genome.fa.s556.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  42  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10026062--10026114	24	2.2	26	86	10	76	41	18	1	37	1.62
10026362--10026386	10	2.5	10	100	0	50	80	0	0	20	0.72
10026482--10026609	3	42.3	3	69	25	58	66	3	0	29	1.10
10026460--10026628	70	2.4	71	77	10	184	71	4	0	24	1.04
10026478--10026600	14	9.5	13	69	20	71	67	3	0	29	1.06
10026481--10026597	10	11.3	10	67	23	57	66	3	0	29	1.08
10026563--10026615	9	6.1	9	85	12	51	67	5	0	26	1.12
10026784--10026814	8	4.0	8	95	4	55	0	0	9	90	0.46
10026820--10027259	41	11.0	41	96	3	794	37	23	17	22	1.94
10028260--10028348	15	5.3	18	87	6	61	15	11	0	73	1.11
10028290--10028348	7	8.0	7	81	10	73	13	8	0	77	0.97
10028288--10028348	15	4.1	15	95	0	104	13	9	0	77	1.00
10028272--10028348	8	9.6	8	83	13	97	14	10	0	75	1.05
10035544--10035575	15	2.1	16	94	5	57	50	6	25	18	1.70
10038753--10039215	59	7.7	58	80	14	523	34	11	7	46	1.68
10038755--10039234	179	2.7	178	81	8	573	34	11	7	47	1.67
10039242--10039326	6	13.7	6	68	19	50	76	1	7	15	1.06
10039242--10039290	16	3.1	15	80	11	53	77	0	6	16	0.96
10039261--10039306	20	2.2	21	84	3	58	76	2	6	15	1.09
10039869--10039922	25	2.2	25	83	6	65	37	18	5	38	1.74
10040268--10040323	25	2.1	27	80	6	62	73	3	7	16	1.20
10040327--10040434	8	14.4	8	74	12	70	62	2	1	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10040323--10040376	23	2.5	21	77	16	56	61	3	0	35	1.14
10040349--10040443	46	2.1	44	81	14	106	64	3	2	30	1.21
10045964--10045990	3	9.0	3	100	0	54	66	0	0	33	0.92
10047076--10047108	13	2.5	13	85	14	50	54	0	0	45	0.99
10048966--10049010	20	2.2	20	88	0	63	22	4	15	57	1.56
10050002--10050026	13	1.9	13	100	0	50	36	0	0	64	0.94
10053036--10053281	120	2.0	121	93	2	424	44	6	4	44	1.51
10055212--10055274	28	2.2	29	85	2	83	12	14	1	71	1.22
10058604--10058889	154	1.9	154	89	2	450	42	10	12	34	1.77
10058618--10058948	153	2.1	154	81	6	375	42	10	12	33	1.78
10059718--10059927	90	2.3	90	82	4	242	39	15	13	30	1.87
10059794--10059870	37	2.1	37	87	4	111	32	18	15	33	1.92
10059831--10059975	48	2.9	49	75	5	130	35	17	14	32	1.90
10059794--10060221	123	3.3	132	82	8	460	35	17	14	32	1.91
10059932--10060013	37	2.2	37	95	0	146	36	20	14	28	1.92
10059932--10060093	89	1.8	86	82	3	207	34	18	15	31	1.92
10060060--10060130	37	1.9	37	91	5	117	32	19	21	26	1.97
10060145--10060221	37	2.1	37	87	0	109	35	19	12	32	1.90
10061204--10061280	29	2.7	26	79	15	82	9	5	3	81	0.96
10061204--10061278	16	4.9	15	77	8	62	9	5	2	82	0.91
10061205--10061275	24	2.8	23	79	14	70	9	5	2	81	0.95
10061214--10061278	8	8.0	8	78	10	60	9	4	3	83	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10061204--10061280	30	2.7	29	80	13	88	9	5	3	81	0.96
10066131--10066175	19	2.4	19	92	0	72	11	13	17	57	1.64
10067449--10067492	16	2.8	16	83	13	63	70	2	4	22	1.17
10067480--10067518	15	2.4	16	83	12	53	71	2	5	20	1.17
10068339--10068388	26	2.0	26	84	4	66	24	18	16	42	1.89
10079250--10079326	37	2.1	38	82	7	95	63	9	11	15	1.51
10080263--10080302	16	2.4	17	87	8	64	75	0	5	20	0.99
10080272--10080319	21	2.2	22	85	7	71	81	0	6	12	0.87
10080272--10080313	21	2.0	21	95	4	77	80	0	4	14	0.86
10081209--10081425	3	72.3	3	88	5	125	52	0	13	32	1.44
10081397--10081423	14	1.9	14	100	0	54	66	3	0	29	1.09
10081211--10081461	6	41.8	6	82	7	116	53	1	13	31	1.48
10082462--10082500	17	2.2	19	86	9	55	53	10	2	33	1.48
10083958--10084019	32	1.9	32	83	0	79	38	27	4	29	1.77
10090298--10090347	10	4.6	11	80	14	52	0	2	18	80	0.82
