genome.fa.s556.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168381.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_6, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26551601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   

This is table  76  of  130  ( 15485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15508613--15508691	36	2.2	36	95	0	140	34	12	11	41	1.79
15508609--15508697	36	2.3	40	81	16	116	34	11	10	43	1.74
15518340--15518366	11	2.5	11	100	0	54	66	0	0	33	0.92
15518442--15518475	18	1.9	18	88	5	52	47	0	11	41	1.40
15521108--15521204	35	2.8	35	88	0	140	21	17	37	23	1.94
15521453--15521485	15	2.1	16	88	5	50	42	15	12	30	1.83
15521694--15521730	17	2.2	17	90	0	56	75	0	10	13	1.04
15523015--15523057	15	2.9	15	78	0	50	44	0	4	51	1.22
15523091--15523135	7	6.0	7	82	14	54	22	0	0	77	0.76
15523094--15523165	13	5.5	13	76	12	76	26	1	0	72	0.93
15523094--15523168	28	3.0	24	83	14	105	28	1	0	70	0.95
15523115--15523164	7	7.3	7	78	13	59	30	2	0	68	1.01
15523111--15523171	28	2.2	28	96	0	113	32	1	0	65	1.02
15525601--15525625	2	12.5	2	100	0	50	48	0	0	52	1.00
15527364--15527421	21	2.8	21	76	10	55	32	6	0	60	1.23
15527484--15527529	24	1.9	24	86	8	67	80	0	10	8	0.91
15528704--15528753	24	2.0	25	88	3	75	42	2	0	56	1.11
15528707--15528750	20	2.3	19	88	7	63	43	2	0	54	1.12
15528710--15528764	24	2.3	24	80	0	65	43	3	1	50	1.30
15529082--15529138	23	2.5	22	81	10	71	14	1	10	73	1.17
15529127--15529165	17	2.3	17	81	0	51	20	2	5	71	1.17
15529721--15529929	49	4.3	49	82	5	228	42	15	12	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15530503--15530547	23	2.0	23	81	0	54	42	13	11	33	1.79
15530572--15530625	21	2.5	21	84	6	63	44	16	9	29	1.79
15530511--15530626	59	2.0	60	84	5	155	42	15	11	31	1.82
15530609--15530751	38	3.8	38	81	3	171	41	12	13	31	1.82
15530609--15530754	76	1.9	76	88	0	220	42	13	13	30	1.82
15530755--15530848	21	4.5	21	72	2	64	36	12	14	36	1.85
15530890--15530928	20	2.0	20	94	0	69	43	10	12	33	1.77
15538602--15538646	24	1.9	23	86	4	63	46	2	2	48	1.26
15543140--15543183	19	2.3	19	88	0	61	20	9	15	54	1.68
15543135--15543181	19	2.5	19	85	0	58	21	12	10	55	1.67
15543752--15543905	56	2.8	55	74	15	156	34	9	18	37	1.83
15543867--15544073	56	3.7	56	79	3	213	36	13	17	32	1.89
15543982--15544176	56	3.6	54	73	10	146	34	13	19	32	1.90
15554302--15554346	20	2.1	21	84	8	56	15	15	6	62	1.52
15564316--15564372	22	2.6	22	80	5	62	68	0	0	31	0.90
15564322--15564361	19	2.0	21	90	9	66	72	0	0	27	0.85
15565302--15565352	16	3.1	16	83	5	66	13	0	9	76	1.02
15565307--15565347	18	2.3	18	91	4	66	14	0	7	78	0.96
15565294--15565344	24	2.1	24	82	7	59	15	0	7	76	1.00
15565601--15566130	47	10.8	49	80	8	532	40	22	10	26	1.87
15565651--15566130	144	3.3	143	83	7	535	40	22	11	26	1.87
15565602--15566128	191	2.7	193	81	8	611	40	22	10	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15566444--15566478	10	3.4	10	92	4	52	11	22	2	62	1.41
15575695--15576339	324	2.0	323	95	1	1177	33	20	15	31	1.93
15579516--15579540	12	2.1	12	100	0	50	0	8	0	92	0.40
15579772--15579812	21	2.0	21	85	0	55	7	12	4	75	1.16
15585397--15585430	2	17.0	2	87	0	50	50	0	5	44	1.26
15587016--15587080	12	5.2	12	75	15	60	73	3	1	21	1.05
15587762--15587838	24	3.0	25	74	20	70	53	25	6	14	1.65
15588077--15588119	19	2.3	19	91	0	68	13	9	2	74	1.16
15588509--15588598	35	2.6	35	80	1	101	36	14	14	34	1.87
15588607--15588953	17	20.2	17	71	8	121	41	11	10	36	1.76
15588648--15588853	102	2.0	101	81	9	240	40	10	12	37	1.76
15588847--15588953	52	2.1	52	81	10	121	42	13	8	35	1.74
15589692--15589743	17	3.1	17	71	0	50	34	23	13	28	1.92
