genome.fa.s556.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  125  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25255410--25255580	66	2.6	66	77	8	172	21	18	11	49	1.78
25255980--25256024	19	2.4	19	81	7	56	17	6	6	68	1.33
25256807--25257178	100	3.7	99	84	3	467	43	7	8	40	1.62
25258326--25258424	44	2.2	45	75	5	103	51	10	3	35	1.51
25266579--25267055	236	2.0	236	99	0	945	29	13	19	37	1.90
25271613--25271755	57	2.5	57	88	0	196	33	10	13	42	1.78
25275360--25275392	2	17.0	2	87	6	50	51	0	48	0	1.00
25276657--25276723	27	2.5	27	92	0	116	50	8	0	40	1.34
25276832--25276873	2	20.5	2	95	4	75	47	2	0	50	1.14
25277159--25277183	2	12.5	2	100	0	50	52	0	0	48	1.00
25277356--25277405	13	3.9	13	81	2	57	34	6	4	56	1.43
25292016--25292054	7	5.3	7	82	11	51	46	0	0	53	1.00
25292016--25292054	14	2.6	16	92	8	64	46	0	0	53	1.00
25294366--25294390	2	12.5	2	100	0	50	48	0	0	52	1.00
25298540--25298625	44	2.0	44	97	0	163	33	10	12	43	1.77
25303058--25303210	73	2.1	74	86	3	220	37	12	10	39	1.77
25303074--25303212	73	1.9	73	90	0	224	37	12	11	38	1.80
25303333--25303388	24	2.4	22	75	18	60	37	0	1	60	1.07
25311711--25311758	3	16.3	3	95	4	89	66	0	0	33	0.92
25311757--25311798	3	14.0	3	100	0	84	33	0	0	66	0.92
25316398--25316448	22	2.3	22	82	0	66	49	0	0	50	1.00
25316381--25316436	27	2.1	26	86	3	76	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25316412--25316454	20	2.2	20	87	8	61	48	0	0	51	1.00
25322546--25322580	17	1.9	19	88	11	56	37	0	2	60	1.12
25329826--25329868	2	21.5	2	100	0	86	51	0	0	48	1.00
25330327--25330359	3	11.0	3	100	0	66	66	0	0	33	0.92
25330540--25330570	3	10.0	3	93	6	53	64	0	0	35	0.94
25331553--25331625	38	1.9	38	86	5	103	30	15	8	46	1.74
25337262--25337291	2	15.5	2	93	6	53	50	0	0	50	1.00
25342306--25342363	19	3.1	19	100	0	116	31	10	25	32	1.89
25342921--25342953	13	2.4	14	85	10	50	84	9	6	0	0.76
25343541--25343592	19	2.7	20	82	11	63	44	1	0	53	1.11
25343552--25343602	24	2.2	23	82	10	59	43	3	0	52	1.19
25346135--25346180	10	4.7	10	81	5	58	60	0	2	36	1.09
25346137--25346180	20	2.2	20	92	4	72	63	0	2	34	1.07
25347293--25347330	2	19.0	2	88	0	58	52	44	0	2	1.14
25375588--25375625	20	1.9	20	88	0	58	42	21	23	13	1.88
25380278--25380316	13	2.9	15	78	21	50	56	0	0	43	0.99
25385551--25385577	4	6.8	4	100	0	54	25	0	22	51	1.48
25386942--25387008	35	1.9	35	93	0	116	28	7	22	41	1.80
25395555--25395617	28	2.2	28	81	13	76	68	0	3	28	1.05
25396727--25396790	27	2.6	24	75	24	62	43	9	1	45	1.45
25401087--25401113	2	13.5	2	100	0	54	51	0	0	48	1.00
25405071--25405168	46	2.0	49	85	14	134	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25405170--25405227	20	2.8	20	82	10	62	74	0	3	22	0.97
25409565--25409640	4	20.8	4	86	10	62	26	0	2	71	1.00
25409565--25409640	9	7.3	11	83	11	74	26	0	2	71	1.00
25409581--25409616	3	11.7	3	94	5	63	30	0	0	69	0.89
25410023--25410048	11	2.4	11	100	0	52	38	0	7	53	1.30
25410557--25410593	9	4.0	10	89	10	53	29	0	0	70	0.88
25410565--25410593	3	9.7	3	100	0	58	31	0	0	68	0.89
25410723--25411192	58	8.0	57	85	8	547	47	4	9	38	1.57
25410723--25411192	119	4.0	114	83	9	545	47	4	9	38	1.57
25410654--25411192	177	3.0	176	82	8	599	48	4	9	37	1.57
25411006--25411039	17	1.9	18	88	5	52	47	2	2	47	1.32
25415024--25415167	9	15.3	9	69	20	73	80	0	9	9	0.94
25415049--25415133	21	4.2	20	72	17	77	80	0	10	9	0.92
25415024--25415164	18	7.9	18	70	19	84	80	0	9	9	0.95
25415028--25415167	38	3.7	37	77	16	119	80	0	9	10	0.96
25416239--25416294	21	2.7	21	85	0	67	39	8	14	37	1.77
