genome.fa.s556.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  21  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5569199--5569298	45	2.2	45	82	3	130	32	17	20	31	1.95
5569224--5569318	23	4.2	23	70	15	63	31	16	18	32	1.94
5569359--5569422	23	2.8	23	88	4	94	31	18	15	34	1.93
5569281--5569467	100	1.9	100	85	2	259	34	22	14	28	1.93
5569597--5569710	56	2.1	56	81	6	144	33	18	17	30	1.94
5569971--5570060	44	2.1	44	81	6	103	32	7	10	50	1.65
5570315--5570365	8	5.9	8	78	17	57	80	3	1	13	0.94
5570315--5570366	20	2.8	20	80	13	67	80	3	1	13	0.93
5570624--5570666	22	2.0	22	90	0	68	25	4	23	46	1.71
5573928--5573978	18	2.9	18	80	13	61	56	0	3	39	1.18
5574066--5574158	29	3.3	29	78	3	91	52	9	10	26	1.67
5574715--5574825	56	2.0	57	86	8	160	40	7	1	50	1.40
5592783--5592862	42	2.0	40	85	5	106	37	10	15	37	1.80
5592856--5592898	18	2.4	18	88	0	59	48	9	11	30	1.71
5593006--5593115	33	3.3	33	77	7	100	44	10	17	27	1.82
5593028--5593102	16	4.6	16	75	11	62	42	12	17	28	1.84
5593130--5593188	17	3.4	17	79	4	64	38	8	10	42	1.69
5593113--5593209	34	2.8	35	79	3	99	35	9	12	43	1.74
5601494--5601555	27	2.3	27	83	2	72	72	4	1	20	1.12
5621777--5621966	26	6.9	26	70	21	97	56	1	1	40	1.15
5621771--5621966	83	2.3	82	80	13	204	56	1	1	40	1.15
5621760--5621935	18	11.0	16	73	20	97	55	2	0	42	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5621980--5622027	19	2.7	18	83	6	62	43	2	0	54	1.12
5621981--5622025	17	2.6	18	83	13	58	46	2	0	51	1.13
5623073--5623132	30	2.0	30	90	3	95	30	18	8	43	1.79
5623155--5623232	31	2.6	30	87	6	113	33	5	24	37	1.78
5623155--5623245	30	3.0	30	85	1	119	36	5	24	34	1.79
5623157--5623261	30	3.5	30	85	3	86	36	5	22	35	1.78
5631602--5631641	17	2.4	17	80	19	57	30	7	7	55	1.56
5631654--5631699	20	2.2	21	88	3	67	28	4	13	54	1.57
5631624--5631785	24	7.1	23	74	10	120	32	4	10	53	1.55
5631648--5631747	47	2.2	45	83	7	121	32	4	10	54	1.52
5631624--5631791	21	7.5	21	66	20	74	32	4	10	53	1.53
5631768--5631923	32	5.5	32	67	24	107	27	5	10	55	1.57
5631773--5631946	54	3.2	53	84	8	210	28	6	11	54	1.61
5631829--5631904	20	4.1	20	69	19	74	30	5	7	56	1.50
5631853--5631898	22	2.1	22	91	0	74	30	4	6	58	1.43
5631903--5631944	21	2.0	21	90	4	68	26	9	11	52	1.68
5631740--5632064	56	6.0	53	72	15	235	29	4	9	55	1.53
5632009--5632062	19	2.8	20	80	11	67	31	3	7	57	1.44
5632271--5632343	38	2.0	36	86	5	101	31	8	16	43	1.77
5634099--5634125	14	1.9	14	100	0	54	70	0	14	14	1.17
5651106--5651137	3	10.7	3	100	0	64	68	0	0	31	0.90
5653783--5653827	20	2.2	20	84	8	54	60	2	4	33	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5654905--5654945	2	20.5	2	100	0	82	48	0	0	51	1.00
5655303--5655343	20	2.1	19	86	4	55	75	2	0	21	0.92
5656317--5656373	28	2.0	29	86	6	82	54	1	1	42	1.21
5656681--5656732	15	3.3	16	78	10	54	48	13	3	34	1.61
5657667--5657699	17	1.9	17	93	0	57	54	0	0	45	0.99
5658483--5658555	14	5.1	14	70	18	51	24	1	21	52	1.55
5659119--5659143	13	1.9	13	100	0	50	28	0	0	72	0.86
5659166--5659203	20	1.9	20	88	0	58	39	2	2	55	1.28
5660439--5660595	52	3.0	52	87	5	194	26	22	8	42	1.83
5660620--5660650	11	2.8	11	100	0	62	51	29	0	19	1.47
5660907--5661017	24	4.5	24	72	2	78	22	33	6	37	1.79
5661511--5661667	52	3.0	52	78	9	176	28	21	7	43	1.78
5664088--5664162	35	2.1	35	82	4	89	49	8	17	25	1.73
5664708--5664751	23	1.9	23	86	9	63	40	6	4	47	1.50
5665152--5665275	48	2.5	50	74	10	137	48	19	7	25	1.74
