43	1.44
9941601--9941638	19	2.0	19	100	0	76	42	5	31	21	1.75
9941927--9941975	20	2.4	20	86	3	71	46	0	0	53	1.00
9942813--9942853	19	2.1	19	90	4	64	73	7	2	17	1.17
9942817--9942859	19	2.2	18	84	12	50	74	6	4	13	1.19
9948855--9948908	25	2.2	25	89	0	81	18	3	9	68	1.32
9949004--9949078	21	3.6	21	75	8	73	36	17	10	36	1.84
9949019--9949115	42	2.3	42	80	7	108	37	15	9	38	1.80
9949187--9949330	46	3.4	44	70	21	126	34	8	12	44	1.72
9949211--9949284	36	2.0	37	87	7	107	29	9	14	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9949175--9949346	82	2.1	83	87	2	256	36	6	11	45	1.67
9953470--9953525	22	2.5	22	97	0	103	32	5	17	44	1.72
9953542--9953633	24	3.9	23	78	5	94	38	11	7	42	1.70
9953733--9953764	15	2.1	15	94	0	55	87	3	3	6	0.73
9955256--9955280	6	4.2	6	100	0	50	16	0	0	84	0.63
9955312--9955367	29	2.0	28	89	3	85	19	1	5	73	1.12
9955803--9955873	29	2.4	29	83	0	79	19	4	18	57	1.56
9956007--9956056	20	2.5	20	77	6	57	28	12	16	44	1.83
9956469--9956599	24	5.5	24	71	15	85	27	6	10	55	1.57
9956483--9956598	50	2.4	50	85	4	157	29	6	11	53	1.60
9956466--9956597	48	2.8	48	83	4	151	28	6	10	55	1.58
9956570--9956638	32	2.1	35	81	8	81	27	1	11	59	1.41
9967669--9967802	7	18.9	7	66	17	53	49	0	2	47	1.16
9968436--9968863	212	2.0	212	100	0	856	38	10	11	39	1.76
9968482--9968902	102	4.0	104	74	8	392	38	10	11	39	1.76
9969468--9969623	3	54.7	3	71	21	95	33	4	1	60	1.28
9981086--9981135	15	3.3	15	81	8	66	84	0	10	6	0.79
9981086--9981134	19	2.5	19	76	3	53	85	0	10	4	0.71
9981086--9981135	21	2.5	21	81	12	61	84	0	10	6	0.79
9982270--9982324	17	3.2	17	81	2	65	32	7	18	41	1.78
9982270--9982336	35	1.9	35	81	6	82	32	8	16	41	1.79
9982316--9982508	86	2.3	85	81	2	217	32	14	13	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9983137--9983220	37	2.3	37	79	8	98	21	22	11	44	1.85
9983352--9983425	34	2.2	34	85	4	96	20	18	8	52	1.70
9983235--9983537	149	2.0	149	92	1	500	22	23	10	43	1.83
9983867--9983955	5	17.2	5	75	16	67	38	2	3	56	1.29
9984904--9985022	51	2.3	51	84	8	145	67	3	4	25	1.24
9986724--9986754	1	31.0	1	93	0	53	0	3	0	96	0.21
9990479--9990511	6	5.8	6	86	13	52	0	30	0	69	0.88
9990479--9990511	17	1.9	17	93	0	57	0	30	0	69	0.88
9990479--9990511	11	3.0	11	95	0	57	0	30	0	69	0.88
9990527--9990564	17	2.2	17	90	0	58	28	28	2	39	1.70
9991441--9991477	19	2.0	19	89	5	58	51	2	13	32	1.55
9997449--9997603	51	3.0	51	81	5	186	45	7	19	28	1.76
9998085--9998158	32	2.4	31	79	2	85	31	12	25	31	1.92
9998165--9998237	25	2.9	24	80	8	83	41	8	30	20	1.81
9998535--9998638	52	2.0	52	86	3	147	43	8	19	28	1.80
10000192--10000220	3	9.7	3	100	0	58	0	65	0	34	0.93
10002921--10002956	2	18.0	2	100	0	72	0	50	0	50	1.00
10004561--10004593	2	16.5	2	100	0	66	48	0	0	51	1.00
10011048--10011106	29	2.0	29	83	6	75	44	8	1	45	1.44
10015272--10015651	189	2.0	188	90	2	593	34	16	10	38	1.83
10018369--10018408	12	3.3	12	82	0	53	37	20	12	30	1.89
10018345--10018408	24	2.7	23	82	4	65	39	20	9	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10019170--10020102	187	5.0	183	79	7	915	40	10	11	36	1.76
10019167--10020104	375	2.5	371	83	5	1156	40	10	11	36	1.76
10019976--10020218	124	2.0	124	79	4	265	39	11	11	36	1.79
10025021--10025478	179	2.6	179	85	5	668	33	12	7	46	1.69
10025021--10025473	60	7.7	58	88	5	655	33	12	7	47	1.68
10025021--10025472	119	3.9	117	89	5	693	33	12	7	46	1.68
10025509--10025579	11	7.2	11	73	23	52	78	0	4	16	0.90
10025494--10025579	16	5.7	15	72	24	65	76	0	5	17	0.97
10025509--10025592	31	2.9	27	78	16	89	77	0	4	17	0.94
10025631--10025669	5	7.6	5	83	16	53	2	35	41	20	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130