25416258--25416412	58	2.7	58	86	1	193	38	9	16	36	1.80
25416378--25416430	21	2.6	21	81	3	63	37	5	16	39	1.73
25416495--25416733	114	2.1	114	94	0	415	34	14	16	34	1.89
25416499--25416764	114	2.3	114	90	0	397	36	15	14	33	1.88
25416750--25416793	22	2.0	21	86	4	61	38	6	18	36	1.77
25416991--25417125	44	3.1	44	81	4	130	24	12	17	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25417019--25417125	45	2.4	44	84	1	142	24	12	18	44	1.84
25417444--25417487	17	2.4	19	88	7	65	20	6	0	72	1.07
25418373--25418431	6	8.3	7	78	17	52	28	1	1	67	1.10
25418385--25418419	3	11.7	3	100	0	70	31	0	0	68	0.90
25418480--25418611	66	2.0	67	89	5	205	55	3	6	35	1.40
25418473--25418839	59	6.1	60	79	13	384	49	4	7	38	1.51
25418548--25418839	117	2.5	117	85	8	375	48	4	8	38	1.54
25424180--25424227	25	1.9	25	87	8	71	64	8	0	27	1.22
25430531--25430576	20	2.2	22	88	7	69	60	0	0	39	0.97
25432202--25432240	13	2.9	13	81	7	51	2	17	2	76	1.01
25432198--25432244	23	2.0	23	84	8	60	4	19	2	74	1.09
25432334--25432400	20	3.7	20	67	29	58	43	4	2	49	1.38
25432335--25432410	34	2.2	34	93	4	127	44	3	2	48	1.35
25434952--25434997	23	2.0	23	95	0	83	34	10	13	41	1.79
25438673--25438759	44	2.0	44	93	4	149	39	12	8	40	1.73
25439451--25439708	86	3.0	86	88	0	390	39	10	14	35	1.80
25451180--25451212	13	2.5	13	100	0	66	15	24	24	36	1.93
25464253--25464297	15	2.9	16	81	18	51	55	0	0	44	0.99
25469373--25469443	23	3.0	23	76	15	81	43	8	21	26	1.81
25475204--25475270	18	3.6	18	71	11	53	50	2	1	44	1.26
25477985--25478056	32	2.3	31	85	4	99	44	2	1	51	1.24
25478015--25478082	12	5.6	12	69	22	52	45	1	1	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25478015--25478122	39	2.9	36	78	15	98	48	0	0	50	1.13
25477992--25478106	39	3.2	38	79	10	102	46	1	0	50	1.17
25478357--25478393	5	7.4	5	93	0	56	0	45	18	35	1.50
25479276--25479316	3	13.7	3	100	0	82	34	0	0	65	0.93
25480216--25480272	24	2.4	23	82	11	62	50	0	1	47	1.11
25483803--25483858	28	2.0	29	85	3	78	30	3	3	62	1.29
25485701--25485726	6	4.3	6	100	0	52	34	19	30	15	1.93
25486197--25486262	22	3.0	22	82	12	73	42	0	1	56	1.08
25486235--25486267	12	2.8	12	90	4	50	36	0	0	63	0.95
25486233--25486272	18	2.3	18	91	4	64	35	2	0	62	1.09
25487088--25487119	11	3.1	11	91	8	50	34	0	0	65	0.93
25500622--25500673	25	2.1	25	96	0	95	53	1	0	44	1.11
25501813--25501867	21	2.7	21	83	8	60	29	3	10	56	1.51
25501859--25501905	18	2.6	18	81	18	53	31	0	4	63	1.13
25511177--25511209	16	2.1	16	100	0	66	39	12	12	36	1.80
25519431--25519467	17	2.3	17	86	9	51	56	2	2	37	1.28
25519729--25519775	24	2.0	24	82	0	58	51	2	0	46	1.13
25520408--25520446	16	2.4	16	95	0	69	35	2	0	61	1.10
25520927--25521017	20	4.9	20	74	17	65	56	1	5	37	1.30
25520938--25521004	13	4.9	13	73	21	57	56	1	4	37	1.29
25520929--25521010	31	2.6	31	83	7	96	57	1	3	37	1.24
25520939--25521023	24	3.5	23	80	7	80	58	1	4	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25520939--25521017	18	4.3	18	78	12	72	56	1	5	36	1.29
25520938--25521010	11	6.2	11	79	9	65	57	1	4	36	1.26
25524235--25524278	20	2.1	20	87	8	61	47	0	2	50	1.13
25527323--25527361	16	2.4	16	95	0	69	35	2	0	61	1.10
25527417--25527508	41	2.3	40	78	10	91	45	1	1	52	1.15
25527839--25527930	20	4.9	20	73	17	65	56	1	5	36	1.30
25527841--25527905	32	2.0	32	90	0	103	56	1	3	38	1.24
25527861--25527984	24	5.3	22	71	15	72	58	2	3	35	1.27
25527847--25527947	40	2.5	41	78	13	102	58	1	4	34	1.31
25529359--25529417	17	3.7	16	75	13	59	45	0	1	52	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130