15589716--15589977	34	7.8	34	71	6	120	41	13	12	32	1.82
15589788--15590018	17	13.5	17	73	6	92	41	11	10	36	1.75
15589800--15589910	34	3.2	34	83	2	132	44	10	9	35	1.73
15590028--15590104	18	4.4	17	79	9	66	40	5	9	45	1.58
15590048--15590104	17	3.3	17	82	9	71	36	7	10	45	1.66
15590007--15590104	34	2.8	34	76	10	92	40	6	8	44	1.59
15590048--15590111	17	3.7	17	78	12	58	39	7	10	42	1.69
15590108--15590143	17	2.1	17	89	0	54	50	16	5	27	1.68
15590764--15590805	18	2.3	18	84	8	50	73	9	0	16	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15590965--15591056	17	5.4	18	76	12	79	43	13	9	33	1.76
15590962--15591107	50	2.9	49	71	10	132	41	12	11	34	1.79
15591279--15591363	44	1.9	44	83	4	109	43	12	10	32	1.77
15591415--15591537	46	2.7	45	78	5	120	43	9	8	38	1.69
15591452--15591513	24	2.7	22	80	9	79	46	9	8	35	1.66
15597995--15598038	18	2.3	20	84	11	65	9	11	6	72	1.27
15598354--15598393	16	2.4	16	87	4	53	25	2	0	72	0.97
15598409--15598451	16	2.6	17	82	10	54	65	2	0	32	1.06
15599704--15599917	107	2.0	107	96	0	392	24	21	21	33	1.97
15602011--15602079	16	4.4	16	77	17	74	53	2	0	43	1.15
15609111--15609139	5	5.8	5	100	0	58	41	17	20	20	1.90
15611742--15611799	25	2.3	25	96	0	107	46	5	13	34	1.66
15612305--15612353	18	2.7	18	83	0	62	46	6	6	40	1.53
15612661--15612696	18	2.0	18	94	0	63	66	8	11	13	1.44
15625880--15625927	24	2.0	24	88	8	71	45	4	0	50	1.21
15626006--15626068	31	2.0	32	84	9	85	44	7	3	44	1.49
15633858--15633886	14	2.0	15	93	6	51	89	0	10	0	0.48
15637210--15637239	1	30.0	1	100	0	60	100	0	0	0	0.00
15638896--15638976	32	2.6	31	77	11	85	35	0	3	60	1.15
15638899--15638976	31	2.5	30	80	10	86	34	0	3	61	1.14
15638943--15639060	59	2.0	60	80	5	132	38	6	4	50	1.48
15639099--15639163	29	2.2	29	78	10	71	52	6	3	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15652674--15652717	20	2.1	22	87	8	65	11	9	2	77	1.08
15656431--15656536	3	36.0	3	80	3	108	59	4	3	32	1.36
15656433--15656560	21	6.1	20	70	16	64	57	5	3	34	1.38
15656438--15656590	9	14.9	10	75	16	104	55	4	2	37	1.34
15656438--15656591	12	11.7	14	74	13	82	55	4	2	37	1.34
15658206--15658249	18	2.4	18	84	3	52	59	0	4	36	1.18
15676884--15676917	17	2.1	16	94	5	59	44	0	0	55	0.99
15677557--15677613	13	4.2	13	76	10	51	54	0	0	45	0.99
15677563--15677610	14	3.3	15	77	8	55	52	0	0	47	1.00
15677651--15677689	16	2.4	17	86	4	53	66	0	2	30	1.05
15677774--15677806	17	2.0	17	94	5	59	51	0	0	48	1.00
15677847--15677873	14	1.9	14	100	0	54	22	0	0	77	0.76
15678906--15678962	26	2.2	24	77	14	60	43	3	10	42	1.56
15679574--15679624	23	2.2	22	80	10	57	47	1	5	45	1.38
15686918--15686971	26	2.1	26	82	0	63	44	9	11	35	1.72
15692024--15692055	16	1.9	17	93	6	57	53	3	0	43	1.16
15692824--15692903	41	2.0	40	82	7	99	40	5	2	52	1.37
15693020--15693066	23	2.1	23	84	7	62	61	0	0	38	0.96
15694144--15694190	19	2.6	19	83	6	53	38	0	6	55	1.26
15705645--15705700	20	2.8	20	81	2	69	66	7	8	17	1.42
15713081--15713179	37	2.7	37	96	0	180	26	11	19	43	1.84
15713118--15713290	93	1.9	93	79	7	199	34	8	15	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15713248--15713401	59	2.6	59	96	0	281	41	6	9	42	1.64
15713570--15713628	24	2.4	25	80	8	68	69	1	5	23	1.18
15713660--15713704	18	2.6	17	83	13	56	64	0	13	22	1.28
15713655--15713704	12	4.5	11	76	16	50	66	0	14	20	1.26
15714532--15714608	3	25.7	3	89	0	91	67	23	0	9	1.19
15714535--15714721	9	20.4	9	87	3	167	66	10	0	22	1.22
15714607--15714721	3	38.3	3	94	0	203	66	2	0	30	1.05
15715134--15715380	64	3.9	64	76	4	212	42	10	21	25	1.85
15715642--15715680	21	1.9	20	84	5	51	46	25	2	25	1.66
15717008--15717040	12	2.8	12	90	9	50	3	18	0	78	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130