genome.fa.s556.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  28  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7175745--7175790	24	1.9	24	90	0	74	28	32	10	28	1.91
7182571--7182631	31	2.0	31	93	0	104	24	21	13	40	1.88
7214737--7214970	117	2.0	117	94	0	414	46	6	3	43	1.47
7218198--7218725	268	2.0	268	88	2	792	20	27	22	29	1.98
7218466--7219466	375	2.7	371	83	2	1170	20	28	21	28	1.98
7220232--7220304	37	2.0	37	86	5	103	23	47	9	19	1.78
7224111--7224161	21	2.4	20	81	12	57	35	1	5	56	1.35
7225669--7225746	32	2.4	32	80	4	77	42	19	15	23	1.89
7233622--7233693	32	2.2	32	82	4	92	34	20	18	26	1.95
7236925--7236981	28	2.0	28	93	0	96	31	10	15	42	1.81
7237140--7237180	20	2.0	20	85	0	55	75	4	0	19	0.98
7238161--7238220	6	10.2	6	83	3	77	61	3	1	33	1.22
7238188--7238221	17	2.0	17	94	0	59	55	2	0	41	1.15
7238161--7238220	24	2.5	24	89	2	86	61	3	1	33	1.22
7247625--7247663	12	3.2	12	85	0	51	28	0	0	71	0.86
7247625--7247663	18	2.2	18	90	0	60	28	0	0	71	0.86
7248368--7248396	12	2.3	13	94	5	51	89	3	6	0	0.57
7248366--7248398	16	2.0	17	88	5	50	87	3	9	0	0.63
7250118--7250165	6	8.0	6	88	0	69	64	4	2	29	1.23
7250118--7250165	24	2.0	24	95	0	87	64	4	2	29	1.23
7264110--7264144	14	2.5	14	90	0	52	17	11	0	71	1.14
7269464--7269490	11	2.5	11	100	0	54	29	29	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7271816--7271936	62	2.0	61	88	8	183	44	4	5	45	1.46
7273860--7273917	19	3.2	18	83	9	64	32	5	8	53	1.54
7273890--7273922	17	2.1	16	88	11	50	30	6	12	51	1.63
7279801--7279849	20	2.5	20	89	0	71	34	16	16	32	1.91
7280060--7280108	24	2.0	24	88	0	71	30	8	12	48	1.69
7280094--7280183	46	2.0	46	84	0	117	42	6	8	42	1.62
7280094--7280177	23	3.7	23	71	6	62	41	7	9	41	1.65
7280507--7280710	34	5.9	34	76	6	169	36	13	12	37	1.83
7280507--7280673	17	9.8	17	78	4	104	37	13	11	36	1.82
7280893--7280926	17	1.9	18	88	5	52	35	8	5	50	1.58
7280966--7281007	18	2.4	18	80	4	50	26	4	19	50	1.67
7281439--7281478	19	2.2	19	86	4	55	80	5	12	2	0.98
7281719--7281748	13	2.3	13	94	0	51	10	0	10	80	0.92
7282470--7282577	38	2.8	37	77	21	121	32	4	10	52	1.55
7282500--7282577	21	3.9	21	81	13	83	33	5	11	50	1.61
7282533--7282576	17	2.6	17	83	16	65	34	4	9	52	1.54
7286974--7287022	3	16.3	3	95	0	89	65	0	0	34	0.93
7288370--7288476	53	2.0	53	90	3	171	67	4	13	14	1.38
7289260--7289295	16	2.2	16	90	9	56	47	5	0	47	1.25
7290189--7290245	20	2.9	21	85	12	77	59	0	1	38	1.08
7290326--7290357	17	1.9	17	93	6	57	56	0	6	37	1.25
7290193--7290421	77	2.9	76	76	11	223	53	2	7	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7290547--7290741	78	2.5	76	81	7	225	52	5	7	35	1.51
7294449--7294843	40	9.7	40	71	6	240	38	13	11	36	1.81
7294480--7294841	41	8.9	42	73	9	230	38	13	10	37	1.80
7294448--7294843	123	3.2	121	77	8	415	38	13	11	36	1.81
7294918--7295029	22	5.1	22	73	12	86	36	22	10	30	1.88
7297503--7297556	25	2.2	25	86	6	74	46	38	0	14	1.45
7297508--7297564	25	2.2	25	81	9	71	45	40	0	14	1.44
7300085--7300111	7	3.9	7	100	0	54	55	0	0	44	0.99
7304377--7304436	19	3.2	19	75	17	63	21	5	1	71	1.14
7304383--7304452	18	3.8	19	78	14	67	22	2	2	71	1.13
7304493--7304560	26	2.7	26	76	13	79	57	0	7	35	1.27
7316465--7317304	357	2.3	357	83	3	1062	37	12	13	36	1.82
7330106--7330143	4	9.5	4	100	0	76	23	0	0	76	0.79
7330139--7330186	3	16.0	3	100	0	96	33	0	0	66	0.92
7347893--7348066	81	2.1	81	98	0	339	57	16	4	21	1.57
7348183--7348208	8	3.2	8	100	0	52	53	23	11	11	1.69