10090310--10090348	19	2.1	19	85	9	53	0	0	20	79	0.73
10094154--10094185	15	2.1	15	100	0	64	46	28	0	25	1.53
10095915--10095989	37	2.0	37	84	5	98	48	2	5	44	1.39
10096139--10096299	72	2.2	72	80	2	180	42	9	4	44	1.56
10098095--10098127	12	2.6	13	85	9	50	75	0	6	18	1.00
10103222--10103292	29	2.4	29	81	9	90	46	4	0	49	1.21
10103414--10103454	3	13.7	3	100	0	82	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10123107--10123132	13	2.0	13	100	0	52	15	7	0	76	0.99
10125347--10125411	22	2.8	22	74	19	60	29	3	0	67	1.05
10127787--10127846	20	3.0	19	77	18	59	56	1	1	40	1.19
10127799--10127846	10	4.8	10	81	0	60	58	0	2	39	1.10
10127786--10127852	30	2.3	30	82	14	79	59	1	1	37	1.16
10127799--10127895	10	10.0	10	70	17	55	58	1	3	37	1.20
10127799--10127852	10	5.7	9	79	16	56	61	0	1	37	1.07
10127807--10127865	20	3.0	20	77	20	63	59	1	1	37	1.18
10127807--10127898	40	2.4	37	77	13	96	58	1	3	36	1.21
10128115--10128162	17	2.8	16	78	12	51	66	6	2	25	1.26
10128160--10128202	19	2.2	20	84	8	54	72	9	2	16	1.21
10128945--10128974	15	2.1	14	93	6	51	63	3	26	6	1.35
10129388--10129440	25	2.1	25	86	6	72	30	5	7	56	1.50
10131569--10131867	149	2.0	150	98	0	573	39	19	8	32	1.82
10137848--10138809	160	6.0	161	81	6	968	40	16	10	32	1.82
10142458--10142951	161	3.1	161	80	5	552	42	14	8	33	1.78
10147146--10147235	3	31.3	3	80	8	107	61	1	3	34	1.20
10148149--10148191	21	2.0	21	90	0	68	37	23	9	30	1.86
10154608--10154639	6	5.3	6	92	0	55	34	31	31	3	1.73
10155471--10155497	3	9.0	3	100	0	54	0	33	0	66	0.92
10161083--10161124	12	3.4	12	86	3	57	50	2	0	47	1.14
10161179--10161216	13	2.8	14	84	8	51	23	0	2	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10161185--10161231	14	3.3	14	74	14	51	25	0	2	72	0.96
10162874--10163284	202	2.0	202	96	1	754	44	11	8	36	1.71
10163441--10163495	28	2.0	28	86	13	78	23	21	20	34	1.97
10166497--10166535	14	2.9	14	88	3	53	20	0	7	71	1.10
10176882--10177026	3	50.0	3	75	9	104	33	5	4	56	1.43
10176981--10177023	5	8.2	5	89	5	50	37	0	4	58	1.19
10177871--10177954	5	17.2	5	72	18	52	14	7	2	76	1.10
10177881--10177947	23	2.8	25	80	11	70	14	7	2	74	1.16
10181988--10182177	94	2.0	94	91	0	308	32	13	21	32	1.92
10188091--10188156	3	22.0	3	96	0	123	33	1	0	65	1.02
10188152--10188183	12	2.7	12	95	0	55	34	25	0	40	1.56
10188201--10188272	15	4.8	15	84	0	72	41	1	6	50	1.38
10188214--10188274	5	12.2	5	89	0	77	42	1	3	52	1.27
10189130--10189195	6	11.7	6	75	15	61	16	4	0	78	0.90
10189130--10189197	17	4.1	17	80	17	88	17	4	0	77	0.92
10189128--10189194	34	2.0	35	91	5	111	16	4	0	79	0.90
10189131--10189195	11	5.8	11	78	8	69	16	4	0	78	0.91
10190098--10190213	43	2.7	43	87	2	162	20	18	17	43	1.88
10191427--10191473	18	2.5	19	82	3	51	10	6	2	80	0.96
10191442--10191501	15	4.1	14	74	21	52	11	3	5	80	1.00
10195534--10195571	20	2.0	20	89	5	60	13	0	10	76	1.02
10198732--10198801	30	2.4	30	92	2	115	21	24	12	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10198816--10198847	15	2.1	15	100	0	64	12	12	28	46	1.78
10199460--10199538	39	2.0	39	90	0	122	43	15	18	22	1.88
10199825--10199851	1	27.0	1	100	0	54	100	0	0	0	0.00
10202502--10202526	10	2.5	10	100	0	50	0	8	0	92	0.40
10207709--10207920	101	2.1	101	96	0	390	32	15	17	33	1.92
10210535--10210594	30	2.0	30	93	0	102	46	10	11	31	1.73
10218832--10218865	11	2.9	12	86	8	52	47	0	2	50	1.16
10219154--10219194	22	1.9	22	90	5	66	80	0	17	2	0.82
10219953--10219986	2	17.0	2	93	0	50	44	0	5	50	1.26
10223923--10224065	27	5.6	25	74	15	89	39	3	6	51	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130