5665417--5665563	56	2.6	55	76	4	132	31	16	21	31	1.95
5665543--5665620	27	2.8	27	84	3	93	30	14	24	30	1.94
5665572--5665634	29	2.2	29	82	5	83	31	14	23	30	1.94
5665440--5665688	28	8.9	28	75	10	134	32	15	21	31	1.94
5666658--5666688	12	2.7	12	95	5	55	12	0	0	87	0.55
5667887--5667918	16	1.9	17	93	6	57	12	6	3	78	1.06
5670337--5670437	38	2.7	39	81	3	109	42	11	17	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5670731--5670765	3	11.7	3	100	0	70	31	0	0	68	0.90
5672913--5673004	22	4.1	22	81	13	82	17	1	28	53	1.51
5672919--5673005	15	5.9	15	73	11	72	17	1	28	52	1.51
5672941--5673004	8	8.5	8	70	19	57	15	0	29	54	1.41
5673581--5673618	20	1.9	20	94	0	67	39	0	2	57	1.12
5673604--5673630	3	9.0	3	100	0	54	33	0	0	66	0.92
5676657--5676692	2	18.0	2	100	0	72	50	0	0	50	1.00
5677076--5677114	12	3.2	12	85	7	53	56	0	0	43	0.99
5677347--5677390	22	2.0	23	86	8	65	45	2	4	47	1.35
5681644--5681693	24	2.2	23	86	10	68	20	6	8	66	1.40
5691987--5692011	13	1.9	13	100	0	50	0	12	0	88	0.53
5692090--5692119	3	10.0	3	100	0	60	66	0	0	33	0.92
5692123--5692244	58	2.1	58	98	0	235	42	6	4	46	1.48
5693046--5693084	19	2.1	18	85	4	51	51	5	0	43	1.24
5693902--5693953	21	2.5	21	90	6	79	50	0	0	50	1.00
5693902--5693953	22	2.5	22	93	6	90	50	0	0	50	1.00
5696849--5696897	16	3.0	17	82	14	59	38	0	0	61	0.96
5698646--5698684	20	1.9	21	89	5	62	53	0	0	46	1.00
5698801--5698830	16	1.9	16	93	6	53	40	0	0	60	0.97
5699615--5699644	2	15.0	2	92	0	51	46	0	0	53	1.00
5708809--5709176	183	2.0	182	91	1	603	39	17	14	28	1.89
5709740--5709764	13	1.9	13	100	0	50	24	12	24	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5714890--5714921	6	5.3	6	100	0	64	50	0	0	50	1.00
5715152--5715183	6	5.3	6	100	0	64	18	31	0	50	1.48
5718442--5718535	21	4.5	21	72	5	73	38	3	7	51	1.46
5718417--5718468	27	1.9	27	88	0	77	30	3	7	57	1.45
5718873--5718928	22	2.5	22	82	0	58	41	5	7	46	1.54
5718924--5719001	22	3.5	22	78	3	77	41	15	7	35	1.76
5718990--5719047	22	2.6	22	83	0	80	37	10	8	43	1.70
5722682--5722719	2	18.5	2	89	5	58	50	0	2	47	1.15
5750606--5750634	2	14.5	2	100	0	58	48	0	0	51	1.00
5752666--5752717	27	1.9	27	92	7	88	21	23	26	28	1.99
5754413--5754471	24	2.5	24	72	10	57	54	16	0	28	1.43
5756011--5756035	11	2.3	11	100	0	50	44	8	8	40	1.63
5758652--5758681	15	2.1	14	93	6	51	46	0	0	53	1.00
5762758--5762791	14	2.3	15	90	5	52	41	0	0	58	0.98
5763826--5763861	18	2.0	18	88	0	54	8	0	88	2	0.59
5770081--5770123	14	2.9	15	80	13	52	2	4	6	86	0.79
5790664--5790725	17	3.6	18	76	8	65	58	0	1	40	1.08
5790666--5790740	34	2.2	34	90	4	116	60	0	2	37	1.11
5790808--5790850	19	2.3	18	88	7	68	60	4	0	34	1.17
5791919--5792014	10	9.8	10	72	4	70	36	3	3	57	1.30
5791943--5792031	20	4.7	18	71	16	63	35	2	3	58	1.27
5791911--5792034	58	2.2	55	84	7	167	38	2	2	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5792779--5793032	130	2.0	130	98	0	490	25	14	18	42	1.87
5793034--5793078	2	23.0	2	86	4	65	55	0	0	44	0.99
5798106--5798136	2	15.5	2	100	0	62	51	0	0	48	1.00
5801098--5801180	29	2.9	28	80	8	103	34	8	7	49	1.61
5801098--5801209	30	3.8	30	80	6	113	33	9	8	49	1.65
5802933--5802974	17	2.4	18	80	11	52	57	0	0	42	0.99
5803208--5803263	10	5.4	10	78	16	51	83	8	1	5	0.85
5803195--5803263	22	3.1	22	76	16	63	82	7	1	8	0.90
5804053--5804086	10	3.5	10	88	4	52	91	0	5	2	0.51
5804053--5804086	11	3.4	10	88	11	52	91	0	5	2	0.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130