7349176--7349223	20	2.4	20	100	0	96	20	29	6	43	1.76
7349481--7349534	3	18.0	3	100	0	108	33	0	0	66	0.92
7352377--7352422	21	2.2	21	84	7	58	58	2	6	32	1.36
7353905--7353932	6	4.7	6	100	0	56	53	46	0	0	1.00
7366342--7366403	26	2.3	27	81	13	65	38	0	3	58	1.15
7368302--7368402	30	3.3	29	78	12	80	26	2	24	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7368355--7368428	30	2.6	28	84	4	85	24	1	22	51	1.56
7368832--7368903	36	2.0	36	82	15	87	70	4	2	22	1.17
7369953--7369988	14	2.7	13	87	8	54	19	5	0	75	1.00
7376256--7376285	2	15.0	2	92	0	51	46	50	3	0	1.18
7382186--7382214	2	15.0	2	92	7	51	51	0	48	0	1.00
7388119--7388187	35	2.0	35	97	0	129	39	17	11	31	1.85
7397509--7397534	10	2.6	10	100	0	52	7	0	7	84	0.77
7402342--7402391	2	25.0	2	100	0	100	0	50	0	50	1.00
7402422--7402446	2	12.5	2	100	0	50	52	0	0	48	1.00
7406269--7406619	63	5.6	62	78	8	280	37	11	11	39	1.76
7430158--7430191	15	2.3	15	90	10	52	52	8	0	38	1.33
7431191--7431249	28	2.3	24	82	11	64	57	6	1	33	1.35
7432467--7432533	11	5.9	12	71	15	54	58	0	1	40	1.07
7434362--7434394	13	2.5	13	81	18	50	42	3	6	48	1.43
7436925--7437069	75	1.9	76	85	1	202	19	5	19	55	1.62
7441062--7441159	42	2.3	42	84	6	128	19	30	6	43	1.75
7441064--7441174	42	2.6	42	80	2	116	21	29	5	43	1.75
7441701--7441777	32	2.4	32	86	2	102	25	9	7	57	1.57
7441719--7441778	18	3.6	18	67	17	56	26	8	8	56	1.57
7442209--7442352	42	3.4	43	81	8	181	52	15	9	21	1.71
7442335--7442432	42	2.3	42	82	0	115	57	18	5	19	1.59
7444814--7444847	16	2.1	17	88	5	52	35	5	11	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7445373--7445506	18	7.2	18	69	15	76	57	2	0	39	1.16
7445384--7445532	23	6.8	23	71	18	111	56	2	1	39	1.22
7445373--7445513	41	3.4	41	80	12	162	56	2	0	40	1.16
7445373--7445466	23	4.3	23	74	14	92	57	2	0	40	1.11
7445405--7445516	15	7.8	16	73	22	65	56	1	0	41	1.16
7445596--7445644	17	2.8	17	78	9	55	44	0	0	55	0.99
7445582--7445651	37	1.9	36	85	8	97	45	0	0	54	0.99
7445627--7445692	26	2.6	25	83	7	96	46	1	0	51	1.10
7445899--7445924	3	8.7	3	100	0	52	65	0	0	34	0.93
7446534--7446591	27	2.2	26	84	3	71	51	0	10	37	1.36
7449060--7449236	91	1.9	92	97	1	338	25	14	8	50	1.71
7467601--7467648	18	2.7	18	83	0	60	37	4	27	31	1.76
7471212--7471257	23	2.0	22	88	12	67	67	8	0	23	1.18
7477366--7477394	14	2.0	15	93	6	51	24	6	27	41	1.80
7478556--7478620	26	2.6	25	80	4	85	49	0	3	47	1.17
7478570--7478618	15	3.5	15	71	21	52	44	0	4	51	1.20
7478615--7478670	20	2.7	21	76	15	62	55	0	1	42	1.10
7478697--7478874	15	12.1	15	70	22	121	41	0	2	56	1.12
7478688--7478841	25	6.1	26	65	22	85	40	0	2	57	1.13
7478712--7478874	44	3.6	43	74	16	136	41	0	2	55	1.13
7478738--7478849	31	3.7	30	73	17	108	41	0	3	55	1.17
7478706--7478874	75	2.2	79	80	10	188	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7478997--7479048	22	2.4	22	83	3	61	36	5	0	57	1.23
7485282--7485306	2	12.5	2	100	0	50	48	0	0	52	1.00
7488092--7488309	58	3.8	58	88	5	300	37	11	7	44	1.69
7488092--7488310	117	1.9	116	87	4	325	36	11	7	44	1.68
7488373--7488415	20	2.2	20	83	8	52	76	0	2	20	0.89
7488788--7488862	33	2.4	30	84	13	89	62	4	5	28	1.35
7488897--7488978	7	11.9	7	81	12	82	76	2	0	20	0.89
7488906--7488978	5	15.0	5	75	13	64	78	1	0	20	0.83
7489175--7489373	43	4.7	42	72	14	149	39	18	16	26	1.91
7490347--7490401	23	2.4	23	76	8	58	16	7	0	76	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130